Wall clock time and date at job start Sat Apr 11 2020 06:19:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86791 * 120.00402 * 2 1 4 4 H 1.48506 * 109.47397 * 270.00047 * 3 2 1 5 5 H 1.48497 * 109.47016 * 30.00141 * 3 2 1 6 6 H 1.48496 * 109.47229 * 149.99926 * 3 2 1 7 7 C 1.38810 * 119.99248 * 180.02562 * 2 1 3 8 8 H 1.08010 * 119.99862 * 162.88790 * 7 2 1 9 9 N 1.36935 * 120.00425 * 343.15714 * 7 2 1 10 10 C 1.46924 * 120.63266 * 152.18100 * 9 7 2 11 11 C 1.53188 * 108.77660 * 126.36881 * 10 9 7 12 12 C 1.53044 * 109.31144 * 54.63990 * 11 10 9 13 13 H 1.09006 * 109.45887 * 58.63684 * 12 11 10 14 14 N 1.46500 * 109.45960 * 178.61208 * 12 11 10 15 15 C 1.34770 * 120.00084 * 274.99582 * 14 12 11 16 16 O 1.21547 * 119.99999 * 0.02562 * 15 14 12 17 17 C 1.47880 * 120.00135 * 180.02562 * 15 14 12 18 18 C 1.40580 * 119.70590 * 0.02562 * 17 15 14 19 19 C 1.35809 * 120.73318 * 179.97438 * 18 17 15 20 20 C 1.40550 * 119.98732 * 359.97438 * 19 18 17 21 21 C 1.40820 * 121.13460 * 179.97438 * 20 19 18 22 22 C 1.36550 * 118.19599 * 180.02562 * 21 20 19 23 23 C 1.39417 * 119.94212 * 359.95427 * 22 21 20 24 24 N 1.31020 * 121.70929 * 0.02804 * 23 22 21 25 25 C 1.33742 * 121.35213 * 359.97438 * 24 23 22 26 26 C 1.38407 * 119.70999 * 179.72814 * 17 15 14 27 27 C 1.53037 * 109.53246 * 298.63211 * 12 11 10 28 28 H 1.09002 * 109.49374 * 181.31416 * 27 12 11 29 29 O 1.42892 * 109.50020 * 301.41142 * 27 12 11 30 30 C 1.46927 * 120.63011 * 331.90457 * 9 7 2 31 31 H 0.97005 * 119.99823 * 0.02562 * 1 2 3 32 32 H 1.09007 * 109.59003 * 246.16420 * 10 9 7 33 33 H 1.09006 * 109.58783 * 6.44064 * 10 9 7 34 34 H 1.09003 * 109.49774 * 174.58628 * 11 10 9 35 35 H 1.08989 * 109.50150 * 294.65191 * 11 10 9 36 36 H 0.97001 * 119.99354 * 95.00051 * 14 12 11 37 37 H 1.08002 * 119.62988 * 359.97438 * 18 17 15 38 38 H 1.08005 * 120.00589 * 180.02562 * 19 18 17 39 39 H 1.08000 * 120.90175 * 0.02562 * 21 20 19 40 40 H 1.08008 * 120.02904 * 179.97438 * 22 21 20 41 41 H 1.08002 * 119.14333 * 180.02562 * 23 22 21 42 42 H 1.08005 * 120.23121 * 359.97438 * 26 17 15 43 43 H 0.96707 * 114.00152 * 179.97438 * 29 27 12 44 44 H 1.08997 * 109.58334 * 353.41526 * 30 9 7 45 45 H 1.09008 * 109.58397 * 113.84187 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4478 2.6525 0.7001 6 1 3.5478 1.4400 0.7000 7 6 2.0101 -1.2022 -0.0005 8 1 3.0543 -1.2229 -0.2758 9 7 1.3694 -2.3628 0.3425 10 6 1.8186 -3.6535 -0.1969 11 6 2.0670 -4.6156 0.9690 12 6 0.8066 -4.6999 1.8330 13 1 -0.0295 -5.0423 1.2232 14 7 1.0294 -5.6446 2.9304 15 6 0.8282 -6.9629 2.7360 16 8 0.4622 -7.3682 1.6501 17 6 1.0525 -7.9164 3.8438 18 6 1.4752 -7.4409 5.0974 19 6 1.6871 -8.2979 6.1294 20 6 1.4832 -9.6770 5.9505 21 6 1.6960 -10.5872 7.0036 22 6 1.4802 -11.9139 6.7633 23 6 1.0597 -12.3332 5.5019 24 7 0.8622 -11.4837 4.5242 25 6 1.0554 -10.1711 4.6932 26 6 0.8385 -9.2684 3.6392 27 6 0.4863 -3.3179 2.4070 28 1 -0.3979 -3.3834 3.0410 29 8 1.5949 -2.8539 3.1801 30 6 0.2234 -2.3417 1.2618 31 1 -0.4850 0.8401 -0.0004 32 1 1.0495 -4.0636 -0.8516 33 1 2.7411 -3.5130 -0.7603 34 1 2.3079 -5.6048 0.5795 35 1 2.8981 -4.2498 1.5718 36 1 1.3218 -5.3211 3.7969 37 1 1.6332 -6.3822 5.2413 38 1 2.0114 -7.9197 7.0877 39 1 2.0211 -10.2452 7.9751 40 1 1.6348 -12.6379 7.5498 41 1 0.8925 -13.3857 5.3261 42 1 0.5087 -9.6270 2.6752 43 1 1.4614 -1.9812 3.5748 44 1 0.0952 -1.3363 1.6627 45 1 -0.6784 -2.6426 0.7285 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090654127.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:04 Heat of formation + Delta-G solvation = -2.354859 kcal Electronic energy + Delta-G solvation = -28924.685045 eV Core-core repulsion = 24907.670586 eV Total energy + Delta-G solvation = -4017.014459 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.20962 -39.85118 -38.12522 -36.89322 -34.81606 -34.43041 -33.81452 -32.24126 -31.05296 -30.33276 -29.32306 -29.06664 -25.74283 -24.52005 -24.19264 -22.61974 -22.32012 -21.82295 -20.73137 -19.57154 -18.47847 -17.82378 -17.28141 -17.15363 -16.28607 -15.99391 -15.47387 -15.07710 -14.93169 -14.81176 -14.47018 -14.36319 -14.14781 -13.87748 -13.81019 -13.74216 -13.41810 -13.25196 -12.80980 -12.22190 -12.15982 -12.03179 -11.94993 -11.84942 -11.28362 -11.16514 -10.91371 -10.79874 -10.61436 -10.49007 -10.22453 -10.07370 -9.91783 -9.84445 -9.65007 -9.22347 -9.16664 -8.75577 -8.60785 -8.50724 -6.69377 -5.82978 -3.23423 -0.06080 0.30686 1.56346 2.23549 3.17930 3.22345 3.35040 3.42421 3.45220 3.82555 3.94838 4.19051 4.33324 4.46693 4.47836 4.55999 4.63457 4.77060 4.81614 4.89321 5.11272 5.28409 5.37540 5.41106 5.43708 5.52162 5.55112 5.56774 5.70085 5.92602 5.93443 5.99024 6.03151 6.13987 6.19866 6.24928 6.39996 6.45574 6.54474 6.78674 6.82296 6.97041 7.15592 7.41096 7.53503 7.67042 7.76868 8.20433 8.31570 8.41347 9.16589 9.79724 10.36586 11.26049 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.032218 B = 0.002162 C = 0.002092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.877812 B =12945.359440 C =13383.537428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C -0.002 4.002 3 Si 0.903 3.097 4 H -0.287 1.287 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.242 4.242 8 H 0.065 0.935 9 N -0.583 5.583 10 C 0.148 3.852 11 C -0.136 4.136 12 C 0.162 3.838 13 H 0.092 0.908 14 N -0.710 5.710 15 C 0.551 3.449 16 O -0.535 6.535 17 C -0.111 4.111 18 C -0.088 4.088 19 C -0.102 4.102 20 C -0.089 4.089 21 C -0.061 4.061 22 C -0.170 4.170 23 C 0.128 3.872 24 N -0.466 5.466 25 C 0.117 3.883 26 C -0.025 4.025 27 C 0.073 3.927 28 H 0.044 0.956 29 O -0.561 6.561 30 C 0.145 3.855 31 H 0.253 0.747 32 H 0.020 0.980 33 H 0.058 0.942 34 H 0.053 0.947 35 H 0.070 0.930 36 H 0.401 0.599 37 H 0.134 0.866 38 H 0.136 0.864 39 H 0.141 0.859 40 H 0.139 0.861 41 H 0.161 0.839 42 H 0.151 0.849 43 H 0.375 0.625 44 H 0.096 0.904 45 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.033 -19.545 17.686 26.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.200 4.200 3 Si 0.733 3.267 4 H -0.214 1.214 5 H -0.217 1.217 6 H -0.205 1.205 7 C -0.371 4.371 8 H 0.083 0.917 9 N -0.305 5.305 10 C 0.021 3.979 11 C -0.177 4.177 12 C 0.059 3.941 13 H 0.110 0.890 14 N -0.361 5.361 15 C 0.337 3.663 16 O -0.413 6.413 17 C -0.116 4.116 18 C -0.107 4.107 19 C -0.120 4.120 20 C -0.091 4.091 21 C -0.087 4.087 22 C -0.190 4.190 23 C -0.046 4.046 24 N -0.173 5.173 25 C -0.004 4.004 26 C -0.045 4.045 27 C 0.012 3.988 28 H 0.062 0.938 29 O -0.366 6.366 30 C 0.018 3.982 31 H 0.063 0.937 32 H 0.038 0.962 33 H 0.076 0.924 34 H 0.072 0.928 35 H 0.088 0.912 36 H 0.237 0.763 37 H 0.152 0.848 38 H 0.154 0.846 39 H 0.158 0.842 40 H 0.157 0.843 41 H 0.178 0.822 42 H 0.169 0.831 43 H 0.222 0.778 44 H 0.114 0.886 45 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 1.630 -20.405 15.798 25.857 hybrid contribution 0.559 1.837 1.509 2.442 sum 2.189 -18.568 17.307 25.477 Atomic orbital electron populations 1.70020 1.05205 1.25486 1.54543 1.25026 0.95302 0.98389 1.01260 0.86289 0.79123 0.83566 0.77768 1.21447 1.21655 1.20503 1.19167 0.92580 0.84628 1.40769 0.91692 1.43865 1.35197 1.01712 1.49716 1.20898 0.97956 0.86382 0.92667 1.22305 0.97427 0.99415 0.98521 1.21068 0.99468 0.86257 0.87355 0.88958 1.46140 1.67978 1.05911 1.16041 1.18192 0.77987 0.82601 0.87480 1.90789 1.46615 1.78236 1.25669 1.20044 1.03050 0.93988 0.94534 1.21046 0.97233 1.00517 0.91855 1.20872 1.00215 0.91352 0.99610 1.18964 1.00539 0.95028 0.94565 1.21520 0.95728 0.93024 0.98409 1.21966 1.01256 0.96830 0.98978 1.23024 0.93288 0.99722 0.88524 1.68039 1.14100 1.02042 1.33136 1.18773 0.98659 0.90605 0.92365 1.21266 0.94022 0.90557 0.98664 1.22773 0.87738 0.94028 0.94276 0.93792 1.86339 1.42231 1.38574 1.69460 1.21352 0.89726 0.98363 0.88742 0.93653 0.96181 0.92397 0.92798 0.91157 0.76315 0.84807 0.84593 0.84157 0.84340 0.82179 0.83095 0.77769 0.88584 0.95449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.51 11.18 55.49 0.62 -24.89 16 2 C 0.00 -0.05 4.92 -17.43 -0.09 -0.14 16 3 Si 0.90 21.22 29.59 -169.99 -5.03 16.19 16 4 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.24 -6.48 9.58 -15.06 -0.14 -6.63 16 8 H 0.07 1.74 7.89 -52.48 -0.41 1.33 16 9 N -0.58 -14.24 2.94 -172.57 -0.51 -14.74 16 10 C 0.15 3.20 6.52 -3.71 -0.02 3.17 16 11 C -0.14 -2.58 5.51 -26.61 -0.15 -2.73 16 12 C 0.16 2.85 2.20 -67.89 -0.15 2.71 16 13 H 0.09 1.77 7.58 -51.93 -0.39 1.38 16 14 N -0.71 -10.48 5.00 -54.70 -0.27 -10.75 16 15 C 0.55 8.56 7.73 -12.32 -0.10 8.47 16 16 O -0.54 -10.19 15.96 5.32 0.08 -10.10 16 17 C -0.11 -1.41 5.87 -105.01 -0.62 -2.03 16 18 C -0.09 -0.86 9.44 -39.57 -0.37 -1.24 16 19 C -0.10 -0.86 9.74 -39.58 -0.39 -1.24 16 20 C -0.09 -0.86 5.75 -106.73 -0.61 -1.47 16 21 C -0.06 -0.42 9.88 -39.22 -0.39 -0.81 16 22 C -0.17 -1.04 10.03 -39.75 -0.40 -1.44 16 23 C 0.13 1.01 11.15 -17.46 -0.19 0.81 16 24 N -0.47 -5.37 10.34 -10.98 -0.11 -5.48 16 25 C 0.12 1.39 6.60 -84.88 -0.56 0.83 16 26 C -0.03 -0.33 9.56 -38.68 -0.37 -0.70 16 27 C 0.07 1.30 3.37 -26.83 -0.09 1.21 16 28 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 29 O -0.56 -9.53 12.08 -35.23 -0.43 -9.95 16 30 C 0.15 3.26 4.91 -3.93 -0.02 3.24 16 31 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 32 H 0.02 0.44 8.14 -51.92 -0.42 0.02 16 33 H 0.06 1.23 7.93 -51.93 -0.41 0.82 16 34 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.07 1.39 7.61 -51.94 -0.40 0.99 16 36 H 0.40 5.03 6.24 -40.82 -0.25 4.78 16 37 H 0.13 1.07 6.34 -52.49 -0.33 0.73 16 38 H 0.14 0.73 8.06 -52.48 -0.42 0.31 16 39 H 0.14 0.54 8.06 -52.49 -0.42 0.12 16 40 H 0.14 0.40 8.06 -52.48 -0.42 -0.02 16 41 H 0.16 0.75 8.06 -52.49 -0.42 0.33 16 42 H 0.15 2.09 7.60 -52.48 -0.40 1.69 16 43 H 0.38 5.51 9.08 45.56 0.41 5.92 16 44 H 0.10 2.36 6.05 -51.93 -0.31 2.04 16 45 H 0.03 0.66 8.14 -51.92 -0.42 0.23 16 LS Contribution 370.60 15.07 5.58 5.58 Total: -1.00 -33.24 370.60 -9.73 -42.97 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: -5.02 Total: 9.16 kcal Atomic # 6 Polarization: 6.67 SS G_CDS: -4.65 Total: 2.02 kcal Atomic # 7 Polarization: -55.59 SS G_CDS: -0.27 Total: -55.87 kcal Atomic # 8 Polarization: -19.72 SS G_CDS: -0.34 Total: -20.06 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.03 Total: 16.19 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -33.24 -9.73 -42.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090654127.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.616 kcal (2) G-P(sol) polarization free energy of solvation -33.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds