Wall clock time and date at job start Sat Apr 11 2020 06:18:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86801 * 120.00113 * 2 1 4 4 H 1.48501 * 109.46783 * 274.89740 * 3 2 1 5 5 H 1.48506 * 109.47303 * 34.89115 * 3 2 1 6 6 H 1.48499 * 109.47272 * 154.89321 * 3 2 1 7 7 C 1.38811 * 120.00110 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99568 * 339.76525 * 7 2 1 9 9 N 1.36936 * 120.00089 * 159.76975 * 7 2 1 10 10 C 1.46921 * 120.62801 * 152.80317 * 9 7 2 11 11 C 1.53197 * 108.77575 * 126.36719 * 10 9 7 12 12 C 1.53040 * 109.31179 * 54.63271 * 11 10 9 13 13 H 1.08998 * 109.46526 * 58.63820 * 12 11 10 14 14 N 1.46495 * 109.46072 * 178.61774 * 12 11 10 15 15 C 1.34781 * 120.00009 * 275.02460 * 14 12 11 16 16 O 1.21567 * 119.99517 * 359.97438 * 15 14 12 17 17 C 1.47759 * 120.00407 * 179.97438 * 15 14 12 18 18 C 1.40600 * 120.26750 * 359.97438 * 17 15 14 19 19 N 1.30801 * 121.54207 * 180.02562 * 18 17 15 20 20 C 1.33822 * 121.71617 * 359.95284 * 19 18 17 21 21 C 1.40528 * 120.82935 * 179.97438 * 20 19 18 22 22 C 1.36139 * 119.81561 * 180.02562 * 21 20 19 23 23 C 1.39338 * 121.09005 * 0.02562 * 22 21 20 24 24 C 1.36134 * 120.83129 * 359.97438 * 23 22 21 25 25 C 1.40539 * 119.61941 * 359.97438 * 24 23 22 26 26 C 1.39010 * 120.27255 * 179.97438 * 17 15 14 27 27 C 1.53045 * 109.52866 * 298.62843 * 12 11 10 28 28 H 1.08997 * 109.50395 * 181.32296 * 27 12 11 29 29 O 1.42897 * 109.49769 * 301.42426 * 27 12 11 30 30 C 1.46926 * 120.62832 * 332.77774 * 9 7 2 31 31 H 0.97007 * 119.99904 * 0.02562 * 1 2 3 32 32 H 1.09000 * 109.59168 * 6.58212 * 10 9 7 33 33 H 1.08996 * 109.58683 * 246.15174 * 10 9 7 34 34 H 1.09000 * 109.49792 * 294.68519 * 11 10 9 35 35 H 1.08998 * 109.52247 * 174.59572 * 11 10 9 36 36 H 0.96998 * 120.00431 * 95.02698 * 14 12 11 37 37 H 1.08003 * 119.22920 * 0.02562 * 18 17 15 38 38 H 1.08000 * 120.09321 * 0.07072 * 21 20 19 39 39 H 1.08003 * 119.45265 * 180.28793 * 22 21 20 40 40 H 1.08006 * 119.58265 * 180.02562 * 23 22 21 41 41 H 1.08007 * 120.18855 * 180.02562 * 24 23 22 42 42 H 1.08000 * 121.01638 * 359.95840 * 26 17 15 43 43 H 0.96696 * 114.00731 * 179.97438 * 29 27 12 44 44 H 1.08999 * 109.58740 * 353.41760 * 30 9 7 45 45 H 1.08998 * 109.58670 * 113.84901 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.3942 2.1061 -1.3950 5 1 1.5032 2.6207 0.8009 6 1 3.5957 1.4125 0.5941 7 6 2.0103 -1.2021 0.0005 8 1 1.5202 -2.1084 0.3245 9 7 3.3163 -1.2389 -0.4095 10 6 4.2333 -2.2659 0.1034 11 6 4.8796 -2.9870 -1.0837 12 6 5.5402 -1.9571 -2.0029 13 1 6.2865 -1.3950 -1.4415 14 7 6.1877 -2.6459 -3.1219 15 6 7.4370 -3.1319 -2.9821 16 8 8.0266 -2.9982 -1.9274 17 6 8.0900 -3.8272 -4.1105 18 6 7.4131 -3.9854 -5.3327 19 7 7.9671 -4.5970 -6.3475 20 6 9.2045 -5.1015 -6.2748 21 6 9.7814 -5.7556 -7.3767 22 6 11.0416 -6.2615 -7.2797 23 6 11.7757 -6.1434 -6.1013 24 6 11.2513 -5.5168 -5.0125 25 6 9.9535 -4.9815 -5.0772 26 6 9.3786 -4.3302 -3.9726 27 6 4.4776 -0.9963 -2.5417 28 1 4.9448 -0.2774 -3.2148 29 8 3.4811 -1.7360 -3.2501 30 6 3.8270 -0.2524 -1.3712 31 1 -0.4850 0.8401 -0.0004 32 1 3.6777 -2.9828 0.7079 33 1 5.0068 -1.7950 0.7100 34 1 4.1157 -3.5322 -1.6379 35 1 5.6329 -3.6854 -0.7193 36 1 5.7174 -2.7522 -3.9636 37 1 6.4123 -3.5928 -5.4359 38 1 9.2270 -5.8559 -8.2980 39 1 11.4811 -6.7590 -8.1317 40 1 12.7736 -6.5535 -6.0514 41 1 11.8297 -5.4307 -4.1044 42 1 9.9218 -4.2221 -3.0455 43 1 2.7741 -1.1896 -3.6196 44 1 3.0033 0.3592 -1.7395 45 1 4.5674 0.3827 -0.8848 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090601439.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:26 Heat of formation + Delta-G solvation = 3.312996 kcal Electronic energy + Delta-G solvation = -29031.964445 eV Core-core repulsion = 25015.195763 eV Total energy + Delta-G solvation = -4016.768682 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.29609 -39.88165 -38.30769 -37.21893 -35.04163 -34.60543 -33.77947 -32.30436 -31.21813 -30.45522 -29.97002 -29.30611 -25.73547 -24.46569 -24.30728 -23.02255 -22.47816 -21.84549 -20.88577 -19.77590 -18.54935 -18.12489 -17.54967 -17.27617 -16.25612 -16.15501 -15.62836 -15.28348 -15.09635 -14.95649 -14.64502 -14.41111 -14.33461 -14.19095 -14.00260 -13.79011 -13.44118 -13.33687 -12.74831 -12.46267 -12.42434 -12.19409 -12.16233 -11.90058 -11.74514 -11.51974 -11.03605 -10.87406 -10.76196 -10.48171 -10.36392 -10.31563 -10.06283 -9.70938 -9.53305 -9.42522 -9.23402 -8.89281 -8.67330 -8.66686 -7.00897 -5.97825 -3.32994 -0.13076 0.24364 1.49829 2.24610 3.03171 3.07487 3.22868 3.44297 3.45582 3.75575 3.82070 4.17226 4.33629 4.41324 4.43351 4.46349 4.56981 4.64009 4.71807 4.82942 4.92338 5.01265 5.10701 5.28534 5.31411 5.35948 5.48504 5.50226 5.60334 5.63985 5.69973 5.88535 5.93928 5.97939 6.02215 6.08067 6.21186 6.25542 6.35906 6.37065 6.42535 6.60995 6.65892 6.93853 7.46037 7.51131 7.88843 8.07302 8.14845 8.30168 8.89425 9.67503 10.04384 11.18131 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.030738 B = 0.002276 C = 0.002217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.702125 B =12301.715085 C =12624.792047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.020 3.980 3 Si 0.879 3.121 4 H -0.292 1.292 5 H -0.302 1.302 6 H -0.269 1.269 7 C -0.251 4.251 8 H 0.086 0.914 9 N -0.596 5.596 10 C 0.151 3.849 11 C -0.139 4.139 12 C 0.162 3.838 13 H 0.094 0.906 14 N -0.710 5.710 15 C 0.560 3.440 16 O -0.537 6.537 17 C -0.189 4.189 18 C 0.164 3.836 19 N -0.475 5.475 20 C 0.140 3.860 21 C -0.098 4.098 22 C -0.093 4.093 23 C -0.122 4.122 24 C -0.085 4.085 25 C -0.113 4.113 26 C 0.011 3.989 27 C 0.081 3.919 28 H 0.049 0.951 29 O -0.554 6.554 30 C 0.099 3.901 31 H 0.262 0.738 32 H 0.068 0.932 33 H 0.025 0.975 34 H 0.075 0.925 35 H 0.058 0.942 36 H 0.403 0.597 37 H 0.164 0.836 38 H 0.138 0.862 39 H 0.132 0.868 40 H 0.130 0.870 41 H 0.134 0.866 42 H 0.154 0.846 43 H 0.380 0.620 44 H 0.080 0.920 45 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.065 -9.875 -14.720 28.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.179 4.179 3 Si 0.710 3.290 4 H -0.220 1.220 5 H -0.231 1.231 6 H -0.194 1.194 7 C -0.379 4.379 8 H 0.104 0.896 9 N -0.319 5.319 10 C 0.025 3.975 11 C -0.179 4.179 12 C 0.058 3.942 13 H 0.112 0.888 14 N -0.361 5.361 15 C 0.346 3.654 16 O -0.416 6.416 17 C -0.194 4.194 18 C -0.010 4.010 19 N -0.183 5.183 20 C 0.019 3.981 21 C -0.117 4.117 22 C -0.113 4.113 23 C -0.140 4.140 24 C -0.104 4.104 25 C -0.116 4.116 26 C -0.016 4.016 27 C 0.020 3.980 28 H 0.067 0.933 29 O -0.359 6.359 30 C -0.029 4.029 31 H 0.072 0.928 32 H 0.086 0.914 33 H 0.043 0.957 34 H 0.094 0.906 35 H 0.077 0.923 36 H 0.239 0.761 37 H 0.181 0.819 38 H 0.156 0.844 39 H 0.149 0.851 40 H 0.148 0.852 41 H 0.152 0.848 42 H 0.172 0.828 43 H 0.227 0.773 44 H 0.098 0.902 45 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 22.288 -10.330 -14.587 28.570 hybrid contribution 0.194 1.608 0.186 1.631 sum 22.481 -8.722 -14.401 28.087 Atomic orbital electron populations 1.69837 1.05634 1.26427 1.53198 1.25280 0.95244 0.97392 0.99935 0.87013 0.80267 0.84953 0.76798 1.21967 1.23053 1.19441 1.18920 0.84662 0.94706 1.39623 0.89598 1.44207 1.08624 1.32522 1.46514 1.20917 0.92305 0.91252 0.93024 1.22323 0.99726 0.97890 0.97957 1.21035 0.92792 0.93483 0.86864 0.88798 1.46087 1.14920 1.57738 1.17332 1.17979 0.81635 0.78774 0.87001 1.90786 1.64459 1.58117 1.28197 1.21041 0.96874 1.05030 0.96495 1.23116 0.99119 0.91703 0.87096 1.67975 1.10203 1.09849 1.30243 1.19041 0.90151 0.95925 0.92939 1.20853 0.95418 0.97604 0.97789 1.21002 0.94061 0.98076 0.98112 1.20960 1.00466 0.99442 0.93084 1.21092 0.93480 0.96486 0.99337 1.18848 0.96344 1.01653 0.94706 1.21985 0.92851 0.88971 0.97746 1.22574 0.88781 0.92610 0.94085 0.93283 1.86375 1.38151 1.38141 1.73249 1.22055 0.97929 0.92556 0.90310 0.92800 0.91399 0.95698 0.90609 0.92344 0.76149 0.81928 0.84433 0.85058 0.85225 0.84802 0.82845 0.77284 0.90239 0.94715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.19 13.97 55.49 0.78 -26.41 16 2 C 0.02 0.56 5.24 -17.43 -0.09 0.47 16 3 Si 0.88 21.57 24.35 -169.99 -4.14 17.43 16 4 H -0.29 -6.79 6.70 56.52 0.38 -6.41 16 5 H -0.30 -7.66 7.11 56.52 0.40 -7.26 16 6 H -0.27 -6.52 6.46 56.52 0.36 -6.15 16 7 C -0.25 -6.81 10.04 -15.06 -0.15 -6.96 16 8 H 0.09 2.53 8.05 -52.49 -0.42 2.11 16 9 N -0.60 -13.66 2.71 -172.32 -0.47 -14.13 16 10 C 0.15 3.01 6.52 -3.71 -0.02 2.99 16 11 C -0.14 -2.42 5.51 -26.61 -0.15 -2.56 16 12 C 0.16 2.59 2.20 -67.89 -0.15 2.44 16 13 H 0.09 1.59 7.58 -51.93 -0.39 1.19 16 14 N -0.71 -9.51 5.00 -54.74 -0.27 -9.79 16 15 C 0.56 7.82 7.74 -12.37 -0.10 7.73 16 16 O -0.54 -9.14 16.04 5.31 0.09 -9.05 16 17 C -0.19 -2.22 5.89 -104.83 -0.62 -2.84 16 18 C 0.16 1.77 10.68 -17.10 -0.18 1.59 16 19 N -0.48 -5.55 10.30 -10.67 -0.11 -5.66 16 20 C 0.14 1.51 6.61 -84.79 -0.56 0.95 16 21 C -0.10 -0.82 9.97 -39.47 -0.39 -1.22 16 22 C -0.09 -0.58 9.94 -39.93 -0.40 -0.98 16 23 C -0.12 -0.74 9.96 -39.93 -0.40 -1.14 16 24 C -0.09 -0.64 9.77 -39.47 -0.39 -1.02 16 25 C -0.11 -1.14 5.74 -106.82 -0.61 -1.75 16 26 C 0.01 0.12 9.46 -38.43 -0.36 -0.24 16 27 C 0.08 1.32 3.38 -26.60 -0.09 1.23 16 28 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 29 O -0.55 -9.01 12.08 -35.23 -0.43 -9.43 16 30 C 0.10 2.01 3.83 -3.71 -0.01 1.99 16 31 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 32 H 0.07 1.35 7.93 -51.93 -0.41 0.94 16 33 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 34 H 0.08 1.42 7.61 -51.93 -0.40 1.02 16 35 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.40 4.61 6.28 -40.82 -0.26 4.35 16 37 H 0.16 1.41 6.37 -52.48 -0.33 1.07 16 38 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 39 H 0.13 0.47 8.06 -52.48 -0.42 0.05 16 40 H 0.13 0.46 8.06 -52.48 -0.42 0.03 16 41 H 0.13 0.71 8.06 -52.48 -0.42 0.29 16 42 H 0.15 1.50 7.70 -52.49 -0.40 1.09 16 43 H 0.38 5.40 9.08 45.56 0.41 5.81 16 44 H 0.08 1.74 4.50 -51.93 -0.23 1.50 16 45 H 0.04 0.71 6.98 -51.93 -0.36 0.35 16 LS Contribution 364.27 15.07 5.49 5.49 Total: -1.00 -33.61 364.27 -8.69 -42.31 By element: Atomic # 1 Polarization: 13.53 SS G_CDS: -4.95 Total: 8.58 kcal Atomic # 6 Polarization: 5.34 SS G_CDS: -4.67 Total: 0.67 kcal Atomic # 7 Polarization: -55.91 SS G_CDS: -0.08 Total: -55.99 kcal Atomic # 8 Polarization: -18.15 SS G_CDS: -0.34 Total: -18.49 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.14 Total: 17.43 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -33.61 -8.69 -42.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090601439.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.618 kcal (2) G-P(sol) polarization free energy of solvation -33.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.305 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds