Wall clock time and date at job start Sat Apr 11 2020 06:18:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86804 * 119.99627 * 2 1 4 4 H 1.48496 * 109.46997 * 274.06625 * 3 2 1 5 5 H 1.48503 * 109.47242 * 34.06675 * 3 2 1 6 6 H 1.48496 * 109.46930 * 154.06570 * 3 2 1 7 7 C 1.38806 * 120.00123 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00088 * 197.50055 * 7 2 1 9 9 N 1.36936 * 120.00019 * 17.50252 * 7 2 1 10 10 C 1.46924 * 120.63331 * 27.98416 * 9 7 2 11 11 C 1.53191 * 108.76827 * 126.35496 * 10 9 7 12 12 C 1.53047 * 109.30772 * 54.65713 * 11 10 9 13 13 H 1.09008 * 109.45521 * 58.62958 * 12 11 10 14 14 N 1.46498 * 109.46087 * 178.59677 * 12 11 10 15 15 C 1.34776 * 120.00179 * 275.03421 * 14 12 11 16 16 O 1.21551 * 120.00420 * 359.97438 * 15 14 12 17 17 C 1.47887 * 120.00119 * 180.27230 * 15 14 12 18 18 C 1.40579 * 119.70397 * 359.44747 * 17 15 14 19 19 C 1.35812 * 120.73213 * 179.73008 * 18 17 15 20 20 C 1.40540 * 119.98300 * 0.56312 * 19 18 17 21 21 C 1.40822 * 121.12635 * 179.72182 * 20 19 18 22 22 C 1.36555 * 118.19636 * 179.97438 * 21 20 19 23 23 C 1.39423 * 119.93704 * 0.02562 * 22 21 20 24 24 N 1.31014 * 121.71889 * 359.94591 * 23 22 21 25 25 C 1.33748 * 121.34845 * 0.10220 * 24 23 22 26 26 C 1.38404 * 119.70898 * 179.72177 * 17 15 14 27 27 C 1.53039 * 109.52989 * 298.61236 * 12 11 10 28 28 H 1.08999 * 109.49497 * 301.42463 * 27 12 11 29 29 O 1.42893 * 109.49656 * 181.32404 * 27 12 11 30 30 C 1.46928 * 120.62775 * 207.95620 * 9 7 2 31 31 H 0.97003 * 120.00224 * 0.02562 * 1 2 3 32 32 H 1.08996 * 109.58611 * 246.15890 * 10 9 7 33 33 H 1.09007 * 109.58408 * 6.57977 * 10 9 7 34 34 H 1.08997 * 109.51373 * 294.70364 * 11 10 9 35 35 H 1.09003 * 109.48534 * 174.59812 * 11 10 9 36 36 H 0.97003 * 119.99719 * 95.02507 * 14 12 11 37 37 H 1.07997 * 119.62895 * 0.02562 * 18 17 15 38 38 H 1.07997 * 120.00387 * 180.25968 * 19 18 17 39 39 H 1.07999 * 120.90423 * 359.95209 * 21 20 19 40 40 H 1.08004 * 120.02898 * 179.97438 * 22 21 20 41 41 H 1.08004 * 119.13720 * 180.02562 * 23 22 21 42 42 H 1.08006 * 120.23160 * 359.95503 * 26 17 15 43 43 H 0.96706 * 113.99964 * 180.02562 * 29 27 12 44 44 H 1.09001 * 109.58317 * 113.84885 * 30 9 7 45 45 H 1.08996 * 109.70625 * 353.49061 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4116 2.0961 -1.3965 5 1 1.4931 2.6264 0.7843 6 1 3.5880 1.4170 0.6123 7 6 2.0102 -1.2021 0.0005 8 1 3.0528 -1.2236 0.2818 9 7 1.3731 -2.3607 -0.3556 10 6 0.2349 -2.3342 -1.2842 11 6 0.5149 -3.3056 -2.4351 12 6 0.8274 -4.6906 -1.8636 13 1 -0.0162 -5.0353 -1.2656 14 7 1.0630 -5.6302 -2.9626 15 6 0.0225 -6.2503 -3.5537 16 8 -1.1113 -6.0303 -3.1749 17 6 0.2608 -7.2035 -4.6591 18 6 1.5741 -7.4493 -5.0960 19 6 1.8173 -8.3245 -6.1057 20 6 0.7486 -8.9870 -6.7336 21 6 0.9726 -9.8948 -7.7865 22 6 -0.1094 -10.5053 -8.3534 23 6 -1.3921 -10.2218 -7.8863 24 7 -1.5972 -9.3771 -6.9061 25 6 -0.5814 -8.7448 -6.3084 26 6 -0.8117 -7.8412 -5.2580 27 6 2.0773 -4.6110 -0.9841 28 1 2.9154 -4.2424 -1.5756 29 8 2.3862 -5.9102 -0.4758 30 6 1.8153 -3.6541 0.1832 31 1 -0.4850 0.8401 -0.0004 32 1 -0.6711 -2.6391 -0.7605 33 1 0.1092 -1.3261 -1.6794 34 1 1.3680 -2.9495 -3.0127 35 1 -0.3616 -3.3675 -3.0802 36 1 1.9678 -5.8060 -3.2648 37 1 2.3992 -6.9401 -4.6204 38 1 2.8312 -8.5077 -6.4292 39 1 1.9730 -10.1023 -8.1366 40 1 0.0284 -11.2064 -9.1632 41 1 -2.2386 -10.7123 -8.3437 42 1 -1.8187 -7.6452 -4.9202 43 1 3.1688 -5.9347 0.0918 44 1 1.0381 -4.0668 0.8265 45 1 2.7316 -3.5191 0.7577 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090654121.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:47 Heat of formation + Delta-G solvation = -3.856202 kcal Electronic energy + Delta-G solvation = -28803.597683 eV Core-core repulsion = 24786.518121 eV Total energy + Delta-G solvation = -4017.079562 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 2.46 seconds Orbital eigenvalues (eV) -41.18713 -39.82439 -38.12557 -36.86714 -35.42842 -34.43105 -33.79524 -32.12161 -31.07422 -30.31427 -29.83797 -28.55082 -25.74429 -24.53916 -24.17622 -22.60581 -22.34447 -21.84525 -20.76273 -19.66955 -18.49287 -17.81758 -17.22457 -17.08345 -16.56175 -16.21912 -15.82465 -14.99710 -14.86457 -14.79690 -14.42533 -14.36731 -14.21856 -13.92048 -13.83405 -13.64184 -13.39281 -13.21537 -12.79005 -12.32954 -12.18555 -12.14147 -11.88640 -11.86795 -11.58236 -11.13045 -10.90858 -10.88501 -10.69545 -10.35479 -10.26872 -9.99792 -9.91733 -9.83536 -9.74984 -9.47545 -9.15025 -8.79480 -8.60132 -8.46522 -6.79197 -5.86337 -3.30827 -0.03747 0.32683 1.58610 2.26198 3.19842 3.26112 3.33832 3.40432 3.42224 3.85298 3.96333 4.20535 4.33300 4.36391 4.48931 4.49701 4.57857 4.66609 4.82512 4.88365 5.13195 5.26889 5.30442 5.43048 5.45776 5.51908 5.53561 5.57418 5.71544 5.74971 5.93611 5.95350 6.00706 6.09110 6.15927 6.28106 6.41944 6.45981 6.50271 6.65297 6.75508 6.82702 7.27151 7.55652 7.58629 7.67099 7.71664 7.89101 8.34983 8.36290 9.11444 9.73849 10.29792 11.22220 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.023680 B = 0.002202 C = 0.002157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.127722 B =12713.316091 C =12978.876904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.005 3.995 3 Si 0.904 3.096 4 H -0.287 1.287 5 H -0.291 1.291 6 H -0.278 1.278 7 C -0.260 4.260 8 H 0.067 0.933 9 N -0.588 5.588 10 C 0.171 3.829 11 C -0.147 4.147 12 C 0.162 3.838 13 H 0.090 0.910 14 N -0.708 5.708 15 C 0.554 3.446 16 O -0.532 6.532 17 C -0.110 4.110 18 C -0.087 4.087 19 C -0.102 4.102 20 C -0.089 4.089 21 C -0.061 4.061 22 C -0.171 4.171 23 C 0.128 3.872 24 N -0.465 5.465 25 C 0.117 3.883 26 C -0.025 4.025 27 C 0.080 3.920 28 H 0.056 0.944 29 O -0.571 6.571 30 C 0.121 3.879 31 H 0.256 0.744 32 H 0.025 0.975 33 H 0.093 0.907 34 H 0.058 0.942 35 H 0.063 0.937 36 H 0.395 0.605 37 H 0.133 0.867 38 H 0.136 0.864 39 H 0.140 0.860 40 H 0.139 0.861 41 H 0.161 0.839 42 H 0.152 0.848 43 H 0.374 0.626 44 H 0.029 0.971 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.618 -20.474 -15.796 26.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.194 4.194 3 Si 0.734 3.266 4 H -0.214 1.214 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.389 4.389 8 H 0.085 0.915 9 N -0.312 5.312 10 C 0.045 3.955 11 C -0.187 4.187 12 C 0.059 3.941 13 H 0.108 0.892 14 N -0.358 5.358 15 C 0.340 3.660 16 O -0.410 6.410 17 C -0.115 4.115 18 C -0.106 4.106 19 C -0.121 4.121 20 C -0.091 4.091 21 C -0.087 4.087 22 C -0.190 4.190 23 C -0.046 4.046 24 N -0.173 5.173 25 C -0.003 4.003 26 C -0.045 4.045 27 C 0.019 3.981 28 H 0.074 0.926 29 O -0.375 6.375 30 C -0.007 4.007 31 H 0.066 0.934 32 H 0.043 0.957 33 H 0.111 0.889 34 H 0.077 0.923 35 H 0.082 0.918 36 H 0.230 0.770 37 H 0.150 0.850 38 H 0.154 0.846 39 H 0.158 0.842 40 H 0.156 0.844 41 H 0.178 0.822 42 H 0.169 0.831 43 H 0.220 0.780 44 H 0.047 0.953 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.338 -20.046 -15.428 25.515 hybrid contribution 2.270 0.726 -0.194 2.391 sum 5.608 -19.320 -15.622 25.471 Atomic orbital electron populations 1.70041 1.05291 1.25768 1.53030 1.25084 0.95304 0.98568 1.00469 0.86250 0.79113 0.83564 0.77657 1.21371 1.21690 1.20361 1.19165 0.92746 0.84650 1.42383 0.91504 1.44048 1.36401 1.01067 1.49678 1.20834 0.88821 0.98352 0.87505 1.22617 1.01133 0.94176 1.00805 1.21064 0.97754 0.89209 0.86095 0.89202 1.46008 1.08978 1.44615 1.36186 1.18129 0.85281 0.80426 0.82199 1.90801 1.22100 1.64122 1.63950 1.20042 0.93777 0.99459 0.98182 1.21012 0.95842 0.97315 0.96409 1.20856 0.98317 0.96613 0.96322 1.18959 0.94401 0.98334 0.97433 1.21515 1.00004 0.93626 0.93558 1.21966 0.93770 1.01557 1.01751 1.23025 0.96652 0.93052 0.91842 1.68043 1.34032 1.06981 1.08215 1.18778 0.88461 0.96834 0.96276 1.21273 1.00245 0.91470 0.91519 1.22783 0.95963 0.83174 0.96211 0.92565 1.86487 1.51136 1.30242 1.69662 1.21520 0.98851 0.87405 0.92892 0.93409 0.95699 0.88877 0.92287 0.91810 0.76990 0.84968 0.84638 0.84185 0.84354 0.82185 0.83070 0.77967 0.95270 0.92124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.74 11.22 55.49 0.62 -25.12 16 2 C 0.01 0.14 4.90 -17.43 -0.09 0.06 16 3 Si 0.90 21.19 29.59 -169.99 -5.03 16.16 16 4 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 7 C -0.26 -6.89 9.58 -15.06 -0.14 -7.03 16 8 H 0.07 1.72 7.89 -52.48 -0.41 1.31 16 9 N -0.59 -14.26 2.99 -172.32 -0.52 -14.77 16 10 C 0.17 4.07 5.31 -3.71 -0.02 4.05 16 11 C -0.15 -2.88 5.65 -26.61 -0.15 -3.03 16 12 C 0.16 2.91 2.12 -67.89 -0.14 2.77 16 13 H 0.09 1.86 7.58 -51.92 -0.39 1.47 16 14 N -0.71 -10.61 4.87 -54.69 -0.27 -10.87 16 15 C 0.55 8.96 7.73 -12.31 -0.10 8.87 16 16 O -0.53 -10.67 15.96 5.32 0.08 -10.58 16 17 C -0.11 -1.44 5.87 -105.00 -0.62 -2.06 16 18 C -0.09 -0.87 9.44 -39.57 -0.37 -1.24 16 19 C -0.10 -0.87 9.73 -39.58 -0.39 -1.26 16 20 C -0.09 -0.88 5.75 -106.73 -0.61 -1.49 16 21 C -0.06 -0.43 9.88 -39.21 -0.39 -0.82 16 22 C -0.17 -1.07 10.03 -39.75 -0.40 -1.47 16 23 C 0.13 1.04 11.15 -17.46 -0.19 0.85 16 24 N -0.47 -5.51 10.34 -10.98 -0.11 -5.62 16 25 C 0.12 1.44 6.60 -84.87 -0.56 0.88 16 26 C -0.03 -0.34 9.56 -38.69 -0.37 -0.71 16 27 C 0.08 1.33 3.14 -26.61 -0.08 1.24 16 28 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 29 O -0.57 -8.32 13.16 -35.23 -0.46 -8.78 16 30 C 0.12 2.43 6.14 -3.71 -0.02 2.40 16 31 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 32 H 0.02 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.09 2.46 6.06 -51.93 -0.31 2.15 16 34 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 36 H 0.40 4.75 6.58 -40.82 -0.27 4.48 16 37 H 0.13 1.02 6.34 -52.49 -0.33 0.69 16 38 H 0.14 0.72 8.06 -52.49 -0.42 0.30 16 39 H 0.14 0.56 8.06 -52.49 -0.42 0.13 16 40 H 0.14 0.42 8.06 -52.48 -0.42 0.00 16 41 H 0.16 0.79 8.06 -52.48 -0.42 0.37 16 42 H 0.15 2.18 7.60 -52.48 -0.40 1.78 16 43 H 0.37 3.84 9.08 45.56 0.41 4.26 16 44 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.06 1.14 7.94 -51.93 -0.41 0.72 16 LS Contribution 372.37 15.07 5.61 5.61 Total: -1.00 -34.12 372.37 -9.78 -43.89 By element: Atomic # 1 Polarization: 13.14 SS G_CDS: -5.06 Total: 8.08 kcal Atomic # 6 Polarization: 6.66 SS G_CDS: -4.64 Total: 2.01 kcal Atomic # 7 Polarization: -56.12 SS G_CDS: -0.27 Total: -56.39 kcal Atomic # 8 Polarization: -18.98 SS G_CDS: -0.38 Total: -19.36 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.03 Total: 16.16 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -34.12 -9.78 -43.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090654121.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.039 kcal (2) G-P(sol) polarization free energy of solvation -34.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.46 seconds