Wall clock time and date at job start Sat Apr 11 2020 06:17:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86801 * 119.99637 * 2 1 4 4 H 1.48507 * 109.47255 * 267.08457 * 3 2 1 5 5 H 1.48504 * 109.47194 * 27.08308 * 3 2 1 6 6 H 1.48500 * 109.47261 * 147.08335 * 3 2 1 7 7 C 1.38809 * 120.00383 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99947 * 340.16092 * 7 2 1 9 9 N 1.36938 * 119.99943 * 160.15489 * 7 2 1 10 10 C 1.46925 * 120.62914 * 331.23872 * 9 7 2 11 11 C 1.53189 * 108.78100 * 233.33368 * 10 9 7 12 12 C 1.53045 * 109.31349 * 305.37260 * 11 10 9 13 13 H 1.09000 * 109.45391 * 301.35678 * 12 11 10 14 14 N 1.46494 * 109.46123 * 181.38265 * 12 11 10 15 15 C 1.34779 * 120.00134 * 84.99650 * 14 12 11 16 16 O 1.21581 * 119.99780 * 359.97438 * 15 14 12 17 17 C 1.47557 * 120.00033 * 180.02562 * 15 14 12 18 18 C 1.38695 * 120.38300 * 0.25338 * 17 15 14 19 19 C 1.38978 * 120.53454 * 179.97438 * 18 17 15 20 20 C 1.36207 * 121.23431 * 0.02562 * 19 18 17 21 21 C 1.40717 * 120.20264 * 359.97438 * 20 19 18 22 22 N 1.33687 * 120.93859 * 179.97438 * 21 20 19 23 23 C 1.31063 * 121.34006 * 180.02562 * 22 21 20 24 24 C 1.39339 * 121.70732 * 0.02562 * 23 22 21 25 25 C 1.36676 * 119.86653 * 359.97438 * 24 23 22 26 26 C 1.40466 * 118.17312 * 359.74429 * 25 24 23 27 27 C 1.53038 * 109.53648 * 61.35699 * 12 11 10 28 28 H 1.09000 * 109.49704 * 58.62741 * 27 12 11 29 29 O 1.42900 * 109.49713 * 178.68483 * 27 12 11 30 30 C 1.46923 * 120.63077 * 150.96812 * 9 7 2 31 31 H 0.96993 * 120.00388 * 359.97438 * 1 2 3 32 32 H 1.09002 * 109.58949 * 353.12968 * 10 9 7 33 33 H 1.09006 * 109.58248 * 113.55055 * 10 9 7 34 34 H 1.09006 * 109.49426 * 65.31772 * 11 10 9 35 35 H 1.08997 * 109.50445 * 185.38429 * 11 10 9 36 36 H 0.97001 * 119.99778 * 265.00023 * 14 12 11 37 37 H 1.07999 * 119.73503 * 359.97438 * 18 17 15 38 38 H 1.07998 * 119.38057 * 180.02562 * 19 18 17 39 39 H 1.08000 * 119.89772 * 180.02562 * 20 19 18 40 40 H 1.08002 * 119.15074 * 179.97438 * 23 22 21 41 41 H 1.08002 * 120.06616 * 179.97438 * 24 23 22 42 42 H 1.08004 * 120.91606 * 180.02562 * 25 24 23 43 43 H 0.96696 * 114.00406 * 180.02562 * 29 27 12 44 44 H 1.09000 * 109.58217 * 246.45389 * 30 9 7 45 45 H 1.09000 * 109.58710 * 6.86936 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.5593 2.0109 -1.3983 5 1 1.4180 2.6697 0.6374 6 1 3.5155 1.4589 0.7608 7 6 2.0103 -1.2021 -0.0005 8 1 1.5185 -2.1098 0.3165 9 7 3.3187 -1.2370 -0.4031 10 6 3.8265 -0.2672 -1.3831 11 6 4.4960 -1.0300 -2.5305 12 6 5.5645 -1.9660 -1.9607 13 1 6.2995 -1.3828 -1.4059 14 7 6.2296 -2.6729 -3.0579 15 6 7.2630 -2.0961 -3.7029 16 8 7.6429 -0.9889 -3.3743 17 6 7.9325 -2.8079 -4.8085 18 6 7.5016 -4.0686 -5.1940 19 6 8.1296 -4.7416 -6.2352 20 6 9.1796 -4.1875 -6.9028 21 6 9.6508 -2.9104 -6.5461 22 7 10.6805 -2.3529 -7.1910 23 6 11.1261 -1.1642 -6.8650 24 6 10.5518 -0.4244 -5.8333 25 6 9.4954 -0.9376 -5.1341 26 6 9.0184 -2.2094 -5.4920 27 6 4.9076 -2.9819 -1.0234 28 1 4.1552 -3.5491 -1.5715 29 8 5.9014 -3.8745 -0.5157 30 6 4.2428 -2.2413 0.1410 31 1 -0.4850 0.8400 0.0004 32 1 2.9992 0.3263 -1.7724 33 1 4.5554 0.3875 -0.9053 34 1 3.7470 -1.6151 -3.0642 35 1 4.9606 -0.3215 -3.2163 36 1 5.9262 -3.5560 -3.3203 37 1 6.6714 -4.5310 -4.6809 38 1 7.7785 -5.7223 -6.5203 39 1 9.6514 -4.7296 -7.7090 40 1 11.9606 -0.7476 -7.4095 41 1 10.9406 0.5525 -5.5867 42 1 9.0371 -0.3787 -4.3316 43 1 5.5552 -4.5472 0.0865 44 1 5.0056 -1.7476 0.7432 45 1 3.6903 -2.9504 0.7574 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090471588.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:23 Heat of formation + Delta-G solvation = 8.795531 kcal Electronic energy + Delta-G solvation = -29430.141241 eV Core-core repulsion = 25413.610299 eV Total energy + Delta-G solvation = -4016.530942 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.29515 -39.82501 -38.27242 -37.15341 -35.71116 -34.69559 -33.51164 -32.24459 -30.95917 -30.81100 -29.87326 -29.10624 -25.58241 -24.68834 -23.71833 -23.35199 -22.83115 -21.86391 -20.68753 -19.90059 -18.47519 -17.86063 -17.24105 -17.09552 -16.70311 -16.30748 -16.13865 -15.28602 -15.11160 -15.02867 -14.64549 -14.42726 -14.34241 -14.13972 -13.90611 -13.42417 -13.33399 -13.10187 -12.77659 -12.59081 -12.39114 -12.35403 -12.08790 -11.94882 -11.66320 -11.59774 -11.25001 -11.06788 -10.69414 -10.38583 -10.26756 -10.18609 -9.96249 -9.91377 -9.60778 -9.35656 -9.09209 -9.00748 -8.69897 -8.52048 -7.11458 -6.05193 -3.45105 -0.11537 0.54201 1.53487 2.41533 3.03156 3.09588 3.26853 3.44186 3.47134 3.90172 3.98662 4.18381 4.37148 4.41916 4.44724 4.53859 4.63435 4.81171 4.83837 4.85937 5.05278 5.06300 5.17344 5.27251 5.32158 5.48543 5.49430 5.56455 5.67559 5.68781 5.72831 5.82252 5.94063 5.98377 6.09483 6.12993 6.22214 6.32740 6.34678 6.45904 6.49261 6.53929 6.62441 6.72811 7.45298 7.62914 7.70890 7.86632 8.15478 8.21581 8.80325 9.59708 9.95048 11.10229 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.018265 B = 0.002781 C = 0.002575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1532.638743 B =10065.175055 C =10871.186122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.028 3.972 3 Si 0.883 3.117 4 H -0.284 1.284 5 H -0.301 1.301 6 H -0.271 1.271 7 C -0.268 4.268 8 H 0.086 0.914 9 N -0.602 5.602 10 C 0.124 3.876 11 C -0.140 4.140 12 C 0.161 3.839 13 H 0.092 0.908 14 N -0.705 5.705 15 C 0.560 3.440 16 O -0.536 6.536 17 C -0.106 4.106 18 C -0.075 4.075 19 C -0.111 4.111 20 C -0.069 4.069 21 C 0.118 3.882 22 N -0.480 5.480 23 C 0.132 3.868 24 C -0.181 4.181 25 C -0.059 4.059 26 C -0.067 4.067 27 C 0.079 3.921 28 H 0.062 0.938 29 O -0.570 6.570 30 C 0.123 3.877 31 H 0.265 0.735 32 H 0.082 0.918 33 H 0.030 0.970 34 H 0.069 0.931 35 H 0.068 0.932 36 H 0.398 0.602 37 H 0.133 0.867 38 H 0.138 0.862 39 H 0.139 0.861 40 H 0.159 0.841 41 H 0.138 0.862 42 H 0.181 0.819 43 H 0.377 0.623 44 H 0.034 0.966 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.404 -8.915 -12.181 23.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.172 4.172 3 Si 0.713 3.287 4 H -0.212 1.212 5 H -0.229 1.229 6 H -0.196 1.196 7 C -0.396 4.396 8 H 0.104 0.896 9 N -0.327 5.327 10 C -0.001 4.001 11 C -0.181 4.181 12 C 0.058 3.942 13 H 0.110 0.890 14 N -0.354 5.354 15 C 0.348 3.652 16 O -0.415 6.415 17 C -0.110 4.110 18 C -0.094 4.094 19 C -0.130 4.130 20 C -0.088 4.088 21 C -0.003 4.003 22 N -0.188 5.188 23 C -0.040 4.040 24 C -0.201 4.201 25 C -0.084 4.084 26 C -0.070 4.070 27 C 0.018 3.982 28 H 0.080 0.920 29 O -0.374 6.374 30 C -0.004 4.004 31 H 0.074 0.926 32 H 0.100 0.900 33 H 0.047 0.953 34 H 0.088 0.912 35 H 0.086 0.914 36 H 0.234 0.766 37 H 0.151 0.849 38 H 0.155 0.845 39 H 0.156 0.844 40 H 0.176 0.824 41 H 0.156 0.844 42 H 0.197 0.803 43 H 0.224 0.776 44 H 0.052 0.948 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 19.191 -8.239 -12.941 24.569 hybrid contribution -0.510 0.666 0.844 1.190 sum 18.681 -7.572 -12.097 23.508 Atomic orbital electron populations 1.69813 1.05745 1.26829 1.52313 1.25307 0.95237 0.97700 0.98918 0.87014 0.79796 0.84386 0.77531 1.21158 1.22941 1.19628 1.18866 0.84219 0.94762 1.41717 0.89597 1.44333 1.07913 1.34796 1.45644 1.21439 0.97510 0.92115 0.89082 1.22433 0.97242 0.98688 0.99722 1.21026 0.94630 0.92716 0.85874 0.88997 1.45981 1.33041 1.21063 1.35300 1.18062 0.79819 0.85527 0.81822 1.90546 1.64526 1.19949 1.66529 1.19946 0.97636 0.95582 0.97839 1.21462 0.98688 0.93238 0.96050 1.20831 0.95943 1.00577 0.95681 1.20992 0.95662 0.92957 0.99181 1.18857 0.93262 0.95023 0.93193 1.68048 1.11385 1.11975 1.27421 1.23011 0.97484 0.89755 0.93782 1.22077 0.98210 1.02012 0.97796 1.22749 0.93510 0.93750 0.98389 1.18649 0.96060 0.95754 0.96541 1.22730 0.89150 0.90485 0.95803 0.92019 1.86475 1.37261 1.46726 1.66976 1.21560 0.93029 0.92639 0.93151 0.92557 0.90004 0.95254 0.91202 0.91356 0.76644 0.84880 0.84465 0.84351 0.82397 0.84374 0.80254 0.77611 0.94798 0.91091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.94 13.97 55.49 0.78 -26.16 16 2 C 0.03 0.79 5.23 -17.43 -0.09 0.70 16 3 Si 0.88 21.95 24.36 -169.99 -4.14 17.81 16 4 H -0.28 -6.79 6.39 56.52 0.36 -6.43 16 5 H -0.30 -7.63 7.11 56.52 0.40 -7.23 16 6 H -0.27 -6.71 6.96 56.52 0.39 -6.32 16 7 C -0.27 -7.13 10.03 -15.06 -0.15 -7.29 16 8 H 0.09 2.42 8.06 -52.49 -0.42 2.00 16 9 N -0.60 -13.54 2.75 -172.33 -0.47 -14.01 16 10 C 0.12 2.65 4.20 -3.71 -0.02 2.63 16 11 C -0.14 -2.47 5.65 -26.61 -0.15 -2.62 16 12 C 0.16 2.57 2.12 -67.89 -0.14 2.43 16 13 H 0.09 1.66 7.58 -51.93 -0.39 1.27 16 14 N -0.70 -9.40 4.87 -54.80 -0.27 -9.67 16 15 C 0.56 8.10 7.71 -12.46 -0.10 8.00 16 16 O -0.54 -9.16 13.04 5.29 0.07 -9.09 16 17 C -0.11 -1.32 5.90 -104.66 -0.62 -1.93 16 18 C -0.08 -0.70 9.53 -39.14 -0.37 -1.08 16 19 C -0.11 -0.89 9.92 -40.04 -0.40 -1.28 16 20 C -0.07 -0.66 9.96 -39.38 -0.39 -1.05 16 21 C 0.12 1.43 6.60 -84.87 -0.56 0.87 16 22 N -0.48 -5.72 10.34 -10.99 -0.11 -5.84 16 23 C 0.13 1.29 11.15 -17.47 -0.19 1.10 16 24 C -0.18 -1.83 10.03 -39.74 -0.40 -2.23 16 25 C -0.06 -0.75 9.30 -39.31 -0.37 -1.12 16 26 C -0.07 -0.88 5.76 -106.54 -0.61 -1.49 16 27 C 0.08 1.19 3.14 -26.62 -0.08 1.11 16 28 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 29 O -0.57 -7.45 13.16 -35.23 -0.46 -7.92 16 30 C 0.12 2.25 6.14 -3.72 -0.02 2.23 16 31 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 32 H 0.08 1.90 4.50 -51.93 -0.23 1.67 16 33 H 0.03 0.63 7.22 -51.93 -0.38 0.26 16 34 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 35 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.40 4.26 6.64 -40.82 -0.27 3.99 16 37 H 0.13 0.92 6.38 -52.49 -0.33 0.59 16 38 H 0.14 0.67 8.06 -52.49 -0.42 0.25 16 39 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 40 H 0.16 0.99 8.06 -52.49 -0.42 0.57 16 41 H 0.14 1.01 8.06 -52.49 -0.42 0.59 16 42 H 0.18 2.53 4.93 -52.53 -0.26 2.27 16 43 H 0.38 3.40 9.08 45.56 0.41 3.81 16 44 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.07 1.23 7.93 -51.93 -0.41 0.82 16 LS Contribution 360.76 15.07 5.44 5.44 Total: -1.00 -33.62 360.76 -8.70 -42.32 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: -4.85 Total: 8.13 kcal Atomic # 6 Polarization: 3.66 SS G_CDS: -4.67 Total: -1.01 kcal Atomic # 7 Polarization: -55.60 SS G_CDS: -0.08 Total: -55.68 kcal Atomic # 8 Polarization: -16.61 SS G_CDS: -0.39 Total: -17.00 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -4.14 Total: 17.81 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -33.62 -8.70 -42.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090471588.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.117 kcal (2) G-P(sol) polarization free energy of solvation -33.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.321 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds