Wall clock time and date at job start Sat Apr 11 2020 06:16:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86801 * 119.99958 * 2 1 4 4 H 1.48498 * 109.47099 * 239.99971 * 3 2 1 5 5 H 1.48497 * 109.47340 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47053 * 120.00231 * 3 2 1 7 7 C 1.38809 * 120.00042 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00290 * 197.36043 * 7 2 1 9 9 N 1.36936 * 120.00191 * 17.36183 * 7 2 1 10 10 C 1.46925 * 120.63161 * 207.66650 * 9 7 2 11 11 C 1.53188 * 108.76703 * 233.63577 * 10 9 7 12 12 C 1.53042 * 109.31046 * 305.34574 * 11 10 9 13 13 H 1.09003 * 109.46280 * 301.36546 * 12 11 10 14 14 N 1.46505 * 109.46109 * 181.40072 * 12 11 10 15 15 C 1.34770 * 120.00340 * 84.96750 * 14 12 11 16 16 O 1.21608 * 119.99944 * 0.02562 * 15 14 12 17 17 C 1.47437 * 120.00285 * 180.02562 * 15 14 12 18 18 C 1.38740 * 120.32793 * 359.97438 * 17 15 14 19 19 C 1.38869 * 120.72590 * 180.02562 * 18 17 15 20 20 C 1.36351 * 121.05410 * 0.28375 * 19 18 17 21 21 C 1.40436 * 120.08232 * 359.44023 * 20 19 18 22 22 C 1.40807 * 121.25912 * 180.27562 * 21 20 19 23 23 C 1.36623 * 118.15692 * 180.27422 * 22 21 20 24 24 C 1.39240 * 119.90806 * 0.02562 * 23 22 21 25 25 N 1.31229 * 121.69256 * 359.97438 * 24 23 22 26 26 C 1.33347 * 121.35366 * 0.03936 * 25 24 23 27 27 C 1.53041 * 109.53130 * 61.38353 * 12 11 10 28 28 H 1.08995 * 109.49880 * 178.64227 * 27 12 11 29 29 O 1.42903 * 109.49598 * 58.57813 * 27 12 11 30 30 C 1.46931 * 120.63202 * 27.68411 * 9 7 2 31 31 H 0.96999 * 120.00564 * 359.97438 * 1 2 3 32 32 H 1.08998 * 109.58666 * 353.41331 * 10 9 7 33 33 H 1.09003 * 109.58649 * 113.84094 * 10 9 7 34 34 H 1.08998 * 109.48940 * 185.40413 * 11 10 9 35 35 H 1.08994 * 109.50935 * 65.29779 * 11 10 9 36 36 H 0.97000 * 119.99458 * 264.97192 * 14 12 11 37 37 H 1.08000 * 119.63817 * 0.03886 * 18 17 15 38 38 H 1.08005 * 119.47388 * 179.97438 * 19 18 17 39 39 H 1.08008 * 119.95794 * 179.75550 * 20 19 18 40 40 H 1.08002 * 120.92142 * 0.30498 * 22 21 20 41 41 H 1.08008 * 120.04754 * 180.02562 * 23 22 21 42 42 H 1.07996 * 119.14990 * 179.97438 * 24 23 22 43 43 H 0.96698 * 113.99787 * 180.02562 * 29 27 12 44 44 H 1.09003 * 109.58217 * 6.58731 * 30 9 7 45 45 H 1.08997 * 109.70334 * 246.23644 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0533 -1.2236 0.2785 9 7 1.3724 -2.3609 -0.3549 10 6 1.8196 -3.6548 0.1784 11 6 2.0753 -4.6087 -0.9927 12 6 0.8197 -4.6884 -1.8641 13 1 -0.0193 -5.0357 -1.2611 14 7 1.0493 -5.6256 -2.9665 15 6 0.8489 -6.9454 -2.7818 16 8 0.4770 -7.3584 -1.7001 17 6 1.0805 -7.8886 -3.8911 18 6 1.5043 -7.4248 -5.1281 19 6 1.7244 -8.3058 -6.1787 20 6 1.5254 -9.6461 -6.0263 21 6 1.1023 -10.1587 -4.7892 22 6 0.8947 -11.5388 -4.6026 23 6 0.4774 -11.9677 -3.3744 24 6 0.2693 -11.0467 -2.3511 25 7 0.4642 -9.7614 -2.5303 26 6 0.8710 -9.2784 -3.7048 27 6 0.5014 -3.3028 -2.4307 28 1 -0.3788 -3.3648 -3.0705 29 8 1.6140 -2.8327 -3.1944 30 6 0.2279 -2.3339 -1.2761 31 1 -0.4851 0.8400 0.0004 32 1 2.7401 -3.5177 0.7457 33 1 1.0472 -4.0698 0.8259 34 1 2.3150 -5.6002 -0.6085 35 1 2.9089 -4.2377 -1.5889 36 1 1.3457 -5.2960 -3.8293 37 1 1.6650 -6.3671 -5.2755 38 1 2.0538 -7.9227 -7.1333 39 1 1.6983 -10.3149 -6.8565 40 1 1.0612 -12.2389 -5.4079 41 1 0.3091 -13.0198 -3.1974 42 1 -0.0610 -11.3991 -1.3852 43 1 1.4819 -1.9577 -3.5841 44 1 0.0984 -1.3252 -1.6684 45 1 -0.6756 -2.6396 -0.7486 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090402741.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:52 Heat of formation + Delta-G solvation = 6.863311 kcal Electronic energy + Delta-G solvation = -29402.174584 eV Core-core repulsion = 25385.559856 eV Total energy + Delta-G solvation = -4016.614729 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.16191 -39.47312 -37.85331 -37.09077 -34.76167 -34.20943 -33.64337 -32.11235 -30.80105 -30.55671 -29.16611 -28.89830 -25.37851 -24.68138 -23.70675 -23.37649 -22.25722 -21.61675 -20.13458 -19.39032 -18.46278 -17.89112 -17.19907 -17.01779 -16.13213 -15.87487 -15.40106 -15.03156 -14.97434 -14.84229 -14.29397 -14.15857 -14.05846 -13.83651 -13.71469 -13.31685 -13.22860 -13.12081 -12.67550 -12.39229 -12.08664 -11.98064 -11.93154 -11.62896 -11.23257 -11.08713 -10.77938 -10.73235 -10.56160 -10.42056 -10.15231 -10.02190 -9.89510 -9.64144 -9.23693 -9.09284 -9.07979 -8.65973 -8.51298 -8.40549 -6.65691 -5.79259 -3.19467 -0.08090 0.55277 1.53674 2.53772 3.30678 3.35812 3.39710 3.44346 3.46126 4.00655 4.06483 4.29408 4.44020 4.49915 4.53900 4.61048 4.74509 4.82994 4.88817 5.01029 5.18740 5.32731 5.38031 5.47210 5.52112 5.59887 5.63449 5.64779 5.75715 5.90032 6.01165 6.03301 6.08689 6.19857 6.26877 6.35435 6.51028 6.53533 6.63175 6.84535 6.93850 7.04392 7.21433 7.46132 7.78103 7.80377 7.90350 8.26713 8.45254 8.56863 9.20306 9.83656 10.40818 11.29598 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.026383 B = 0.002472 C = 0.002340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.019061 B =11325.246143 C =11962.535578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C -0.002 4.002 3 Si 0.903 3.097 4 H -0.284 1.284 5 H -0.292 1.292 6 H -0.283 1.283 7 C -0.242 4.242 8 H 0.065 0.935 9 N -0.583 5.583 10 C 0.148 3.852 11 C -0.136 4.136 12 C 0.165 3.835 13 H 0.091 0.909 14 N -0.718 5.718 15 C 0.546 3.454 16 O -0.502 6.502 17 C -0.101 4.101 18 C -0.065 4.065 19 C -0.124 4.124 20 C -0.076 4.076 21 C -0.112 4.112 22 C -0.061 4.061 23 C -0.176 4.176 24 C 0.130 3.870 25 N -0.434 5.434 26 C 0.161 3.839 27 C 0.073 3.927 28 H 0.043 0.957 29 O -0.560 6.560 30 C 0.146 3.854 31 H 0.254 0.746 32 H 0.057 0.943 33 H 0.020 0.980 34 H 0.053 0.947 35 H 0.068 0.932 36 H 0.397 0.603 37 H 0.137 0.863 38 H 0.134 0.866 39 H 0.133 0.867 40 H 0.139 0.861 41 H 0.137 0.863 42 H 0.160 0.840 43 H 0.374 0.626 44 H 0.096 0.904 45 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.154 -21.287 -15.261 26.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.199 4.199 3 Si 0.733 3.267 4 H -0.211 1.211 5 H -0.218 1.218 6 H -0.209 1.209 7 C -0.372 4.372 8 H 0.083 0.917 9 N -0.305 5.305 10 C 0.021 3.979 11 C -0.176 4.176 12 C 0.062 3.938 13 H 0.109 0.891 14 N -0.371 5.371 15 C 0.332 3.668 16 O -0.376 6.376 17 C -0.105 4.105 18 C -0.086 4.086 19 C -0.142 4.142 20 C -0.095 4.095 21 C -0.114 4.114 22 C -0.087 4.087 23 C -0.195 4.195 24 C -0.043 4.043 25 N -0.141 5.141 26 C 0.037 3.963 27 C 0.012 3.988 28 H 0.061 0.939 29 O -0.365 6.365 30 C 0.018 3.982 31 H 0.064 0.936 32 H 0.075 0.925 33 H 0.038 0.962 34 H 0.072 0.928 35 H 0.087 0.913 36 H 0.232 0.768 37 H 0.154 0.846 38 H 0.152 0.848 39 H 0.151 0.849 40 H 0.157 0.843 41 H 0.155 0.845 42 H 0.177 0.823 43 H 0.221 0.779 44 H 0.114 0.886 45 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 0.897 -21.299 -13.586 25.279 hybrid contribution 0.436 0.916 -1.357 1.695 sum 1.333 -20.383 -14.943 25.309 Atomic orbital electron populations 1.70010 1.05197 1.25575 1.54509 1.25008 0.95278 0.98346 1.01302 0.86356 0.78861 0.83322 0.78170 1.21081 1.21759 1.20937 1.19146 0.92696 0.84784 1.40536 0.91725 1.43873 1.35406 1.01595 1.49623 1.20896 0.97846 0.86372 0.92742 1.22298 0.97568 0.99335 0.98419 1.20985 0.99268 0.86290 0.87287 0.89135 1.46155 1.68981 1.05983 1.15933 1.17939 0.78986 0.82161 0.87745 1.90851 1.44139 1.77339 1.25276 1.20073 1.03354 0.92230 0.94858 1.21522 0.94861 1.00593 0.91599 1.20854 1.00693 0.93271 0.99339 1.21142 0.96723 0.95930 0.95744 1.18841 1.02899 0.94445 0.95212 1.21443 0.95546 0.93933 0.97760 1.21971 1.01608 1.01613 0.94353 1.23215 0.93500 0.88387 0.99184 1.68355 1.09508 1.14748 1.21450 1.18644 0.95968 0.92517 0.89122 1.22846 0.87597 0.94060 0.94311 0.93917 1.86344 1.41986 1.38103 1.70108 1.21429 0.89675 0.98456 0.88601 0.93615 0.92496 0.96200 0.92837 0.91287 0.76760 0.84563 0.84768 0.84934 0.84341 0.84484 0.82277 0.77887 0.88641 0.95451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.86 11.19 55.49 0.62 -25.24 16 2 C 0.00 -0.04 4.91 -17.43 -0.09 -0.13 16 3 Si 0.90 21.49 29.59 -169.99 -5.03 16.46 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.24 -6.60 9.58 -15.06 -0.14 -6.74 16 8 H 0.07 1.76 7.89 -52.49 -0.41 1.34 16 9 N -0.58 -14.56 2.94 -172.32 -0.51 -15.07 16 10 C 0.15 3.30 6.52 -3.71 -0.02 3.28 16 11 C -0.14 -2.69 5.51 -26.61 -0.15 -2.84 16 12 C 0.17 3.06 2.20 -67.88 -0.15 2.91 16 13 H 0.09 1.84 7.58 -51.93 -0.39 1.44 16 14 N -0.72 -11.39 5.00 -54.83 -0.27 -11.66 16 15 C 0.55 9.33 7.73 -12.52 -0.10 9.23 16 16 O -0.50 -10.40 14.85 5.27 0.08 -10.32 16 17 C -0.10 -1.43 5.90 -104.61 -0.62 -2.05 16 18 C -0.07 -0.67 9.52 -39.16 -0.37 -1.04 16 19 C -0.12 -0.99 9.93 -40.03 -0.40 -1.39 16 20 C -0.08 -0.61 9.75 -39.43 -0.38 -0.99 16 21 C -0.11 -1.17 5.74 -106.83 -0.61 -1.79 16 22 C -0.06 -0.48 9.89 -39.19 -0.39 -0.87 16 23 C -0.18 -1.40 10.03 -39.79 -0.40 -1.80 16 24 C 0.13 1.42 11.15 -17.44 -0.19 1.22 16 25 N -0.43 -6.62 8.44 -10.76 -0.09 -6.71 16 26 C 0.16 2.27 6.61 -84.59 -0.56 1.71 16 27 C 0.07 1.35 3.38 -26.61 -0.09 1.26 16 28 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 29 O -0.56 -9.90 12.08 -35.23 -0.43 -10.32 16 30 C 0.15 3.35 4.95 -3.71 -0.02 3.33 16 31 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 32 H 0.06 1.25 7.93 -51.93 -0.41 0.83 16 33 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.07 1.42 7.61 -51.93 -0.40 1.02 16 36 H 0.40 5.37 6.28 -40.82 -0.26 5.11 16 37 H 0.14 1.15 6.37 -52.49 -0.33 0.82 16 38 H 0.13 0.67 8.06 -52.48 -0.42 0.25 16 39 H 0.13 0.62 8.06 -52.48 -0.42 0.20 16 40 H 0.14 0.63 8.06 -52.49 -0.42 0.21 16 41 H 0.14 0.63 8.06 -52.48 -0.42 0.21 16 42 H 0.16 1.33 8.06 -52.49 -0.42 0.90 16 43 H 0.37 5.73 9.08 45.56 0.41 6.14 16 44 H 0.10 2.39 6.03 -51.93 -0.31 2.08 16 45 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 368.65 15.07 5.56 5.56 Total: -1.00 -34.93 368.65 -9.80 -44.73 By element: Atomic # 1 Polarization: 14.31 SS G_CDS: -5.04 Total: 9.26 kcal Atomic # 6 Polarization: 8.00 SS G_CDS: -4.68 Total: 3.32 kcal Atomic # 7 Polarization: -58.43 SS G_CDS: -0.25 Total: -58.68 kcal Atomic # 8 Polarization: -20.29 SS G_CDS: -0.35 Total: -20.64 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.03 Total: 16.46 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -34.93 -9.80 -44.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090402741.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.589 kcal (2) G-P(sol) polarization free energy of solvation -34.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.726 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds