Wall clock time and date at job start Sat Apr 11 2020 06:17:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86801 * 120.00022 * 2 1 4 4 H 1.48500 * 109.46831 * 269.99634 * 3 2 1 5 5 H 1.48494 * 109.47321 * 29.99450 * 3 2 1 6 6 H 1.48500 * 109.47107 * 149.99890 * 3 2 1 7 7 C 1.38810 * 120.00039 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00643 * 196.48787 * 7 2 1 9 9 N 1.36945 * 119.99734 * 16.49399 * 7 2 1 10 10 C 1.46928 * 120.63147 * 28.37940 * 9 7 2 11 11 C 1.53191 * 108.77400 * 126.41560 * 10 9 7 12 12 C 1.53035 * 109.31218 * 54.63220 * 11 10 9 13 13 H 1.09004 * 109.45094 * 58.65376 * 12 11 10 14 14 N 1.46504 * 109.45627 * 178.61044 * 12 11 10 15 15 C 1.34772 * 120.00522 * 275.07024 * 14 12 11 16 16 O 1.21542 * 119.99596 * 0.02562 * 15 14 12 17 17 C 1.47901 * 120.00111 * 180.02562 * 15 14 12 18 18 C 1.38893 * 121.11420 * 354.42604 * 17 15 14 19 19 C 1.39269 * 119.57817 * 180.02562 * 18 17 15 20 20 N 1.30995 * 121.88688 * 359.97438 * 19 18 17 21 21 C 1.33532 * 121.82927 * 0.02562 * 20 19 18 22 22 C 1.40705 * 120.97573 * 179.97438 * 21 20 19 23 23 C 1.36061 * 119.74682 * 180.02562 * 22 21 20 24 24 C 1.39356 * 121.04843 * 359.97327 * 23 22 21 25 25 C 1.36245 * 120.84137 * 0.02685 * 24 23 22 26 26 C 1.40099 * 119.64193 * 359.72202 * 25 24 23 27 27 C 1.53041 * 109.54258 * 298.63179 * 12 11 10 28 28 H 1.08992 * 109.49527 * 301.38745 * 27 12 11 29 29 O 1.42895 * 109.49803 * 181.31662 * 27 12 11 30 30 C 1.46926 * 120.62774 * 208.40007 * 9 7 2 31 31 H 0.97001 * 119.99867 * 0.02562 * 1 2 3 32 32 H 1.09001 * 109.58634 * 6.62325 * 10 9 7 33 33 H 1.09001 * 109.58452 * 246.20430 * 10 9 7 34 34 H 1.09001 * 109.49571 * 294.67865 * 11 10 9 35 35 H 1.08997 * 109.49305 * 174.58666 * 11 10 9 36 36 H 0.97008 * 119.99456 * 95.07666 * 14 12 11 37 37 H 1.07993 * 120.20983 * 359.97438 * 18 17 15 38 38 H 1.07998 * 119.05613 * 180.02562 * 19 18 17 39 39 H 1.08008 * 120.13031 * 0.03795 * 22 21 20 40 40 H 1.07998 * 119.47566 * 180.02562 * 23 22 21 41 41 H 1.08010 * 119.57578 * 180.02562 * 24 23 22 42 42 H 1.08002 * 120.17757 * 180.02562 * 25 24 23 43 43 H 0.96704 * 114.00153 * 180.02562 * 29 27 12 44 44 H 1.09001 * 109.58269 * 113.79927 * 30 9 7 45 45 H 1.09001 * 109.58885 * 353.37727 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4476 2.6527 0.6999 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 3.0569 -1.2214 0.2660 9 7 1.3677 -2.3638 -0.3357 10 6 0.2208 -2.3463 -1.2538 11 6 0.4875 -3.3330 -2.3948 12 6 0.8025 -4.7112 -1.8088 13 1 -0.0362 -5.0465 -1.1986 14 7 1.0255 -5.6652 -2.8980 15 6 -0.0218 -6.2899 -3.4718 16 8 -1.1514 -6.0614 -3.0859 17 6 0.2035 -7.2535 -4.5710 18 6 1.4700 -7.4471 -5.1074 19 6 1.6457 -8.3623 -6.1424 20 7 0.6465 -9.0540 -6.6315 21 6 -0.5977 -8.9200 -6.1654 22 6 -1.6578 -9.6718 -6.7046 23 6 -2.9160 -9.5150 -6.2110 24 6 -3.1754 -8.6193 -5.1754 25 6 -2.1740 -7.8746 -4.6288 26 6 -0.8653 -8.0143 -5.1090 27 6 2.0608 -4.6235 -0.9422 28 1 2.8942 -4.2650 -1.5462 29 8 2.3716 -5.9169 -0.4203 30 6 1.8120 -3.6514 0.2153 31 1 -0.4850 0.8401 -0.0004 32 1 0.0936 -1.3430 -1.6605 33 1 -0.6809 -2.6424 -0.7178 34 1 1.3356 -2.9861 -2.9850 35 1 -0.3952 -3.4011 -3.0306 36 1 1.9272 -5.8474 -3.2062 37 1 2.3130 -6.8910 -4.7249 38 1 2.6341 -8.5065 -6.5529 39 1 -1.4736 -10.3708 -7.5071 40 1 -3.7264 -10.0946 -6.6278 41 1 -4.1832 -8.5141 -4.8015 42 1 -2.3870 -7.1839 -3.8263 43 1 3.1595 -5.9361 0.1402 44 1 1.0400 -4.0540 0.8711 45 1 2.7347 -3.5093 0.7780 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090407515.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:07 Heat of formation + Delta-G solvation = 2.356220 kcal Electronic energy + Delta-G solvation = -29301.913516 eV Core-core repulsion = 25285.103345 eV Total energy + Delta-G solvation = -4016.810171 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.26998 -39.64330 -38.01131 -37.28834 -35.48296 -34.54937 -33.63523 -32.03502 -30.76637 -30.48054 -29.74161 -28.58926 -25.79831 -24.70491 -23.76589 -23.02257 -22.43060 -21.73918 -20.65535 -19.62299 -18.33157 -17.79508 -17.53749 -17.09581 -16.57805 -15.98406 -15.67600 -15.14617 -15.00694 -14.88014 -14.70005 -14.21888 -14.09992 -14.00405 -13.88754 -13.46431 -13.28948 -13.17941 -12.81802 -12.37357 -12.17472 -11.99196 -11.81222 -11.65980 -11.55107 -11.16489 -10.93614 -10.75999 -10.66707 -10.42852 -10.35405 -10.31258 -10.00099 -9.83219 -9.66041 -9.31711 -9.02182 -8.93622 -8.54437 -8.41947 -6.82920 -5.90053 -3.35547 -0.09094 0.57227 1.56238 2.61734 3.03149 3.08874 3.31296 3.37994 3.39587 3.94728 4.00882 4.27158 4.36655 4.40802 4.49650 4.53014 4.64555 4.88330 5.00593 5.12609 5.19698 5.26714 5.31595 5.38850 5.42841 5.45162 5.56113 5.68263 5.81064 5.87615 5.89799 6.01395 6.11736 6.17081 6.31813 6.36627 6.41218 6.45589 6.58515 6.66112 6.69969 6.75912 7.21876 7.49523 7.55359 7.61027 7.67925 7.83645 8.19316 8.32487 9.07714 9.69666 10.25393 11.18485 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.019899 B = 0.002524 C = 0.002425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.773120 B =11092.787680 C =11545.796375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.006 3.994 3 Si 0.905 3.095 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.278 1.278 7 C -0.261 4.261 8 H 0.067 0.933 9 N -0.588 5.588 10 C 0.172 3.828 11 C -0.147 4.147 12 C 0.162 3.838 13 H 0.091 0.909 14 N -0.702 5.702 15 C 0.557 3.443 16 O -0.526 6.526 17 C -0.062 4.062 18 C -0.142 4.142 19 C 0.126 3.874 20 N -0.462 5.462 21 C 0.123 3.877 22 C -0.102 4.102 23 C -0.097 4.097 24 C -0.121 4.121 25 C -0.097 4.097 26 C -0.067 4.067 27 C 0.080 3.920 28 H 0.057 0.943 29 O -0.571 6.571 30 C 0.121 3.879 31 H 0.256 0.744 32 H 0.094 0.906 33 H 0.025 0.975 34 H 0.059 0.941 35 H 0.063 0.937 36 H 0.397 0.603 37 H 0.142 0.858 38 H 0.165 0.835 39 H 0.135 0.865 40 H 0.129 0.871 41 H 0.129 0.871 42 H 0.171 0.829 43 H 0.375 0.625 44 H 0.030 0.970 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.512 -17.575 -11.366 20.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.193 4.193 3 Si 0.735 3.265 4 H -0.213 1.213 5 H -0.216 1.216 6 H -0.204 1.204 7 C -0.390 4.390 8 H 0.085 0.915 9 N -0.312 5.312 10 C 0.045 3.955 11 C -0.188 4.188 12 C 0.059 3.941 13 H 0.109 0.891 14 N -0.352 5.352 15 C 0.343 3.657 16 O -0.404 6.404 17 C -0.074 4.074 18 C -0.163 4.163 19 C -0.046 4.046 20 N -0.170 5.170 21 C 0.002 3.998 22 C -0.121 4.121 23 C -0.117 4.117 24 C -0.139 4.139 25 C -0.115 4.115 26 C -0.070 4.070 27 C 0.019 3.981 28 H 0.075 0.925 29 O -0.376 6.376 30 C -0.007 4.007 31 H 0.066 0.934 32 H 0.112 0.888 33 H 0.043 0.957 34 H 0.078 0.922 35 H 0.082 0.918 36 H 0.232 0.768 37 H 0.160 0.840 38 H 0.182 0.818 39 H 0.153 0.847 40 H 0.147 0.853 41 H 0.147 0.853 42 H 0.188 0.812 43 H 0.222 0.778 44 H 0.048 0.952 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 0.103 -18.022 -12.058 21.684 hybrid contribution 1.354 1.535 0.788 2.193 sum 1.457 -16.487 -11.270 20.024 Atomic orbital electron populations 1.70023 1.05301 1.25826 1.53061 1.25097 0.95327 0.98578 1.00328 0.86253 0.79072 0.83427 0.77759 1.21316 1.21639 1.20377 1.19163 0.92418 0.84470 1.42996 0.91497 1.44048 1.35618 1.01324 1.50197 1.20834 0.88723 0.98168 0.87728 1.22627 1.01148 0.94157 1.00834 1.21115 0.97909 0.88862 0.86253 0.89067 1.46038 1.08941 1.43392 1.36784 1.18005 0.85311 0.80393 0.81961 1.90600 1.22151 1.64208 1.63440 1.20482 0.93782 0.96627 0.96461 1.22438 0.96865 0.99330 0.97624 1.22888 0.98222 0.91039 0.92465 1.67793 0.99250 1.22692 1.27305 1.18885 0.91692 0.95614 0.93633 1.20756 0.91156 0.99564 1.00583 1.21002 0.96703 0.97768 0.96187 1.21126 0.99981 0.96202 0.96593 1.22139 0.90745 0.98551 1.00083 1.18704 0.94552 0.96918 0.96800 1.22782 0.95833 0.83378 0.96153 0.92496 1.86479 1.50582 1.30590 1.69943 1.21527 0.98920 0.87378 0.92854 0.93370 0.88795 0.95713 0.92228 0.91805 0.76831 0.83998 0.81752 0.84695 0.85288 0.85306 0.81201 0.77848 0.95236 0.92052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.35 11.18 55.49 0.62 -24.73 16 2 C 0.01 0.16 4.93 -17.43 -0.09 0.08 16 3 Si 0.91 20.91 29.58 -169.99 -5.03 15.88 16 4 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 7 C -0.26 -6.80 9.58 -15.06 -0.14 -6.95 16 8 H 0.07 1.69 7.88 -52.49 -0.41 1.28 16 9 N -0.59 -13.93 2.99 -172.32 -0.52 -14.44 16 10 C 0.17 3.97 5.30 -3.71 -0.02 3.95 16 11 C -0.15 -2.77 5.65 -26.61 -0.15 -2.92 16 12 C 0.16 2.76 2.12 -67.89 -0.14 2.62 16 13 H 0.09 1.79 7.58 -51.93 -0.39 1.40 16 14 N -0.70 -9.95 4.87 -54.69 -0.27 -10.22 16 15 C 0.56 8.52 7.72 -12.31 -0.09 8.43 16 16 O -0.53 -9.54 13.19 5.33 0.07 -9.47 16 17 C -0.06 -0.82 5.94 -104.34 -0.62 -1.44 16 18 C -0.14 -1.42 9.60 -38.96 -0.37 -1.79 16 19 C 0.13 1.21 11.14 -17.52 -0.20 1.01 16 20 N -0.46 -5.55 10.30 -11.01 -0.11 -5.67 16 21 C 0.12 1.57 6.61 -84.87 -0.56 1.01 16 22 C -0.10 -1.08 9.98 -39.43 -0.39 -1.47 16 23 C -0.10 -0.90 9.94 -39.95 -0.40 -1.30 16 24 C -0.12 -1.29 9.96 -39.88 -0.40 -1.68 16 25 C -0.10 -1.30 9.25 -39.60 -0.37 -1.67 16 26 C -0.07 -0.92 5.76 -106.52 -0.61 -1.53 16 27 C 0.08 1.27 3.14 -26.61 -0.08 1.19 16 28 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 29 O -0.57 -8.02 13.16 -35.23 -0.46 -8.48 16 30 C 0.12 2.36 6.14 -3.71 -0.02 2.33 16 31 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 32 H 0.09 2.43 6.06 -51.93 -0.31 2.12 16 33 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 36 H 0.40 4.50 6.77 -40.82 -0.28 4.23 16 37 H 0.14 1.01 6.55 -52.49 -0.34 0.66 16 38 H 0.17 0.97 8.06 -52.49 -0.42 0.55 16 39 H 0.14 1.16 8.06 -52.48 -0.42 0.74 16 40 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 41 H 0.13 1.07 8.06 -52.48 -0.42 0.65 16 42 H 0.17 2.55 4.98 -52.49 -0.26 2.29 16 43 H 0.37 3.69 9.08 45.56 0.41 4.11 16 44 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.06 1.12 7.93 -51.93 -0.41 0.71 16 LS Contribution 367.45 15.07 5.54 5.54 Total: -1.00 -32.37 367.45 -9.76 -42.14 By element: Atomic # 1 Polarization: 14.52 SS G_CDS: -4.94 Total: 9.58 kcal Atomic # 6 Polarization: 4.54 SS G_CDS: -4.66 Total: -0.12 kcal Atomic # 7 Polarization: -54.78 SS G_CDS: -0.28 Total: -55.06 kcal Atomic # 8 Polarization: -17.56 SS G_CDS: -0.39 Total: -17.95 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.03 Total: 15.88 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.37 -9.76 -42.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090407515.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.494 kcal (2) G-P(sol) polarization free energy of solvation -32.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.138 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds