Wall clock time and date at job start Sat Apr 11 2020 06:17:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86806 * 119.99713 * 2 1 4 4 H 1.48503 * 109.47024 * 92.83206 * 3 2 1 5 5 H 1.48496 * 109.47254 * 212.83127 * 3 2 1 6 6 H 1.48501 * 109.46997 * 332.83229 * 3 2 1 7 7 C 1.38809 * 120.00367 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00155 * 18.54845 * 7 2 1 9 9 N 1.36932 * 119.99952 * 198.55022 * 7 2 1 10 10 C 1.46928 * 120.63442 * 209.77602 * 9 7 2 11 11 C 1.52756 * 109.01156 * 233.59085 * 10 9 7 12 12 C 1.53051 * 109.37809 * 305.58124 * 11 10 9 13 13 H 1.09002 * 109.44830 * 301.22556 * 12 11 10 14 14 N 1.46500 * 109.45653 * 181.26373 * 12 11 10 15 15 C 1.34783 * 120.00019 * 84.93335 * 14 12 11 16 16 O 1.21535 * 120.00084 * 359.97438 * 15 14 12 17 17 C 1.47900 * 119.99804 * 179.97438 * 15 14 12 18 18 C 1.38896 * 121.11489 * 1.18347 * 17 15 14 19 19 C 1.39265 * 119.58169 * 179.76809 * 18 17 15 20 20 N 1.31003 * 121.88206 * 0.49842 * 19 18 17 21 21 C 1.33530 * 121.82460 * 359.76733 * 20 19 18 22 22 C 1.40716 * 120.96964 * 179.97438 * 21 20 19 23 23 C 1.36059 * 119.74397 * 180.02562 * 22 21 20 24 24 C 1.39358 * 121.05257 * 359.97438 * 23 22 21 25 25 C 1.36247 * 120.83633 * 0.02562 * 24 23 22 26 26 C 1.40101 * 119.64496 * 359.95730 * 25 24 23 27 27 C 1.53039 * 109.53640 * 61.24335 * 12 11 10 28 28 H 1.08995 * 109.49423 * 178.67825 * 27 12 11 29 29 O 1.42901 * 109.49922 * 58.58583 * 27 12 11 30 30 C 1.46931 * 120.63299 * 30.05798 * 9 7 2 31 31 H 0.96998 * 120.00476 * 359.97438 * 1 2 3 32 32 H 1.09010 * 109.58277 * 353.42044 * 10 9 7 33 33 H 1.08996 * 109.58993 * 113.84337 * 10 9 7 34 34 H 1.09005 * 109.56321 * 185.55420 * 11 10 9 35 35 H 1.08989 * 109.39281 * 65.51060 * 11 10 9 36 36 H 0.97003 * 120.00130 * 264.92831 * 14 12 11 37 37 H 1.08000 * 120.20655 * 359.97195 * 18 17 15 38 38 H 1.07994 * 119.06441 * 180.23817 * 19 18 17 39 39 H 1.08008 * 120.12986 * 359.97438 * 22 21 20 40 40 H 1.07995 * 119.47322 * 180.02562 * 23 22 21 41 41 H 1.07993 * 119.57850 * 179.97438 * 24 23 22 42 42 H 1.08004 * 120.17210 * 180.02562 * 25 24 23 43 43 H 0.96697 * 114.00352 * 180.16088 * 29 27 12 44 44 H 1.08996 * 109.58958 * 246.15504 * 30 9 7 45 45 H 1.09004 * 109.58254 * 6.43825 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.5575 2.0119 1.3984 5 1 3.5164 1.4584 -0.7590 6 1 1.4188 2.6693 -0.6393 7 6 2.0103 -1.2021 -0.0005 8 1 1.5124 -2.1130 -0.2985 9 7 3.3263 -1.2330 0.3767 10 6 4.2435 -2.2327 -0.1872 11 6 4.9298 -2.9789 0.9554 12 6 5.5982 -1.9697 1.8920 13 1 6.3229 -1.3791 1.3314 14 7 6.2825 -2.6850 2.9719 15 6 7.5343 -3.1486 2.7859 16 8 8.0954 -2.9735 1.7221 17 6 8.2253 -3.8703 3.8764 18 6 7.5971 -4.1045 5.0929 19 6 8.2759 -4.7917 6.0961 20 7 9.5029 -5.2206 5.9326 21 6 10.1705 -5.0269 4.7925 22 6 11.4883 -5.4949 4.6365 23 6 12.1456 -5.2832 3.4641 24 6 11.5343 -4.6084 2.4091 25 6 10.2597 -4.1411 2.5240 26 6 9.5530 -4.3416 3.7169 27 6 4.5361 -1.0426 2.4873 28 1 5.0098 -0.3393 3.1721 29 8 3.5675 -1.8192 3.1949 30 6 3.8466 -0.2709 1.3578 31 1 -0.4851 0.8400 0.0004 32 1 3.6824 -2.9396 -0.7985 33 1 4.9959 -1.7346 -0.7986 34 1 5.6838 -3.6536 0.5499 35 1 4.1877 -3.5535 1.5097 36 1 5.8346 -2.8250 3.8209 37 1 6.5874 -3.7588 5.2585 38 1 7.7782 -4.9727 7.0372 39 1 11.9766 -6.0194 5.4447 40 1 13.1567 -5.6447 3.3491 41 1 12.0782 -4.4532 1.4891 42 1 9.7962 -3.6199 1.6993 43 1 2.8612 -1.2955 3.5973 44 1 4.5660 0.3905 0.8750 45 1 3.0240 0.3179 1.7638 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090407516.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:11 Heat of formation + Delta-G solvation = -14.353956 kcal Electronic energy + Delta-G solvation = -29502.390419 eV Core-core repulsion = 25484.855640 eV Total energy + Delta-G solvation = -4017.534779 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.20666 -40.92325 -39.56886 -38.09945 -36.63719 -35.89741 -34.64084 -33.98252 -32.03022 -31.54178 -31.15509 -30.57143 -27.27473 -25.87914 -24.63540 -24.56093 -23.89659 -23.14023 -21.80180 -21.16754 -19.44034 -19.05847 -18.60769 -18.44787 -17.69082 -17.27010 -16.86675 -16.58260 -16.29950 -16.02708 -15.89634 -15.67024 -15.59322 -15.30542 -14.89991 -14.86673 -14.63480 -14.36710 -14.18873 -14.11082 -13.96369 -13.42433 -13.04333 -12.80054 -12.70505 -12.64158 -12.42744 -12.32868 -12.20167 -12.00756 -11.88916 -11.57228 -11.45421 -11.37347 -10.93647 -10.65021 -10.35748 -10.18622 -9.82332 -9.30325 -8.89813 -8.14826 -5.49964 -0.97683 -0.23825 0.65368 1.26647 1.43840 1.51597 1.70581 1.86318 2.07483 2.40790 3.02081 3.07861 3.25680 3.28321 3.30883 3.46001 3.61805 3.67012 3.72244 3.85281 3.90998 4.11060 4.16828 4.21055 4.23644 4.39720 4.51237 4.52086 4.53960 4.62942 4.70855 4.74407 4.75091 4.79309 4.94375 5.02239 5.04783 5.11032 5.33398 5.33892 5.41395 5.48904 5.56668 5.87597 5.87898 6.14099 6.38554 6.78779 6.82402 6.93892 7.03678 7.60285 8.01158 9.05216 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.024547 B = 0.002604 C = 0.002478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.390100 B =10749.053410 C =11298.162135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.957 5.957 2 C -0.031 4.031 3 Si 0.946 3.054 4 H -0.259 1.259 5 H -0.269 1.269 6 H -0.314 1.314 7 C -0.242 4.242 8 H 0.045 0.955 9 N -0.608 5.608 10 C 0.147 3.853 11 C -0.125 4.125 12 C 0.166 3.834 13 H 0.091 0.909 14 N -0.694 5.694 15 C 0.558 3.442 16 O -0.557 6.557 17 C -0.092 4.092 18 C -0.122 4.122 19 C 0.125 3.875 20 N -0.475 5.475 21 C 0.101 3.899 22 C -0.107 4.107 23 C -0.093 4.093 24 C -0.114 4.114 25 C -0.130 4.130 26 C -0.086 4.086 27 C 0.095 3.905 28 H 0.085 0.915 29 O -0.561 6.561 30 C 0.087 3.913 31 H 0.262 0.738 32 H 0.055 0.945 33 H 0.033 0.967 34 H 0.063 0.937 35 H 0.062 0.938 36 H 0.416 0.584 37 H 0.173 0.827 38 H 0.204 0.796 39 H 0.153 0.847 40 H 0.164 0.836 41 H 0.150 0.850 42 H 0.152 0.848 43 H 0.390 0.610 44 H 0.040 0.960 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.540 -7.899 14.075 27.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.226 4.226 3 Si 0.775 3.225 4 H -0.185 1.185 5 H -0.194 1.194 6 H -0.244 1.244 7 C -0.372 4.372 8 H 0.063 0.937 9 N -0.332 5.332 10 C 0.022 3.978 11 C -0.165 4.165 12 C 0.062 3.938 13 H 0.108 0.892 14 N -0.345 5.345 15 C 0.346 3.654 16 O -0.437 6.437 17 C -0.103 4.103 18 C -0.142 4.142 19 C -0.047 4.047 20 N -0.183 5.183 21 C -0.020 4.020 22 C -0.125 4.125 23 C -0.113 4.113 24 C -0.132 4.132 25 C -0.148 4.148 26 C -0.089 4.089 27 C 0.033 3.967 28 H 0.103 0.897 29 O -0.368 6.368 30 C -0.038 4.038 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.051 0.949 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.254 0.746 37 H 0.190 0.810 38 H 0.221 0.779 39 H 0.170 0.830 40 H 0.182 0.818 41 H 0.167 0.833 42 H 0.169 0.831 43 H 0.239 0.761 44 H 0.058 0.942 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 23.675 -8.630 13.726 28.695 hybrid contribution -1.417 1.699 -0.647 2.305 sum 22.258 -6.931 13.079 26.731 Atomic orbital electron populations 1.69948 1.07437 1.27232 1.55695 1.25921 0.95779 1.00775 1.00128 0.85968 0.78076 0.79941 0.78509 1.18529 1.19412 1.24354 1.18747 0.85584 0.93083 1.39768 0.93696 1.44254 1.06438 1.36541 1.45983 1.20923 0.91879 0.91046 0.93968 1.22035 0.99118 0.98074 0.97228 1.20839 0.92158 0.92948 0.87881 0.89155 1.45843 1.14179 1.56399 1.18094 1.18333 0.81537 0.78588 0.86935 1.90582 1.65989 1.58825 1.28313 1.20353 0.94538 1.00134 0.95263 1.22829 1.02290 0.97177 0.91913 1.23576 0.89536 0.91582 0.99976 1.67864 1.09797 1.18230 1.22450 1.19199 0.96027 0.97647 0.89163 1.21101 0.91730 1.00224 0.99465 1.21358 1.01444 0.96541 0.91924 1.21441 0.94625 0.96781 1.00304 1.22060 0.95661 0.99381 0.97672 1.18882 0.93852 0.99666 0.96454 1.22384 0.88840 0.92368 0.93059 0.89702 1.86354 1.40330 1.38248 1.71863 1.22237 0.97806 0.92658 0.91141 0.92924 0.92594 0.94876 0.91811 0.91899 0.74606 0.81004 0.77892 0.82980 0.81809 0.83267 0.83135 0.76076 0.94173 0.91186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -58.39 13.97 21.65 0.30 -58.09 16 2 C -0.03 -1.76 5.25 84.86 0.45 -1.31 16 3 Si 0.95 44.16 24.35 68.60 1.67 45.83 16 4 H -0.26 -10.77 6.42 99.48 0.64 -10.13 16 5 H -0.27 -12.32 6.91 99.48 0.69 -11.63 16 6 H -0.31 -15.24 7.11 99.48 0.71 -14.53 16 7 C -0.24 -13.33 10.02 84.03 0.84 -12.49 16 8 H 0.05 2.78 8.06 -2.91 -0.02 2.75 16 9 N -0.61 -27.32 2.68 -699.93 -1.88 -29.20 16 10 C 0.15 5.77 6.49 86.22 0.56 6.33 16 11 C -0.12 -4.14 5.50 30.53 0.17 -3.97 16 12 C 0.17 4.83 2.20 45.02 0.10 4.93 16 13 H 0.09 2.78 7.58 -2.39 -0.02 2.77 16 14 N -0.69 -16.48 5.01 -445.21 -2.23 -18.71 16 15 C 0.56 14.80 7.73 86.80 0.67 15.47 16 16 O -0.56 -18.01 13.16 -3.83 -0.05 -18.06 16 17 C -0.09 -2.11 5.94 -19.68 -0.12 -2.23 16 18 C -0.12 -1.95 9.61 22.67 0.22 -1.73 16 19 C 0.13 1.91 11.14 85.06 0.95 2.85 16 20 N -0.47 -9.88 10.30 -188.74 -1.94 -11.82 16 21 C 0.10 2.29 6.61 40.34 0.27 2.55 16 22 C -0.11 -1.91 9.98 22.37 0.22 -1.68 16 23 C -0.09 -1.38 9.94 22.03 0.22 -1.16 16 24 C -0.11 -2.06 9.96 22.08 0.22 -1.84 16 25 C -0.13 -3.17 9.25 22.26 0.21 -2.97 16 26 C -0.09 -2.14 5.76 -21.10 -0.12 -2.26 16 27 C 0.09 2.74 3.38 30.67 0.10 2.84 16 28 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 29 O -0.56 -16.24 12.09 -148.98 -1.80 -18.04 16 30 C 0.09 3.31 3.85 86.36 0.33 3.64 16 31 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 32 H 0.06 2.27 7.93 -2.38 -0.02 2.25 16 33 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.06 2.06 8.14 -2.38 -0.02 2.04 16 35 H 0.06 2.25 7.61 -2.39 -0.02 2.24 16 36 H 0.42 7.80 6.39 -92.71 -0.59 7.21 16 37 H 0.17 1.64 6.51 -2.91 -0.02 1.62 16 38 H 0.20 1.38 8.06 -2.91 -0.02 1.36 16 39 H 0.15 2.09 8.06 -2.91 -0.02 2.06 16 40 H 0.16 1.22 8.06 -2.91 -0.02 1.19 16 41 H 0.15 1.94 8.06 -2.91 -0.02 1.92 16 42 H 0.15 4.25 4.96 -2.92 -0.01 4.24 16 43 H 0.39 9.69 9.08 -74.06 -0.67 9.01 16 44 H 0.04 1.49 7.18 -2.39 -0.02 1.47 16 45 H 0.07 2.84 4.56 -2.39 -0.01 2.83 16 Total: -1.00 -73.94 359.44 -0.94 -74.88 By element: Atomic # 1 Polarization: 26.54 SS G_CDS: -0.30 Total: 26.24 kcal Atomic # 6 Polarization: 1.70 SS G_CDS: 5.28 Total: 6.98 kcal Atomic # 7 Polarization: -112.08 SS G_CDS: -5.75 Total: -117.83 kcal Atomic # 8 Polarization: -34.25 SS G_CDS: -1.85 Total: -36.11 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 1.67 Total: 45.83 kcal Total: -73.94 -0.94 -74.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090407516.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.528 kcal (2) G-P(sol) polarization free energy of solvation -73.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds