Wall clock time and date at job start Sat Apr 11 2020 06:17:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 119.99953 * 2 1 4 4 H 1.48501 * 109.47197 * 275.15282 * 3 2 1 5 5 H 1.48494 * 109.47110 * 35.15238 * 3 2 1 6 6 H 1.48500 * 109.47162 * 155.15779 * 3 2 1 7 7 C 1.38814 * 120.00018 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00048 * 340.56002 * 7 2 1 9 9 N 1.36936 * 120.00039 * 160.55659 * 7 2 1 10 10 C 1.46918 * 120.63399 * 151.90670 * 9 7 2 11 11 C 1.53187 * 108.78019 * 126.41190 * 10 9 7 12 12 C 1.53042 * 109.31280 * 54.63617 * 11 10 9 13 13 H 1.09002 * 109.45635 * 58.64324 * 12 11 10 14 14 N 1.46497 * 109.45953 * 178.61491 * 12 11 10 15 15 C 1.34771 * 120.00413 * 275.02638 * 14 12 11 16 16 O 1.21597 * 119.99657 * 0.02562 * 15 14 12 17 17 C 1.47554 * 120.00522 * 180.02562 * 15 14 12 18 18 C 1.38693 * 120.38231 * 354.43584 * 17 15 14 19 19 C 1.38968 * 120.53451 * 179.97438 * 18 17 15 20 20 C 1.36208 * 121.23955 * 0.02562 * 19 18 17 21 21 C 1.40716 * 120.20238 * 359.97069 * 20 19 18 22 22 N 1.33678 * 120.94680 * 179.97438 * 21 20 19 23 23 C 1.31064 * 121.34928 * 179.97438 * 22 21 20 24 24 C 1.39351 * 121.69856 * 0.04616 * 23 22 21 25 25 C 1.36674 * 119.87052 * 359.97438 * 24 23 22 26 26 C 1.40466 * 118.16772 * 0.02562 * 25 24 23 27 27 C 1.53041 * 109.52311 * 298.62952 * 12 11 10 28 28 H 1.08996 * 109.50112 * 301.41671 * 27 12 11 29 29 O 1.42903 * 109.49476 * 181.32113 * 27 12 11 30 30 C 1.46927 * 120.63070 * 331.92655 * 9 7 2 31 31 H 0.96997 * 119.99921 * 359.97438 * 1 2 3 32 32 H 1.09008 * 109.58775 * 6.62275 * 10 9 7 33 33 H 1.09002 * 109.58767 * 246.20515 * 10 9 7 34 34 H 1.09003 * 109.49998 * 294.68377 * 11 10 9 35 35 H 1.09003 * 109.52563 * 174.60466 * 11 10 9 36 36 H 0.97000 * 119.99934 * 95.03232 * 14 12 11 37 37 H 1.07996 * 119.73590 * 0.25647 * 18 17 15 38 38 H 1.07996 * 119.38442 * 179.97438 * 19 18 17 39 39 H 1.07999 * 119.90653 * 180.02562 * 20 19 18 40 40 H 1.07997 * 119.15140 * 180.02562 * 23 22 21 41 41 H 1.08000 * 120.06260 * 179.97438 * 24 23 22 42 42 H 1.07998 * 120.91178 * 180.02562 * 25 24 23 43 43 H 0.96699 * 114.00074 * 179.97438 * 29 27 12 44 44 H 1.09004 * 109.58792 * 353.37724 * 30 9 7 45 45 H 1.08994 * 109.58779 * 113.65568 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3888 2.1093 -1.3944 5 1 1.5063 2.6187 0.8061 6 1 3.5980 1.4112 0.5882 7 6 2.0103 -1.2022 -0.0005 8 1 1.5164 -2.1110 0.3104 9 7 3.3211 -1.2358 -0.3953 10 6 4.2368 -2.2548 0.1354 11 6 4.9009 -2.9806 -1.0388 12 6 5.5675 -1.9535 -1.9570 13 1 6.3044 -1.3842 -1.3904 14 7 6.2319 -2.6467 -3.0635 15 6 7.4817 -3.1256 -2.9053 16 8 8.0577 -2.9827 -1.8440 17 6 8.1511 -3.8232 -4.0200 18 6 7.4627 -4.0923 -5.1935 19 6 8.0902 -4.7487 -6.2455 20 6 9.3903 -5.1449 -6.1559 21 6 10.1280 -4.8930 -4.9844 22 7 11.4046 -5.2758 -4.8802 23 6 12.0991 -5.0448 -3.7930 24 6 11.5439 -4.3918 -2.6943 25 6 10.2429 -3.9749 -2.7362 26 6 9.5037 -4.2253 -3.9041 27 6 4.5068 -1.0018 -2.5149 28 1 3.7561 -1.5733 -3.0606 29 8 5.1254 -0.0622 -3.3962 30 6 3.8386 -0.2533 -1.3574 31 1 -0.4850 0.8400 0.0004 32 1 3.6775 -2.9704 0.7381 33 1 5.0006 -1.7760 0.7482 34 1 4.1464 -3.5333 -1.5986 35 1 5.6531 -3.6729 -0.6607 36 1 5.7723 -2.7609 -3.9100 37 1 6.4320 -3.7853 -5.2924 38 1 7.5365 -4.9492 -7.1507 39 1 9.8568 -5.6532 -6.9869 40 1 13.1282 -5.3692 -3.7474 41 1 12.1404 -4.2156 -1.8114 42 1 9.7958 -3.4669 -1.8946 43 1 4.5108 0.5734 -3.7878 44 1 3.0165 0.3519 -1.7397 45 1 4.5680 0.3903 -0.8658 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090471589.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:30 Heat of formation + Delta-G solvation = 8.166373 kcal Electronic energy + Delta-G solvation = -29436.458755 eV Core-core repulsion = 25419.900531 eV Total energy + Delta-G solvation = -4016.558224 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.30034 -39.82817 -38.28125 -37.15821 -35.59237 -34.73533 -33.52102 -32.37844 -30.90771 -30.81507 -29.83823 -29.09753 -25.57003 -24.69664 -23.73249 -23.45009 -22.95179 -21.68226 -20.68503 -19.83570 -18.50566 -17.87896 -17.15782 -17.04559 -16.89261 -16.33969 -16.19279 -15.26017 -15.15983 -15.03874 -14.50469 -14.40237 -14.33228 -14.11376 -13.84904 -13.45835 -13.40626 -13.07260 -12.92451 -12.52529 -12.44261 -12.38822 -12.22404 -11.96249 -11.64572 -11.46352 -11.08790 -10.96059 -10.71113 -10.56923 -10.44265 -10.33757 -9.90354 -9.73132 -9.59543 -9.37538 -9.09883 -9.03330 -8.75540 -8.53023 -7.13131 -6.06658 -3.45637 -0.11975 0.53534 1.52714 2.40993 3.01704 3.09618 3.19752 3.40666 3.43183 3.89381 3.98029 4.20663 4.37007 4.40722 4.42308 4.53099 4.62975 4.80259 4.83265 4.84951 5.05091 5.08234 5.18007 5.21445 5.35164 5.48698 5.52943 5.55946 5.67562 5.68495 5.72231 5.81268 5.93815 5.97056 6.08635 6.13229 6.18785 6.30794 6.34062 6.43007 6.48379 6.51107 6.61342 6.74401 7.45122 7.62262 7.72001 7.87983 8.14577 8.20984 8.79476 9.58014 9.93757 11.08833 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.023643 B = 0.002601 C = 0.002516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.020500 B =10762.269831 C =11127.556656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.024 3.976 3 Si 0.882 3.118 4 H -0.290 1.290 5 H -0.301 1.301 6 H -0.268 1.268 7 C -0.264 4.264 8 H 0.089 0.911 9 N -0.602 5.602 10 C 0.148 3.852 11 C -0.142 4.142 12 C 0.161 3.839 13 H 0.092 0.908 14 N -0.705 5.705 15 C 0.560 3.440 16 O -0.537 6.537 17 C -0.106 4.106 18 C -0.076 4.076 19 C -0.110 4.110 20 C -0.069 4.069 21 C 0.118 3.882 22 N -0.480 5.480 23 C 0.132 3.868 24 C -0.181 4.181 25 C -0.058 4.058 26 C -0.067 4.067 27 C 0.079 3.921 28 H 0.064 0.936 29 O -0.571 6.571 30 C 0.102 3.898 31 H 0.264 0.736 32 H 0.071 0.929 33 H 0.029 0.971 34 H 0.067 0.933 35 H 0.069 0.931 36 H 0.399 0.601 37 H 0.134 0.866 38 H 0.138 0.862 39 H 0.139 0.861 40 H 0.159 0.841 41 H 0.138 0.862 42 H 0.180 0.820 43 H 0.378 0.622 44 H 0.078 0.922 45 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.598 -8.961 -12.065 23.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.175 4.175 3 Si 0.712 3.288 4 H -0.218 1.218 5 H -0.229 1.229 6 H -0.193 1.193 7 C -0.392 4.392 8 H 0.107 0.893 9 N -0.327 5.327 10 C 0.022 3.978 11 C -0.182 4.182 12 C 0.058 3.942 13 H 0.110 0.890 14 N -0.354 5.354 15 C 0.348 3.652 16 O -0.416 6.416 17 C -0.110 4.110 18 C -0.095 4.095 19 C -0.130 4.130 20 C -0.088 4.088 21 C -0.003 4.003 22 N -0.188 5.188 23 C -0.040 4.040 24 C -0.201 4.201 25 C -0.083 4.083 26 C -0.070 4.070 27 C 0.018 3.982 28 H 0.082 0.918 29 O -0.376 6.376 30 C -0.025 4.025 31 H 0.074 0.926 32 H 0.090 0.910 33 H 0.047 0.953 34 H 0.086 0.914 35 H 0.088 0.912 36 H 0.234 0.766 37 H 0.151 0.849 38 H 0.155 0.845 39 H 0.156 0.844 40 H 0.176 0.824 41 H 0.156 0.844 42 H 0.197 0.803 43 H 0.225 0.775 44 H 0.096 0.904 45 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 19.635 -9.521 -11.888 24.850 hybrid contribution -0.749 1.695 0.058 1.854 sum 18.886 -7.826 -11.830 23.619 Atomic orbital electron populations 1.69816 1.05701 1.26693 1.52574 1.25324 0.95276 0.97629 0.99269 0.86972 0.80275 0.84579 0.76972 1.21779 1.22902 1.19267 1.18937 0.84098 0.94821 1.41344 0.89346 1.44326 1.08207 1.33526 1.46624 1.20965 0.92462 0.91425 0.92933 1.22441 0.99702 0.97873 0.98180 1.21032 0.93936 0.92164 0.87106 0.88986 1.45991 1.15185 1.57199 1.16990 1.18058 0.81424 0.78605 0.87123 1.90554 1.64152 1.58764 1.28150 1.19949 0.93904 1.01969 0.95182 1.21464 0.99948 0.96029 0.92021 1.20831 0.94817 0.98279 0.99076 1.20992 0.93648 0.97932 0.96240 1.18854 0.90874 0.96809 0.93782 1.68043 1.05995 1.19042 1.25749 1.23013 0.99651 0.93042 0.88332 1.22076 0.96646 1.00895 1.00483 1.22713 0.93404 0.93991 0.98224 1.18648 0.93569 0.99264 0.95526 1.22800 0.93352 0.90237 0.91793 0.91842 1.86442 1.39595 1.47687 1.63864 1.22031 0.97564 0.92779 0.90105 0.92615 0.91042 0.95279 0.91434 0.91219 0.76619 0.84873 0.84464 0.84351 0.82396 0.84375 0.80331 0.77502 0.90444 0.94403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.74 13.97 55.49 0.78 -25.96 16 2 C 0.02 0.68 5.25 -17.43 -0.09 0.58 16 3 Si 0.88 21.49 24.35 -169.99 -4.14 17.35 16 4 H -0.29 -6.69 6.73 56.52 0.38 -6.31 16 5 H -0.30 -7.55 7.11 56.52 0.40 -7.14 16 6 H -0.27 -6.49 6.40 56.52 0.36 -6.12 16 7 C -0.26 -7.02 10.04 -15.06 -0.15 -7.17 16 8 H 0.09 2.51 8.06 -52.48 -0.42 2.09 16 9 N -0.60 -13.51 2.76 -172.32 -0.48 -13.98 16 10 C 0.15 2.81 6.51 -3.72 -0.02 2.79 16 11 C -0.14 -2.28 5.65 -26.61 -0.15 -2.43 16 12 C 0.16 2.57 2.12 -67.89 -0.14 2.42 16 13 H 0.09 1.66 7.58 -51.93 -0.39 1.27 16 14 N -0.70 -9.38 4.87 -54.80 -0.27 -9.65 16 15 C 0.56 7.97 7.69 -12.46 -0.10 7.87 16 16 O -0.54 -8.94 13.07 5.28 0.07 -8.87 16 17 C -0.11 -1.30 5.90 -104.65 -0.62 -1.92 16 18 C -0.08 -0.70 9.52 -39.14 -0.37 -1.08 16 19 C -0.11 -0.88 9.92 -40.04 -0.40 -1.28 16 20 C -0.07 -0.66 9.96 -39.38 -0.39 -1.05 16 21 C 0.12 1.42 6.60 -84.88 -0.56 0.86 16 22 N -0.48 -5.65 10.34 -10.99 -0.11 -5.76 16 23 C 0.13 1.27 11.15 -17.46 -0.19 1.07 16 24 C -0.18 -1.78 10.03 -39.73 -0.40 -2.18 16 25 C -0.06 -0.72 9.29 -39.31 -0.37 -1.09 16 26 C -0.07 -0.86 5.76 -106.53 -0.61 -1.48 16 27 C 0.08 1.30 3.14 -26.61 -0.08 1.22 16 28 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 29 O -0.57 -8.50 13.16 -35.23 -0.46 -8.96 16 30 C 0.10 2.08 3.81 -3.71 -0.01 2.07 16 31 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 32 H 0.07 1.33 7.93 -51.92 -0.41 0.92 16 33 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 36 H 0.40 4.34 6.67 -40.82 -0.27 4.07 16 37 H 0.13 0.93 6.42 -52.49 -0.34 0.59 16 38 H 0.14 0.67 8.06 -52.49 -0.42 0.25 16 39 H 0.14 1.04 8.06 -52.49 -0.42 0.62 16 40 H 0.16 0.96 8.06 -52.49 -0.42 0.53 16 41 H 0.14 0.97 8.06 -52.49 -0.42 0.55 16 42 H 0.18 2.45 4.96 -52.51 -0.26 2.19 16 43 H 0.38 4.36 9.08 45.56 0.41 4.77 16 44 H 0.08 1.69 4.56 -51.93 -0.24 1.45 16 45 H 0.04 0.80 6.92 -51.93 -0.36 0.44 16 LS Contribution 360.40 15.07 5.43 5.43 Total: -1.00 -33.22 360.40 -8.71 -41.93 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: -4.86 Total: 9.26 kcal Atomic # 6 Polarization: 3.89 SS G_CDS: -4.67 Total: -0.78 kcal Atomic # 7 Polarization: -55.28 SS G_CDS: -0.08 Total: -55.36 kcal Atomic # 8 Polarization: -17.44 SS G_CDS: -0.39 Total: -17.83 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.14 Total: 17.35 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -33.22 -8.71 -41.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090471589.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.096 kcal (2) G-P(sol) polarization free energy of solvation -33.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.929 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds