Wall clock time and date at job start Sat Apr 11 2020 06:16:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86800 * 120.00190 * 2 1 4 4 H 1.48508 * 109.47150 * 274.88930 * 3 2 1 5 5 H 1.48498 * 109.47083 * 34.88701 * 3 2 1 6 6 H 1.48495 * 109.47317 * 154.89072 * 3 2 1 7 7 C 1.38810 * 120.00047 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00267 * 339.73211 * 7 2 1 9 9 N 1.36938 * 120.00270 * 159.73093 * 7 2 1 10 10 C 1.46933 * 120.63200 * 152.78410 * 9 7 2 11 11 C 1.53183 * 108.77418 * 126.41433 * 10 9 7 12 12 C 1.53044 * 109.31594 * 54.63813 * 11 10 9 13 13 H 1.09001 * 109.46054 * 58.63714 * 12 11 10 14 14 N 1.46498 * 109.46502 * 178.61334 * 12 11 10 15 15 C 1.34782 * 119.99580 * 275.03056 * 14 12 11 16 16 O 1.21595 * 120.00368 * 359.97438 * 15 14 12 17 17 C 1.47434 * 119.99462 * 180.02562 * 15 14 12 18 18 C 1.38745 * 120.33428 * 359.97438 * 17 15 14 19 19 C 1.38864 * 120.72926 * 179.75068 * 18 17 15 20 20 C 1.36353 * 121.05570 * 0.25081 * 19 18 17 21 21 C 1.40446 * 120.08245 * 0.02562 * 20 19 18 22 22 C 1.40802 * 121.25367 * 179.97438 * 21 20 19 23 23 C 1.36630 * 118.15551 * 179.97438 * 22 21 20 24 24 C 1.39238 * 119.90288 * 0.04305 * 23 22 21 25 25 N 1.31230 * 121.69940 * 359.97438 * 24 23 22 26 26 C 1.33351 * 121.35126 * 359.97438 * 25 24 23 27 27 C 1.53045 * 109.52470 * 298.62979 * 12 11 10 28 28 H 1.09002 * 109.49114 * 301.41611 * 27 12 11 29 29 O 1.42897 * 109.49660 * 181.32289 * 27 12 11 30 30 C 1.46922 * 120.63007 * 332.80968 * 9 7 2 31 31 H 0.97002 * 120.00004 * 359.97438 * 1 2 3 32 32 H 1.09000 * 109.58070 * 6.62484 * 10 9 7 33 33 H 1.09000 * 109.58516 * 246.20674 * 10 9 7 34 34 H 1.09001 * 109.50532 * 294.68268 * 11 10 9 35 35 H 1.09007 * 109.52377 * 174.60341 * 11 10 9 36 36 H 0.96999 * 120.00167 * 95.02508 * 14 12 11 37 37 H 1.08003 * 119.63666 * 0.02562 * 18 17 15 38 38 H 1.08002 * 119.47420 * 180.23635 * 19 18 17 39 39 H 1.07995 * 119.95893 * 179.97438 * 20 19 18 40 40 H 1.08001 * 120.92204 * 359.97438 * 22 21 20 41 41 H 1.07997 * 120.05103 * 180.02562 * 23 22 21 42 42 H 1.07999 * 119.14621 * 179.97438 * 24 23 22 43 43 H 0.96697 * 114.00181 * 179.97438 * 29 27 12 44 44 H 1.08994 * 109.59020 * 353.37112 * 30 9 7 45 45 H 1.09000 * 109.58756 * 113.65895 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3944 2.1061 -1.3950 5 1 1.5032 2.6206 0.8008 6 1 3.5956 1.4125 0.5941 7 6 2.0102 -1.2021 -0.0005 8 1 1.5204 -2.1086 0.3230 9 7 3.3160 -1.2387 -0.4114 10 6 4.2335 -2.2658 0.1007 11 6 4.8800 -2.9857 -1.0868 12 6 5.5402 -1.9548 -2.0053 13 1 6.2864 -1.3930 -1.4434 14 7 6.1880 -2.6425 -3.1249 15 6 7.4375 -3.1283 -2.9853 16 8 8.0272 -2.9953 -1.9302 17 6 8.0897 -3.8199 -4.1122 18 6 7.4234 -3.9750 -5.3193 19 6 8.0318 -4.6205 -6.3878 20 6 9.2948 -5.1227 -6.2794 21 6 10.0030 -4.9927 -5.0736 22 6 11.3081 -5.5024 -4.9343 23 6 11.9389 -5.3402 -3.7332 24 6 11.2883 -4.6862 -2.6903 25 7 10.0716 -4.2132 -2.8252 26 6 9.4019 -4.3379 -3.9716 27 6 4.4773 -0.9940 -2.5433 28 1 3.7174 -1.5582 -3.0841 29 8 5.0895 -0.0507 -3.4249 30 6 3.8264 -0.2513 -1.3722 31 1 -0.4850 0.8401 0.0004 32 1 3.6781 -2.9833 0.7048 33 1 5.0067 -1.7951 0.7078 34 1 4.1163 -3.5309 -1.6415 35 1 5.6336 -3.6843 -0.7230 36 1 5.7178 -2.7484 -3.9667 37 1 6.4222 -3.5855 -5.4306 38 1 7.4959 -4.7266 -7.3194 39 1 9.7508 -5.6219 -7.1216 40 1 11.7970 -6.0077 -5.7542 41 1 12.9405 -5.7189 -3.5929 42 1 11.7981 -4.5651 -1.7459 43 1 4.4732 0.5905 -3.8044 44 1 3.0026 0.3602 -1.7401 45 1 4.5647 0.3852 -0.8847 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090402740.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:44 Heat of formation + Delta-G solvation = 11.057158 kcal Electronic energy + Delta-G solvation = -29415.044634 eV Core-core repulsion = 25398.611764 eV Total energy + Delta-G solvation = -4016.432870 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.20319 -39.61806 -38.06684 -37.14277 -35.50046 -34.39689 -33.68264 -32.23898 -30.91803 -30.71575 -29.77817 -29.01170 -25.44991 -24.70443 -23.73970 -23.43092 -22.85132 -21.60030 -20.29849 -19.73755 -18.52765 -18.00278 -17.15957 -16.95355 -16.80449 -16.14368 -16.05837 -15.09347 -15.02646 -14.89491 -14.34294 -14.31057 -14.18675 -14.10224 -13.78894 -13.33161 -13.31394 -13.23336 -12.82828 -12.46147 -12.37574 -12.34157 -12.12793 -11.98653 -11.68656 -11.37091 -10.99199 -10.84751 -10.76162 -10.49846 -10.32752 -10.02994 -9.78639 -9.64061 -9.51654 -9.22667 -9.11457 -8.77600 -8.68360 -8.51674 -7.06810 -6.01054 -3.38142 -0.11838 0.51848 1.50041 2.50031 3.23810 3.25153 3.27112 3.45567 3.49524 3.96645 4.02606 4.23553 4.35753 4.40614 4.47084 4.50554 4.57906 4.71075 4.79757 4.92513 4.97489 5.13422 5.22209 5.29799 5.37473 5.47469 5.56044 5.60455 5.63665 5.71607 5.79313 5.84351 5.86035 5.99159 6.06923 6.15316 6.28797 6.32517 6.42023 6.47352 6.51980 6.60368 6.77692 6.85306 7.69336 7.79870 7.83017 7.95893 8.26656 8.48527 8.86047 9.64474 10.00811 11.14538 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.023629 B = 0.002614 C = 0.002517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.693279 B =10707.739041 C =11119.829741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.023 3.977 3 Si 0.881 3.119 4 H -0.290 1.290 5 H -0.302 1.302 6 H -0.268 1.268 7 C -0.261 4.261 8 H 0.089 0.911 9 N -0.602 5.602 10 C 0.148 3.852 11 C -0.141 4.141 12 C 0.165 3.835 13 H 0.090 0.910 14 N -0.716 5.716 15 C 0.551 3.449 16 O -0.500 6.500 17 C -0.101 4.101 18 C -0.064 4.064 19 C -0.124 4.124 20 C -0.075 4.075 21 C -0.112 4.112 22 C -0.060 4.060 23 C -0.175 4.175 24 C 0.130 3.870 25 N -0.435 5.435 26 C 0.161 3.839 27 C 0.080 3.920 28 H 0.062 0.938 29 O -0.570 6.570 30 C 0.102 3.898 31 H 0.263 0.737 32 H 0.070 0.930 33 H 0.029 0.971 34 H 0.065 0.935 35 H 0.069 0.931 36 H 0.394 0.606 37 H 0.136 0.864 38 H 0.135 0.865 39 H 0.133 0.867 40 H 0.139 0.861 41 H 0.138 0.862 42 H 0.160 0.840 43 H 0.376 0.624 44 H 0.077 0.923 45 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.751 -11.408 -15.561 28.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.176 4.176 3 Si 0.711 3.289 4 H -0.218 1.218 5 H -0.230 1.230 6 H -0.193 1.193 7 C -0.389 4.389 8 H 0.107 0.893 9 N -0.327 5.327 10 C 0.022 3.978 11 C -0.181 4.181 12 C 0.061 3.939 13 H 0.108 0.892 14 N -0.367 5.367 15 C 0.336 3.664 16 O -0.374 6.374 17 C -0.105 4.105 18 C -0.085 4.085 19 C -0.142 4.142 20 C -0.094 4.094 21 C -0.114 4.114 22 C -0.086 4.086 23 C -0.195 4.195 24 C -0.042 4.042 25 N -0.141 5.141 26 C 0.038 3.962 27 C 0.019 3.981 28 H 0.080 0.920 29 O -0.375 6.375 30 C -0.025 4.025 31 H 0.073 0.927 32 H 0.089 0.911 33 H 0.047 0.953 34 H 0.084 0.916 35 H 0.088 0.912 36 H 0.228 0.772 37 H 0.153 0.847 38 H 0.153 0.847 39 H 0.151 0.849 40 H 0.157 0.843 41 H 0.155 0.845 42 H 0.177 0.823 43 H 0.223 0.777 44 H 0.095 0.905 45 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 21.033 -11.094 -13.917 27.553 hybrid contribution 0.047 0.833 -1.387 1.619 sum 21.080 -10.261 -15.304 27.998 Atomic orbital electron populations 1.69828 1.05692 1.26621 1.52764 1.25296 0.95265 0.97584 0.99451 0.86985 0.80311 0.84633 0.76935 1.21813 1.22976 1.19286 1.18945 0.84536 0.94899 1.40560 0.89346 1.44338 1.08701 1.32794 1.46897 1.20968 0.92447 0.91282 0.93082 1.22426 0.99687 0.97932 0.98093 1.20926 0.93998 0.92012 0.86982 0.89222 1.45981 1.15563 1.58604 1.16586 1.17877 0.81411 0.79537 0.87555 1.90846 1.63324 1.55807 1.27466 1.20032 0.93617 1.01749 0.95090 1.21495 0.99677 0.95629 0.91676 1.20850 0.95503 0.98720 0.99124 1.21148 0.94529 0.97700 0.96061 1.18841 0.95835 1.01389 0.95319 1.21448 0.92863 0.96361 0.97970 1.21973 1.01802 1.01310 0.94444 1.23214 0.90576 0.91635 0.98817 1.68352 1.07442 1.15791 1.22541 1.18640 0.93304 0.95092 0.89202 1.22795 0.93536 0.90109 0.91676 0.91959 1.86454 1.39761 1.47004 1.64277 1.22018 0.97633 0.92744 0.90073 0.92685 0.91149 0.95282 0.91585 0.91249 0.77155 0.84672 0.84745 0.84901 0.84310 0.84459 0.82272 0.77692 0.90503 0.94471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.26 13.97 55.49 0.78 -26.49 16 2 C 0.02 0.66 5.24 -17.43 -0.09 0.57 16 3 Si 0.88 22.07 24.34 -169.99 -4.14 17.93 16 4 H -0.29 -6.89 6.70 56.52 0.38 -6.51 16 5 H -0.30 -7.73 7.11 56.52 0.40 -7.33 16 6 H -0.27 -6.71 6.45 56.52 0.36 -6.35 16 7 C -0.26 -7.15 10.04 -15.06 -0.15 -7.30 16 8 H 0.09 2.57 8.05 -52.49 -0.42 2.15 16 9 N -0.60 -14.12 2.77 -172.33 -0.48 -14.60 16 10 C 0.15 2.99 6.52 -3.71 -0.02 2.97 16 11 C -0.14 -2.48 5.65 -26.61 -0.15 -2.63 16 12 C 0.16 2.89 2.12 -67.88 -0.14 2.74 16 13 H 0.09 1.80 7.58 -51.93 -0.39 1.40 16 14 N -0.72 -10.76 4.87 -54.83 -0.27 -11.03 16 15 C 0.55 9.11 7.73 -12.51 -0.10 9.01 16 16 O -0.50 -10.10 14.85 5.28 0.08 -10.02 16 17 C -0.10 -1.38 5.91 -104.61 -0.62 -2.00 16 18 C -0.06 -0.63 9.52 -39.16 -0.37 -1.00 16 19 C -0.12 -0.95 9.93 -40.03 -0.40 -1.34 16 20 C -0.08 -0.58 9.75 -39.43 -0.38 -0.96 16 21 C -0.11 -1.14 5.74 -106.82 -0.61 -1.75 16 22 C -0.06 -0.47 9.89 -39.19 -0.39 -0.85 16 23 C -0.18 -1.35 10.03 -39.79 -0.40 -1.75 16 24 C 0.13 1.39 11.15 -17.44 -0.19 1.19 16 25 N -0.43 -6.49 8.44 -10.76 -0.09 -6.58 16 26 C 0.16 2.22 6.61 -84.58 -0.56 1.66 16 27 C 0.08 1.41 3.14 -26.61 -0.08 1.33 16 28 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 29 O -0.57 -9.11 13.16 -35.23 -0.46 -9.57 16 30 C 0.10 2.19 3.82 -3.71 -0.01 2.18 16 31 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 32 H 0.07 1.39 7.93 -51.93 -0.41 0.97 16 33 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 35 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 36 H 0.39 4.83 6.63 -40.82 -0.27 4.56 16 37 H 0.14 1.04 6.37 -52.48 -0.33 0.71 16 38 H 0.13 0.63 8.06 -52.49 -0.42 0.20 16 39 H 0.13 0.59 8.06 -52.49 -0.42 0.17 16 40 H 0.14 0.60 8.06 -52.49 -0.42 0.17 16 41 H 0.14 0.60 8.06 -52.49 -0.42 0.18 16 42 H 0.16 1.28 8.06 -52.49 -0.42 0.86 16 43 H 0.38 4.68 9.08 45.56 0.41 5.10 16 44 H 0.08 1.75 4.49 -51.93 -0.23 1.51 16 45 H 0.04 0.83 6.97 -51.93 -0.36 0.47 16 LS Contribution 363.72 15.07 5.48 5.48 Total: -1.00 -36.28 363.72 -8.80 -45.08 By element: Atomic # 1 Polarization: 12.78 SS G_CDS: -5.01 Total: 7.76 kcal Atomic # 6 Polarization: 6.72 SS G_CDS: -4.68 Total: 2.04 kcal Atomic # 7 Polarization: -58.63 SS G_CDS: -0.06 Total: -58.69 kcal Atomic # 8 Polarization: -19.21 SS G_CDS: -0.39 Total: -19.60 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -4.14 Total: 17.93 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -36.28 -8.80 -45.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090402740.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.135 kcal (2) G-P(sol) polarization free energy of solvation -36.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.078 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds