Wall clock time and date at job start Sat Apr 11 2020 06:16:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86799 * 120.00254 * 2 1 4 4 H 1.48504 * 109.46628 * 266.78527 * 3 2 1 5 5 H 1.48499 * 109.47139 * 26.78205 * 3 2 1 6 6 H 1.48497 * 109.47251 * 146.78455 * 3 2 1 7 7 C 1.38814 * 119.99904 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99885 * 339.59589 * 7 2 1 9 9 N 1.36933 * 120.00155 * 159.59589 * 7 2 1 10 10 C 1.46921 * 120.63278 * 152.70490 * 9 7 2 11 11 C 1.53195 * 108.77654 * 126.11694 * 10 9 7 12 12 C 1.53040 * 109.31010 * 54.63843 * 11 10 9 13 13 H 1.09000 * 109.46361 * 58.65515 * 12 11 10 14 14 N 1.46502 * 109.45719 * 178.63069 * 12 11 10 15 15 C 1.34771 * 119.99923 * 274.99638 * 14 12 11 16 16 O 1.21549 * 119.99998 * 0.02562 * 15 14 12 17 17 C 1.47899 * 120.00160 * 180.02562 * 15 14 12 18 18 C 1.38891 * 121.11310 * 2.85702 * 17 15 14 19 19 C 1.39272 * 119.58195 * 179.68583 * 18 17 15 20 20 N 1.30992 * 121.88136 * 0.66321 * 19 18 17 21 21 C 1.33534 * 121.83021 * 359.63937 * 20 19 18 22 22 C 1.40715 * 120.97305 * 180.02562 * 21 20 19 23 23 C 1.36056 * 119.74309 * 179.97438 * 22 21 20 24 24 C 1.39356 * 121.05667 * 0.04657 * 23 22 21 25 25 C 1.36248 * 120.83474 * 359.97438 * 24 23 22 26 26 C 1.40106 * 119.64731 * 359.97438 * 25 24 23 27 27 C 1.53047 * 109.53554 * 298.63050 * 12 11 10 28 28 H 1.08996 * 109.49389 * 181.34768 * 27 12 11 29 29 O 1.42895 * 109.50054 * 301.41888 * 27 12 11 30 30 C 1.46932 * 120.62859 * 332.42830 * 9 7 2 31 31 H 0.97002 * 120.00171 * 0.02562 * 1 2 3 32 32 H 1.09001 * 109.59035 * 245.90979 * 10 9 7 33 33 H 1.09004 * 109.58457 * 6.33260 * 10 9 7 34 34 H 1.09005 * 109.49880 * 174.59010 * 11 10 9 35 35 H 1.09000 * 109.49944 * 294.65243 * 11 10 9 36 36 H 0.96995 * 119.99972 * 94.99607 * 14 12 11 37 37 H 1.07997 * 120.20925 * 0.02562 * 18 17 15 38 38 H 1.07999 * 119.06309 * 180.27833 * 19 18 17 39 39 H 1.07998 * 120.12646 * 0.02562 * 22 21 20 40 40 H 1.08000 * 119.47499 * 180.02562 * 23 22 21 41 41 H 1.07997 * 119.58131 * 179.97438 * 24 23 22 42 42 H 1.08004 * 120.17492 * 180.02562 * 25 24 23 43 43 H 0.96698 * 113.99841 * 180.02562 * 29 27 12 44 44 H 1.09001 * 109.58497 * 353.66833 * 30 9 7 45 45 H 1.08997 * 109.58770 * 114.09572 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.5657 2.0070 -1.3980 5 1 1.4154 2.6713 0.6309 6 1 3.5121 1.4607 0.7669 7 6 2.0102 -1.2022 0.0005 8 1 1.5210 -2.1080 0.3270 9 7 3.3151 -1.2396 -0.4129 10 6 4.2340 -2.2645 0.1007 11 6 4.8728 -2.9933 -1.0857 12 6 5.5292 -1.9694 -2.0147 13 1 6.2795 -1.4051 -1.4609 14 7 6.1693 -2.6655 -3.1336 15 6 7.4190 -3.1517 -2.9984 16 8 8.0147 -3.0131 -1.9480 17 6 8.0655 -3.8539 -4.1281 18 6 7.4295 -3.9740 -5.3570 19 6 8.0705 -4.6363 -6.4011 20 7 9.2600 -5.1659 -6.2578 21 6 9.9283 -5.0946 -5.1039 22 6 11.2055 -5.6697 -4.9700 23 6 11.8643 -5.5818 -3.7828 24 6 11.2943 -4.9301 -2.6909 25 6 10.0594 -4.3619 -2.7833 26 6 9.3528 -4.4325 -3.9911 27 6 4.4647 -1.0105 -2.5531 28 1 4.9290 -0.2965 -3.2332 29 8 3.4634 -1.7530 -3.2516 30 6 3.8214 -0.2593 -1.3832 31 1 -0.4850 0.8400 -0.0004 32 1 5.0115 -1.7909 0.7003 33 1 3.6812 -2.9773 0.7127 34 1 5.6276 -3.6901 -0.7211 35 1 4.1053 -3.5414 -1.6321 36 1 5.6938 -2.7764 -3.9716 37 1 6.4464 -3.5518 -5.5036 38 1 7.5702 -4.7208 -7.3545 39 1 11.6614 -6.1782 -5.8066 40 1 12.8446 -6.0243 -3.6850 41 1 11.8383 -4.8748 -1.7595 42 1 9.6279 -3.8591 -1.9304 43 1 2.7554 -1.2076 -3.6209 44 1 2.9962 0.3510 -1.7504 45 1 4.5652 0.3778 -0.9048 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090407513.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:55 Heat of formation + Delta-G solvation = -13.066767 kcal Electronic energy + Delta-G solvation = -29510.566720 eV Core-core repulsion = 25493.087758 eV Total energy + Delta-G solvation = -4017.478962 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.20504 -40.91991 -39.56636 -38.09951 -36.63756 -35.89590 -34.63915 -33.97402 -32.01794 -31.54022 -31.14777 -30.57437 -27.27326 -25.88137 -24.64387 -24.56773 -23.89700 -23.14029 -21.80155 -21.17012 -19.43694 -19.05777 -18.60686 -18.45361 -17.70154 -17.26884 -16.85719 -16.57713 -16.31073 -16.02837 -15.88723 -15.67612 -15.59396 -15.30184 -14.91119 -14.85488 -14.64108 -14.36501 -14.17942 -14.11810 -13.96613 -13.42348 -13.03690 -12.80093 -12.70153 -12.64579 -12.42961 -12.33042 -12.19560 -11.99251 -11.90360 -11.57111 -11.44979 -11.35371 -10.94815 -10.62955 -10.35168 -10.19149 -9.82295 -9.30347 -8.93311 -8.14321 -5.46507 -0.97590 -0.23834 0.65347 1.26251 1.44253 1.51766 1.70263 1.86463 2.07644 2.40970 3.01032 3.07847 3.25823 3.28950 3.30894 3.45943 3.61933 3.67006 3.72296 3.85271 3.91242 4.10946 4.16783 4.20927 4.23520 4.39656 4.50799 4.51508 4.53908 4.62727 4.70872 4.74402 4.74667 4.79295 4.94032 5.01714 5.04761 5.10952 5.33282 5.33875 5.41379 5.48881 5.56561 5.86116 5.87646 6.13608 6.38560 6.78826 6.82162 6.93521 7.03592 7.61009 8.00764 9.05651 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.024580 B = 0.002609 C = 0.002481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.848452 B =10729.709610 C =11284.166021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C -0.033 4.033 3 Si 0.945 3.055 4 H -0.258 1.258 5 H -0.315 1.315 6 H -0.270 1.270 7 C -0.242 4.242 8 H 0.047 0.953 9 N -0.608 5.608 10 C 0.147 3.853 11 C -0.125 4.125 12 C 0.166 3.834 13 H 0.091 0.909 14 N -0.694 5.694 15 C 0.558 3.442 16 O -0.557 6.557 17 C -0.092 4.092 18 C -0.122 4.122 19 C 0.125 3.875 20 N -0.475 5.475 21 C 0.101 3.899 22 C -0.107 4.107 23 C -0.093 4.093 24 C -0.114 4.114 25 C -0.129 4.129 26 C -0.086 4.086 27 C 0.094 3.906 28 H 0.086 0.914 29 O -0.561 6.561 30 C 0.086 3.914 31 H 0.262 0.738 32 H 0.035 0.965 33 H 0.056 0.944 34 H 0.063 0.937 35 H 0.062 0.938 36 H 0.416 0.584 37 H 0.173 0.827 38 H 0.205 0.795 39 H 0.153 0.847 40 H 0.164 0.836 41 H 0.150 0.850 42 H 0.151 0.849 43 H 0.390 0.610 44 H 0.071 0.929 45 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.957 -7.988 -14.661 27.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.227 4.227 3 Si 0.774 3.226 4 H -0.184 1.184 5 H -0.244 1.244 6 H -0.196 1.196 7 C -0.371 4.371 8 H 0.064 0.936 9 N -0.332 5.332 10 C 0.022 3.978 11 C -0.165 4.165 12 C 0.062 3.938 13 H 0.109 0.891 14 N -0.345 5.345 15 C 0.346 3.654 16 O -0.437 6.437 17 C -0.103 4.103 18 C -0.142 4.142 19 C -0.047 4.047 20 N -0.183 5.183 21 C -0.020 4.020 22 C -0.125 4.125 23 C -0.113 4.113 24 C -0.132 4.132 25 C -0.148 4.148 26 C -0.089 4.089 27 C 0.033 3.967 28 H 0.103 0.897 29 O -0.368 6.368 30 C -0.040 4.040 31 H 0.071 0.929 32 H 0.053 0.947 33 H 0.074 0.926 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.254 0.746 37 H 0.190 0.810 38 H 0.221 0.779 39 H 0.170 0.830 40 H 0.182 0.818 41 H 0.167 0.833 42 H 0.168 0.832 43 H 0.239 0.761 44 H 0.089 0.911 45 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 23.086 -8.757 -14.366 28.566 hybrid contribution -1.374 1.718 0.724 2.317 sum 21.711 -7.039 -13.642 26.590 Atomic orbital electron populations 1.69968 1.07416 1.27200 1.55653 1.25854 0.95759 1.00685 1.00446 0.86016 0.78055 0.80062 0.78490 1.18444 1.24405 1.19556 1.18771 0.86435 0.93375 1.38544 0.93561 1.44271 1.07654 1.34124 1.47157 1.21011 0.91958 0.90698 0.94147 1.22111 0.99302 0.97975 0.97079 1.20842 0.92792 0.92968 0.87218 0.89117 1.45843 1.14472 1.56702 1.17497 1.18334 0.81538 0.78450 0.87079 1.90587 1.64017 1.59042 1.30076 1.20353 0.95002 0.99923 0.95015 1.22830 1.01831 0.97736 0.91815 1.23577 0.89936 0.91054 1.00100 1.67859 1.09344 1.17428 1.23718 1.19201 0.96243 0.97918 0.88675 1.21098 0.92117 0.99713 0.99586 1.21357 1.01143 0.97078 0.91689 1.21441 0.94978 0.96431 1.00302 1.22053 0.95678 0.99151 0.97878 1.18887 0.94369 0.99422 0.96185 1.22394 0.88432 0.92726 0.93137 0.89685 1.86356 1.38274 1.38641 1.73526 1.22260 0.98045 0.92534 0.91111 0.92950 0.94742 0.92567 0.91836 0.91939 0.74615 0.80982 0.77881 0.82977 0.81804 0.83264 0.83166 0.76099 0.91096 0.94096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -58.28 13.97 21.65 0.30 -57.98 16 2 C -0.03 -1.84 5.23 84.86 0.44 -1.40 16 3 Si 0.94 44.06 24.37 68.60 1.67 45.74 16 4 H -0.26 -10.68 6.35 99.48 0.63 -10.05 16 5 H -0.31 -15.26 7.11 99.48 0.71 -14.56 16 6 H -0.27 -12.40 6.98 99.48 0.69 -11.71 16 7 C -0.24 -13.30 10.03 84.03 0.84 -12.45 16 8 H 0.05 2.85 8.06 -2.91 -0.02 2.83 16 9 N -0.61 -27.32 2.71 -699.08 -1.89 -29.22 16 10 C 0.15 5.76 6.52 86.36 0.56 6.32 16 11 C -0.12 -4.15 5.51 30.67 0.17 -3.98 16 12 C 0.17 4.83 2.20 45.02 0.10 4.93 16 13 H 0.09 2.79 7.58 -2.39 -0.02 2.77 16 14 N -0.69 -16.52 5.01 -445.22 -2.23 -18.75 16 15 C 0.56 14.81 7.73 86.80 0.67 15.48 16 16 O -0.56 -18.02 13.17 -3.87 -0.05 -18.07 16 17 C -0.09 -2.12 5.94 -19.68 -0.12 -2.24 16 18 C -0.12 -1.95 9.60 22.67 0.22 -1.73 16 19 C 0.13 1.91 11.14 85.07 0.95 2.85 16 20 N -0.47 -9.89 10.30 -188.73 -1.94 -11.84 16 21 C 0.10 2.29 6.61 40.35 0.27 2.56 16 22 C -0.11 -1.91 9.98 22.37 0.22 -1.69 16 23 C -0.09 -1.38 9.94 22.03 0.22 -1.16 16 24 C -0.11 -2.06 9.96 22.08 0.22 -1.84 16 25 C -0.13 -3.18 9.25 22.26 0.21 -2.97 16 26 C -0.09 -2.14 5.76 -21.09 -0.12 -2.26 16 27 C 0.09 2.73 3.38 30.67 0.10 2.84 16 28 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 29 O -0.56 -16.38 12.09 -148.98 -1.80 -18.18 16 30 C 0.09 3.28 3.85 86.36 0.33 3.61 16 31 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 32 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.06 2.28 7.93 -2.38 -0.02 2.26 16 34 H 0.06 2.05 8.14 -2.38 -0.02 2.03 16 35 H 0.06 2.25 7.61 -2.39 -0.02 2.23 16 36 H 0.42 7.84 6.40 -92.71 -0.59 7.25 16 37 H 0.17 1.63 6.52 -2.91 -0.02 1.61 16 38 H 0.20 1.38 8.06 -2.91 -0.02 1.35 16 39 H 0.15 2.09 8.06 -2.91 -0.02 2.07 16 40 H 0.16 1.22 8.06 -2.91 -0.02 1.20 16 41 H 0.15 1.95 8.06 -2.91 -0.02 1.93 16 42 H 0.15 4.25 4.96 -2.91 -0.01 4.24 16 43 H 0.39 9.80 9.08 -74.06 -0.67 9.13 16 44 H 0.07 2.89 4.33 -2.39 -0.01 2.88 16 45 H 0.04 1.51 7.30 -2.39 -0.02 1.49 16 Total: -1.00 -73.92 359.41 -0.95 -74.87 By element: Atomic # 1 Polarization: 26.85 SS G_CDS: -0.30 Total: 26.56 kcal Atomic # 6 Polarization: 1.58 SS G_CDS: 5.29 Total: 6.87 kcal Atomic # 7 Polarization: -112.02 SS G_CDS: -5.76 Total: -117.79 kcal Atomic # 8 Polarization: -34.40 SS G_CDS: -1.85 Total: -36.25 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 1.67 Total: 45.74 kcal Total: -73.92 -0.95 -74.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090407513.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.807 kcal (2) G-P(sol) polarization free energy of solvation -73.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds