Wall clock time and date at job start Sat Apr 11 2020 06:17:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86806 * 119.99713 * 2 1 4 4 H 1.48503 * 109.47024 * 92.83206 * 3 2 1 5 5 H 1.48496 * 109.47254 * 212.83127 * 3 2 1 6 6 H 1.48501 * 109.46997 * 332.83229 * 3 2 1 7 7 C 1.38809 * 120.00367 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00155 * 18.54845 * 7 2 1 9 9 N 1.36932 * 119.99952 * 198.55022 * 7 2 1 10 10 C 1.46928 * 120.63442 * 209.77602 * 9 7 2 11 11 C 1.52756 * 109.01156 * 233.59085 * 10 9 7 12 12 C 1.53051 * 109.37809 * 305.58124 * 11 10 9 13 13 H 1.09002 * 109.44830 * 301.22556 * 12 11 10 14 14 N 1.46500 * 109.45653 * 181.26373 * 12 11 10 15 15 C 1.34783 * 120.00019 * 84.93335 * 14 12 11 16 16 O 1.21535 * 120.00084 * 359.97438 * 15 14 12 17 17 C 1.47900 * 119.99804 * 179.97438 * 15 14 12 18 18 C 1.38896 * 121.11489 * 1.18347 * 17 15 14 19 19 C 1.39265 * 119.58169 * 179.76809 * 18 17 15 20 20 N 1.31003 * 121.88206 * 0.49842 * 19 18 17 21 21 C 1.33530 * 121.82460 * 359.76733 * 20 19 18 22 22 C 1.40716 * 120.96964 * 179.97438 * 21 20 19 23 23 C 1.36059 * 119.74397 * 180.02562 * 22 21 20 24 24 C 1.39358 * 121.05257 * 359.97438 * 23 22 21 25 25 C 1.36247 * 120.83633 * 0.02562 * 24 23 22 26 26 C 1.40101 * 119.64496 * 359.95730 * 25 24 23 27 27 C 1.53039 * 109.53640 * 61.24335 * 12 11 10 28 28 H 1.08995 * 109.49423 * 178.67825 * 27 12 11 29 29 O 1.42901 * 109.49922 * 58.58583 * 27 12 11 30 30 C 1.46931 * 120.63299 * 30.05798 * 9 7 2 31 31 H 0.96998 * 120.00476 * 359.97438 * 1 2 3 32 32 H 1.09010 * 109.58277 * 353.42044 * 10 9 7 33 33 H 1.08996 * 109.58993 * 113.84337 * 10 9 7 34 34 H 1.09005 * 109.56321 * 185.55420 * 11 10 9 35 35 H 1.08989 * 109.39281 * 65.51060 * 11 10 9 36 36 H 0.97003 * 120.00130 * 264.92831 * 14 12 11 37 37 H 1.08000 * 120.20655 * 359.97195 * 18 17 15 38 38 H 1.07994 * 119.06441 * 180.23817 * 19 18 17 39 39 H 1.08008 * 120.12986 * 359.97438 * 22 21 20 40 40 H 1.07995 * 119.47322 * 180.02562 * 23 22 21 41 41 H 1.07993 * 119.57850 * 179.97438 * 24 23 22 42 42 H 1.08004 * 120.17210 * 180.02562 * 25 24 23 43 43 H 0.96697 * 114.00352 * 180.16088 * 29 27 12 44 44 H 1.08996 * 109.58958 * 246.15504 * 30 9 7 45 45 H 1.09004 * 109.58254 * 6.43825 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.5575 2.0119 1.3984 5 1 3.5164 1.4584 -0.7590 6 1 1.4188 2.6693 -0.6393 7 6 2.0103 -1.2021 -0.0005 8 1 1.5124 -2.1130 -0.2985 9 7 3.3263 -1.2330 0.3767 10 6 4.2435 -2.2327 -0.1872 11 6 4.9298 -2.9789 0.9554 12 6 5.5982 -1.9697 1.8920 13 1 6.3229 -1.3791 1.3314 14 7 6.2825 -2.6850 2.9719 15 6 7.5343 -3.1486 2.7859 16 8 8.0954 -2.9735 1.7221 17 6 8.2253 -3.8703 3.8764 18 6 7.5971 -4.1045 5.0929 19 6 8.2759 -4.7917 6.0961 20 7 9.5029 -5.2206 5.9326 21 6 10.1705 -5.0269 4.7925 22 6 11.4883 -5.4949 4.6365 23 6 12.1456 -5.2832 3.4641 24 6 11.5343 -4.6084 2.4091 25 6 10.2597 -4.1411 2.5240 26 6 9.5530 -4.3416 3.7169 27 6 4.5361 -1.0426 2.4873 28 1 5.0098 -0.3393 3.1721 29 8 3.5675 -1.8192 3.1949 30 6 3.8466 -0.2709 1.3578 31 1 -0.4851 0.8400 0.0004 32 1 3.6824 -2.9396 -0.7985 33 1 4.9959 -1.7346 -0.7986 34 1 5.6838 -3.6536 0.5499 35 1 4.1877 -3.5535 1.5097 36 1 5.8346 -2.8250 3.8209 37 1 6.5874 -3.7588 5.2585 38 1 7.7782 -4.9727 7.0372 39 1 11.9766 -6.0194 5.4447 40 1 13.1567 -5.6447 3.3491 41 1 12.0782 -4.4532 1.4891 42 1 9.7962 -3.6199 1.6993 43 1 2.8612 -1.2955 3.5973 44 1 4.5660 0.3905 0.8750 45 1 3.0240 0.3179 1.7638 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090407516.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:12 Heat of formation + Delta-G solvation = 10.354295 kcal Electronic energy + Delta-G solvation = -29501.318988 eV Core-core repulsion = 25484.855640 eV Total energy + Delta-G solvation = -4016.463349 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.36431 -39.80837 -38.26727 -37.36511 -35.09247 -34.69115 -33.73215 -32.21414 -30.85031 -30.59962 -29.93150 -29.31788 -25.88332 -24.66435 -23.83658 -23.17951 -22.82378 -21.70655 -20.77171 -19.75581 -18.43266 -17.89530 -17.62225 -17.31091 -16.39701 -15.82394 -15.68132 -15.39978 -15.24745 -15.01554 -14.68737 -14.37799 -14.34069 -14.18811 -14.15302 -13.51847 -13.43181 -13.34193 -12.80004 -12.50727 -12.47564 -12.06488 -11.92485 -11.79784 -11.63583 -11.53184 -11.08247 -10.80621 -10.73805 -10.54639 -10.45872 -10.35698 -10.11618 -9.58768 -9.55204 -9.41910 -9.09518 -9.01203 -8.67927 -8.51067 -7.01345 -6.01297 -3.39625 -0.17918 0.49979 1.47332 2.53104 2.90768 2.95761 3.18871 3.41239 3.43319 3.86640 3.94352 4.26154 4.33372 4.43175 4.44317 4.53391 4.56871 4.81600 4.86326 4.93235 5.04068 5.05686 5.22182 5.24401 5.27925 5.33287 5.48298 5.55528 5.63788 5.73661 5.79054 5.89800 5.99585 6.04350 6.15126 6.19940 6.23823 6.30629 6.32719 6.40213 6.53954 6.60150 6.65242 6.88889 7.39165 7.54211 7.87376 8.01154 8.06131 8.28004 8.86357 9.63799 10.01497 11.14801 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.024547 B = 0.002604 C = 0.002478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.390100 B =10749.053410 C =11298.162135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.023 3.977 3 Si 0.883 3.117 4 H -0.289 1.289 5 H -0.272 1.272 6 H -0.302 1.302 7 C -0.253 4.253 8 H 0.085 0.915 9 N -0.596 5.596 10 C 0.151 3.849 11 C -0.139 4.139 12 C 0.161 3.839 13 H 0.095 0.905 14 N -0.705 5.705 15 C 0.557 3.443 16 O -0.528 6.528 17 C -0.066 4.066 18 C -0.139 4.139 19 C 0.126 3.874 20 N -0.460 5.460 21 C 0.123 3.877 22 C -0.101 4.101 23 C -0.097 4.097 24 C -0.120 4.120 25 C -0.099 4.099 26 C -0.066 4.066 27 C 0.082 3.918 28 H 0.049 0.951 29 O -0.554 6.554 30 C 0.096 3.904 31 H 0.263 0.737 32 H 0.068 0.932 33 H 0.025 0.975 34 H 0.059 0.941 35 H 0.075 0.925 36 H 0.404 0.596 37 H 0.144 0.856 38 H 0.166 0.834 39 H 0.136 0.864 40 H 0.129 0.871 41 H 0.129 0.871 42 H 0.171 0.829 43 H 0.380 0.620 44 H 0.033 0.967 45 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.015 -7.970 11.688 24.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.176 4.176 3 Si 0.713 3.287 4 H -0.217 1.217 5 H -0.197 1.197 6 H -0.230 1.230 7 C -0.382 4.382 8 H 0.103 0.897 9 N -0.319 5.319 10 C 0.025 3.975 11 C -0.179 4.179 12 C 0.057 3.943 13 H 0.113 0.887 14 N -0.355 5.355 15 C 0.343 3.657 16 O -0.406 6.406 17 C -0.078 4.078 18 C -0.160 4.160 19 C -0.046 4.046 20 N -0.169 5.169 21 C 0.001 3.999 22 C -0.119 4.119 23 C -0.117 4.117 24 C -0.138 4.138 25 C -0.117 4.117 26 C -0.069 4.069 27 C 0.021 3.979 28 H 0.067 0.933 29 O -0.360 6.360 30 C -0.031 4.031 31 H 0.073 0.927 32 H 0.086 0.914 33 H 0.043 0.957 34 H 0.077 0.923 35 H 0.094 0.906 36 H 0.240 0.760 37 H 0.162 0.838 38 H 0.184 0.816 39 H 0.154 0.846 40 H 0.147 0.853 41 H 0.147 0.853 42 H 0.188 0.812 43 H 0.228 0.772 44 H 0.051 0.949 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 21.106 -8.685 11.294 25.465 hybrid contribution -0.664 1.859 0.089 1.976 sum 20.442 -6.826 11.383 24.373 Atomic orbital electron populations 1.69810 1.05662 1.26550 1.53092 1.25340 0.95242 0.97448 0.99566 0.87011 0.79860 0.84704 0.77107 1.21701 1.19695 1.23016 1.18902 0.83858 0.94477 1.40940 0.89697 1.44199 1.07587 1.35438 1.44653 1.20838 0.92232 0.91538 0.92913 1.22253 0.99606 0.98087 0.97957 1.21081 0.92292 0.93391 0.87507 0.88681 1.46105 1.14440 1.56696 1.18289 1.18068 0.81684 0.79067 0.86865 1.90582 1.65313 1.57778 1.26971 1.20435 0.94206 0.98508 0.94625 1.22487 1.01428 0.98860 0.93234 1.22915 0.90153 0.92761 0.98769 1.67806 1.08728 1.17720 1.22623 1.18895 0.94983 0.96951 0.89047 1.20774 0.92261 1.00444 0.98451 1.21007 1.00150 0.97599 0.92970 1.21127 0.95476 0.98078 0.99129 1.22138 0.94254 0.97494 0.97845 1.18694 0.93290 0.98958 0.95969 1.22551 0.89136 0.92245 0.94018 0.93299 1.86371 1.39856 1.37716 1.72034 1.22111 0.97879 0.92690 0.90402 0.92712 0.91365 0.95720 0.92270 0.90639 0.76007 0.83813 0.81648 0.84647 0.85261 0.85321 0.81193 0.77247 0.94932 0.89884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.94 13.97 55.49 0.78 -26.17 16 2 C 0.02 0.63 5.25 -17.43 -0.09 0.54 16 3 Si 0.88 21.40 24.35 -169.99 -4.14 17.26 16 4 H -0.29 -6.56 6.42 56.52 0.36 -6.19 16 5 H -0.27 -6.57 6.91 56.52 0.39 -6.18 16 6 H -0.30 -7.56 7.11 56.52 0.40 -7.15 16 7 C -0.25 -6.81 10.02 -15.06 -0.15 -6.96 16 8 H 0.09 2.48 8.06 -52.49 -0.42 2.06 16 9 N -0.60 -13.45 2.68 -172.58 -0.46 -13.91 16 10 C 0.15 2.95 6.49 -3.93 -0.03 2.93 16 11 C -0.14 -2.36 5.50 -26.83 -0.15 -2.51 16 12 C 0.16 2.49 2.20 -67.88 -0.15 2.34 16 13 H 0.10 1.55 7.58 -51.93 -0.39 1.16 16 14 N -0.71 -9.12 5.01 -54.69 -0.27 -9.39 16 15 C 0.56 7.65 7.73 -12.30 -0.10 7.56 16 16 O -0.53 -8.52 13.16 5.33 0.07 -8.45 16 17 C -0.07 -0.80 5.94 -104.34 -0.62 -1.42 16 18 C -0.14 -1.30 9.61 -38.96 -0.37 -1.67 16 19 C 0.13 1.14 11.14 -17.52 -0.20 0.95 16 20 N -0.46 -5.25 10.30 -11.01 -0.11 -5.36 16 21 C 0.12 1.47 6.61 -84.87 -0.56 0.91 16 22 C -0.10 -0.99 9.98 -39.43 -0.39 -1.38 16 23 C -0.10 -0.83 9.94 -39.95 -0.40 -1.23 16 24 C -0.12 -1.16 9.96 -39.88 -0.40 -1.56 16 25 C -0.10 -1.21 9.25 -39.60 -0.37 -1.58 16 26 C -0.07 -0.84 5.76 -106.52 -0.61 -1.46 16 27 C 0.08 1.30 3.38 -26.61 -0.09 1.21 16 28 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 29 O -0.55 -8.69 12.09 -35.23 -0.43 -9.12 16 30 C 0.10 1.92 3.85 -3.71 -0.01 1.90 16 31 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 32 H 0.07 1.34 7.93 -51.92 -0.41 0.93 16 33 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.07 1.38 7.61 -51.94 -0.40 0.98 16 36 H 0.40 4.41 6.39 -40.82 -0.26 4.15 16 37 H 0.14 0.96 6.51 -52.49 -0.34 0.62 16 38 H 0.17 0.91 8.06 -52.49 -0.42 0.49 16 39 H 0.14 1.09 8.06 -52.48 -0.42 0.66 16 40 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 41 H 0.13 0.95 8.06 -52.49 -0.42 0.52 16 42 H 0.17 2.30 4.96 -52.49 -0.26 2.04 16 43 H 0.38 5.17 9.08 45.56 0.41 5.58 16 44 H 0.03 0.65 7.18 -51.93 -0.37 0.28 16 45 H 0.08 1.78 4.56 -51.93 -0.24 1.54 16 LS Contribution 359.44 15.07 5.42 5.42 Total: -1.00 -32.78 359.44 -8.66 -41.44 By element: Atomic # 1 Polarization: 14.54 SS G_CDS: -4.83 Total: 9.72 kcal Atomic # 6 Polarization: 3.26 SS G_CDS: -4.68 Total: -1.43 kcal Atomic # 7 Polarization: -54.76 SS G_CDS: -0.08 Total: -54.84 kcal Atomic # 8 Polarization: -17.21 SS G_CDS: -0.36 Total: -17.57 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -4.14 Total: 17.26 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -32.78 -8.66 -41.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090407516.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.797 kcal (2) G-P(sol) polarization free energy of solvation -32.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.442 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds