Wall clock time and date at job start Sat Apr 11 2020 06:17:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86797 * 119.99807 * 2 1 4 4 H 1.48503 * 109.47357 * 239.99706 * 3 2 1 5 5 H 1.48497 * 109.47359 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47206 * 120.00189 * 3 2 1 7 7 C 1.38814 * 120.00301 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99943 * 170.06145 * 7 2 1 9 9 N 1.36933 * 119.99682 * 350.33624 * 7 2 1 10 10 C 1.46926 * 120.63406 * 328.43822 * 9 7 2 11 11 C 1.53198 * 108.77478 * 233.58490 * 10 9 7 12 12 C 1.53032 * 109.31275 * 305.36212 * 11 10 9 13 13 H 1.09001 * 109.46235 * 301.34701 * 12 11 10 14 14 N 1.46498 * 109.46246 * 181.37299 * 12 11 10 15 15 C 1.34772 * 120.00248 * 84.99567 * 14 12 11 16 16 O 1.21544 * 120.00077 * 0.02562 * 15 14 12 17 17 C 1.47907 * 120.00328 * 180.02562 * 15 14 12 18 18 C 1.38894 * 121.10976 * 5.76819 * 17 15 14 19 19 C 1.39272 * 119.57701 * 180.02562 * 18 17 15 20 20 N 1.30992 * 121.88197 * 0.02562 * 19 18 17 21 21 C 1.33531 * 121.83047 * 359.97438 * 20 19 18 22 22 C 1.40721 * 120.96790 * 179.97438 * 21 20 19 23 23 C 1.36070 * 119.73563 * 179.13809 * 22 21 20 24 24 C 1.39354 * 121.05222 * 0.85296 * 23 22 21 25 25 C 1.36246 * 120.83934 * 359.44675 * 24 23 22 26 26 C 1.40101 * 119.64415 * 359.97438 * 25 24 23 27 27 C 1.53048 * 109.53946 * 61.36447 * 12 11 10 28 28 H 1.08999 * 109.49371 * 58.58398 * 27 12 11 29 29 O 1.42893 * 109.49770 * 178.68265 * 27 12 11 30 30 C 1.46926 * 120.62775 * 148.15515 * 9 7 2 31 31 H 0.97001 * 120.00478 * 0.02562 * 1 2 3 32 32 H 1.09003 * 109.58308 * 353.36891 * 10 9 7 33 33 H 1.09002 * 109.58988 * 113.79521 * 10 9 7 34 34 H 1.09004 * 109.49648 * 65.31282 * 11 10 9 35 35 H 1.09000 * 109.49328 * 185.37733 * 11 10 9 36 36 H 0.97006 * 119.99937 * 265.00314 * 14 12 11 37 37 H 1.07991 * 120.20893 * 359.97438 * 18 17 15 38 38 H 1.07996 * 119.05684 * 180.02562 * 19 18 17 39 39 H 1.07997 * 120.13100 * 359.97438 * 22 21 20 40 40 H 1.08004 * 119.46987 * 180.25847 * 23 22 21 41 41 H 1.07999 * 119.57998 * 179.43582 * 24 23 22 42 42 H 1.08001 * 120.17571 * 179.97438 * 25 24 23 43 43 H 0.96700 * 114.00093 * 180.02562 * 29 27 12 44 44 H 1.09003 * 109.58831 * 246.20219 * 30 9 7 45 45 H 1.08994 * 109.58711 * 6.63188 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7464 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0781 -1.2091 -0.1609 9 7 1.3402 -2.3795 0.2001 10 6 0.1437 -2.4249 1.0517 11 6 0.3377 -3.5085 2.1171 12 6 0.6733 -4.8360 1.4336 13 1 -0.1325 -5.1072 0.7516 14 7 0.8273 -5.8819 2.4477 15 6 -0.2555 -6.5402 2.9066 16 8 -1.3597 -6.2664 2.4788 17 6 -0.1002 -7.5959 3.9309 18 6 1.1314 -7.8466 4.5220 19 6 1.2415 -8.8488 5.4828 20 7 0.2121 -9.5704 5.8510 21 6 -1.0016 -9.3853 5.3259 22 6 -2.0949 -10.1715 5.7345 23 6 -3.3245 -9.9496 5.1956 24 6 -3.5186 -8.9650 4.2287 25 6 -2.4823 -8.1889 3.8044 26 6 -1.2049 -8.3817 4.3465 27 6 1.9790 -4.6916 0.6483 28 1 2.7802 -4.3961 1.3257 29 8 2.3076 -5.9399 0.0356 30 6 1.8004 -3.6202 -0.4382 31 1 -0.4851 0.8400 -0.0004 32 1 0.0025 -1.4582 1.5352 33 1 -0.7290 -2.6625 0.4434 34 1 1.1544 -3.2243 2.7807 35 1 -0.5797 -3.6183 2.6955 36 1 1.7086 -6.1007 2.7890 37 1 1.9983 -7.2687 4.2378 38 1 2.2031 -9.0364 5.9373 39 1 -1.9613 -10.9387 6.4827 40 1 -4.1614 -10.5528 5.5153 41 1 -4.5029 -8.8153 3.8104 42 1 -2.6447 -7.4291 3.0543 43 1 3.1258 -5.9220 -0.4795 44 1 1.0600 -3.9534 -1.1656 45 1 2.7525 -3.4426 -0.9381 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090407514.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:01 Heat of formation + Delta-G solvation = 1.858748 kcal Electronic energy + Delta-G solvation = -29294.539798 eV Core-core repulsion = 25277.708055 eV Total energy + Delta-G solvation = -4016.831743 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.26510 -39.62954 -37.98533 -37.28438 -35.46608 -34.53956 -33.62984 -32.02919 -30.76204 -30.46936 -29.72506 -28.55597 -25.78931 -24.70238 -23.76205 -23.01701 -22.41713 -21.71390 -20.64771 -19.61419 -18.32757 -17.79005 -17.53240 -17.08040 -16.57483 -15.97631 -15.66987 -15.13951 -15.00501 -14.87688 -14.69421 -14.20998 -14.09707 -13.98749 -13.88050 -13.45282 -13.28444 -13.16640 -12.81564 -12.35588 -12.15831 -11.98834 -11.80870 -11.62268 -11.53944 -11.12906 -10.93844 -10.75722 -10.66138 -10.43397 -10.34308 -10.31265 -10.02121 -9.83045 -9.64838 -9.30996 -9.01845 -8.92183 -8.54905 -8.41551 -6.76899 -5.88926 -3.39792 -0.08671 0.57601 1.56624 2.62133 3.04053 3.09402 3.31562 3.37215 3.37943 3.95078 4.01251 4.28144 4.37004 4.40860 4.50163 4.53579 4.64931 4.88687 5.00994 5.12970 5.20762 5.30175 5.32094 5.39521 5.43493 5.46469 5.56534 5.67921 5.81438 5.89226 5.90283 6.03153 6.12064 6.18477 6.32275 6.37813 6.42766 6.46730 6.60401 6.66818 6.71488 6.77213 7.25072 7.50794 7.59697 7.61418 7.67616 7.84607 8.20112 8.35915 9.09572 9.69452 10.26730 11.19008 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.020343 B = 0.002509 C = 0.002405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1376.090858 B =11157.007276 C =11640.076881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.008 3.992 3 Si 0.908 3.092 4 H -0.282 1.282 5 H -0.289 1.289 6 H -0.283 1.283 7 C -0.262 4.262 8 H 0.065 0.935 9 N -0.588 5.588 10 C 0.172 3.828 11 C -0.148 4.148 12 C 0.162 3.838 13 H 0.091 0.909 14 N -0.702 5.702 15 C 0.557 3.443 16 O -0.526 6.526 17 C -0.062 4.062 18 C -0.142 4.142 19 C 0.126 3.874 20 N -0.462 5.462 21 C 0.123 3.877 22 C -0.102 4.102 23 C -0.097 4.097 24 C -0.121 4.121 25 C -0.097 4.097 26 C -0.067 4.067 27 C 0.079 3.921 28 H 0.057 0.943 29 O -0.572 6.572 30 C 0.121 3.879 31 H 0.257 0.743 32 H 0.096 0.904 33 H 0.024 0.976 34 H 0.058 0.942 35 H 0.063 0.937 36 H 0.397 0.603 37 H 0.142 0.858 38 H 0.165 0.835 39 H 0.135 0.865 40 H 0.129 0.871 41 H 0.129 0.871 42 H 0.171 0.829 43 H 0.375 0.625 44 H 0.030 0.970 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.735 -18.315 9.839 20.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.192 4.192 3 Si 0.737 3.263 4 H -0.208 1.208 5 H -0.215 1.215 6 H -0.209 1.209 7 C -0.391 4.391 8 H 0.083 0.917 9 N -0.312 5.312 10 C 0.046 3.954 11 C -0.188 4.188 12 C 0.059 3.941 13 H 0.109 0.891 14 N -0.351 5.351 15 C 0.343 3.657 16 O -0.404 6.404 17 C -0.073 4.073 18 C -0.163 4.163 19 C -0.046 4.046 20 N -0.170 5.170 21 C 0.002 3.998 22 C -0.121 4.121 23 C -0.117 4.117 24 C -0.139 4.139 25 C -0.115 4.115 26 C -0.070 4.070 27 C 0.018 3.982 28 H 0.075 0.925 29 O -0.376 6.376 30 C -0.007 4.007 31 H 0.067 0.933 32 H 0.114 0.886 33 H 0.042 0.958 34 H 0.077 0.923 35 H 0.081 0.919 36 H 0.232 0.768 37 H 0.160 0.840 38 H 0.182 0.818 39 H 0.153 0.847 40 H 0.147 0.853 41 H 0.147 0.853 42 H 0.188 0.812 43 H 0.221 0.779 44 H 0.048 0.952 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.724 -18.796 10.416 21.502 hybrid contribution 1.415 1.581 -0.692 2.232 sum 0.691 -17.215 9.724 19.784 Atomic orbital electron populations 1.69946 1.05307 1.25919 1.53315 1.25214 0.95452 0.98557 0.99933 0.86304 0.78828 0.83020 0.78150 1.20771 1.21489 1.20887 1.19102 0.90662 0.83602 1.45746 0.91696 1.44012 1.31068 1.03618 1.52505 1.20860 0.88064 0.96884 0.89587 1.22645 1.00969 0.94750 1.00445 1.21120 0.97679 0.86943 0.88398 0.89086 1.46041 1.09052 1.37955 1.42097 1.18007 0.85011 0.81107 0.81557 1.90600 1.24676 1.66196 1.58937 1.20484 0.93801 0.96260 0.96800 1.22438 0.97350 0.99050 0.97430 1.22886 0.97652 0.90685 0.93388 1.67790 0.98921 1.25401 1.24935 1.18887 0.92107 0.94721 0.94116 1.20761 0.90969 0.99542 1.00789 1.21005 0.97050 0.97497 0.96113 1.21123 0.99744 0.95703 0.97337 1.22141 0.90714 0.99330 0.99331 1.18701 0.94467 0.96282 0.97517 1.22883 0.95440 0.84383 0.95482 0.92506 1.86476 1.46829 1.33695 1.70623 1.21624 0.98926 0.87378 0.92748 0.93274 0.88580 0.95773 0.92287 0.91860 0.76847 0.83999 0.81754 0.84698 0.85291 0.85307 0.81197 0.77868 0.95216 0.92068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.38 11.01 55.49 0.61 -24.77 16 2 C 0.01 0.21 5.07 -17.43 -0.09 0.12 16 3 Si 0.91 20.90 29.56 -169.99 -5.03 15.87 16 4 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.26 -6.81 9.58 -15.06 -0.14 -6.96 16 8 H 0.07 1.64 7.85 -52.49 -0.41 1.23 16 9 N -0.59 -13.97 2.98 -172.05 -0.51 -14.48 16 10 C 0.17 4.00 5.25 -3.71 -0.02 3.98 16 11 C -0.15 -2.79 5.65 -26.61 -0.15 -2.94 16 12 C 0.16 2.77 2.12 -67.89 -0.14 2.63 16 13 H 0.09 1.80 7.57 -51.93 -0.39 1.40 16 14 N -0.70 -10.00 4.87 -54.69 -0.27 -10.27 16 15 C 0.56 8.56 7.72 -12.30 -0.09 8.46 16 16 O -0.53 -9.58 13.18 5.33 0.07 -9.51 16 17 C -0.06 -0.82 5.94 -104.34 -0.62 -1.44 16 18 C -0.14 -1.43 9.60 -38.95 -0.37 -1.80 16 19 C 0.13 1.21 11.14 -17.53 -0.20 1.02 16 20 N -0.46 -5.57 10.30 -11.01 -0.11 -5.68 16 21 C 0.12 1.58 6.61 -84.87 -0.56 1.01 16 22 C -0.10 -1.08 9.99 -39.42 -0.39 -1.47 16 23 C -0.10 -0.90 9.94 -39.95 -0.40 -1.30 16 24 C -0.12 -1.29 9.96 -39.88 -0.40 -1.69 16 25 C -0.10 -1.30 9.25 -39.60 -0.37 -1.67 16 26 C -0.07 -0.92 5.76 -106.52 -0.61 -1.53 16 27 C 0.08 1.27 3.16 -26.38 -0.08 1.19 16 28 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 29 O -0.57 -8.07 13.16 -35.23 -0.46 -8.53 16 30 C 0.12 2.37 6.17 -3.49 -0.02 2.34 16 31 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 32 H 0.10 2.50 6.08 -51.93 -0.32 2.18 16 33 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 35 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 36 H 0.40 4.53 6.77 -40.82 -0.28 4.26 16 37 H 0.14 1.01 6.55 -52.49 -0.34 0.67 16 38 H 0.17 0.97 8.06 -52.49 -0.42 0.55 16 39 H 0.14 1.17 8.06 -52.49 -0.42 0.74 16 40 H 0.13 0.80 8.06 -52.48 -0.42 0.38 16 41 H 0.13 1.08 8.06 -52.49 -0.42 0.65 16 42 H 0.17 2.56 4.98 -52.49 -0.26 2.30 16 43 H 0.37 3.72 9.09 45.56 0.41 4.14 16 44 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.06 1.12 7.93 -51.93 -0.41 0.71 16 LS Contribution 367.36 15.07 5.54 5.54 Total: -1.00 -32.29 367.36 -9.77 -42.06 By element: Atomic # 1 Polarization: 14.76 SS G_CDS: -4.94 Total: 9.82 kcal Atomic # 6 Polarization: 4.62 SS G_CDS: -4.66 Total: -0.04 kcal Atomic # 7 Polarization: -54.92 SS G_CDS: -0.28 Total: -55.20 kcal Atomic # 8 Polarization: -17.65 SS G_CDS: -0.39 Total: -18.04 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.03 Total: 15.87 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.29 -9.77 -42.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090407514.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.920 kcal (2) G-P(sol) polarization free energy of solvation -32.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.061 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds