Wall clock time and date at job start Sat Apr 11 2020 06:19:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86796 * 120.00218 * 2 1 4 4 H 1.48506 * 109.47198 * 0.02562 * 3 2 1 5 5 H 1.48499 * 109.47283 * 120.00144 * 3 2 1 6 6 H 1.48496 * 109.47334 * 240.00303 * 3 2 1 7 7 C 1.38813 * 120.00053 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00270 * 170.07775 * 7 2 1 9 9 N 1.36935 * 119.99893 * 350.07593 * 7 2 1 10 10 C 1.46925 * 120.63063 * 148.45183 * 9 7 2 11 11 C 1.53624 * 108.54207 * 126.36926 * 10 9 7 12 12 C 1.53044 * 109.24341 * 54.85736 * 11 10 9 13 13 H 1.09002 * 109.44456 * 58.52382 * 12 11 10 14 14 N 1.46504 * 109.45949 * 178.48904 * 12 11 10 15 15 C 1.34774 * 119.99759 * 275.06656 * 14 12 11 16 16 O 1.21582 * 120.00263 * 0.02562 * 15 14 12 17 17 C 1.47566 * 119.99326 * 180.02562 * 15 14 12 18 18 C 1.38712 * 120.43930 * 5.82560 * 17 15 14 19 19 C 1.38994 * 120.75318 * 179.97438 * 18 17 15 20 20 C 1.36341 * 121.19299 * 0.02562 * 19 18 17 21 21 C 1.40351 * 119.92940 * 359.97438 * 20 19 18 22 22 C 1.40687 * 122.10294 * 179.97438 * 21 20 19 23 23 C 1.36265 * 118.66494 * 180.02562 * 22 21 20 24 24 N 1.32508 * 121.84246 * 359.97438 * 23 22 21 25 25 C 1.31313 * 122.72160 * 0.02739 * 24 23 22 26 26 C 1.40143 * 119.91569 * 359.74119 * 25 24 23 27 27 C 1.53038 * 109.53734 * 298.51104 * 12 11 10 28 28 H 1.09002 * 109.49845 * 301.41563 * 27 12 11 29 29 O 1.42903 * 109.50002 * 181.31451 * 27 12 11 30 30 C 1.46928 * 120.63143 * 328.73394 * 9 7 2 31 31 H 0.97000 * 120.00205 * 359.97438 * 1 2 3 32 32 H 1.09000 * 109.58806 * 246.20139 * 10 9 7 33 33 H 1.08996 * 109.58872 * 6.63067 * 10 9 7 34 34 H 1.09000 * 109.63839 * 294.86681 * 11 10 9 35 35 H 1.09004 * 109.45816 * 174.74137 * 11 10 9 36 36 H 0.96996 * 119.99627 * 95.07191 * 14 12 11 37 37 H 1.08001 * 119.62044 * 359.97438 * 18 17 15 38 38 H 1.07998 * 119.40035 * 179.97438 * 19 18 17 39 39 H 1.07997 * 120.03604 * 179.97438 * 20 19 18 40 40 H 1.07995 * 120.66996 * 359.97438 * 22 21 20 41 41 H 1.08000 * 119.08046 * 179.97438 * 23 22 21 42 42 H 1.08001 * 120.04448 * 180.02562 * 25 24 23 43 43 H 0.96689 * 114.00065 * 180.16051 * 29 27 12 44 44 H 1.08996 * 109.58826 * 353.37323 * 30 9 7 45 45 H 1.09001 * 109.58942 * 113.65280 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2852 2.7465 0.0006 5 1 3.1040 1.6963 1.2125 6 1 3.1039 1.6964 -1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0781 -1.2091 -0.1617 9 7 1.3409 -2.3793 0.2033 10 6 1.8024 -3.6221 -0.4299 11 6 1.9812 -4.6890 0.6609 12 6 0.6753 -4.8314 1.4461 13 1 -0.1299 -5.1058 0.7645 14 7 0.8292 -5.8733 2.4644 15 6 0.6268 -7.1661 2.1416 16 8 0.3170 -7.4677 1.0053 17 6 0.7813 -8.2155 3.1676 18 6 1.0157 -7.8748 4.4916 19 6 1.1617 -8.8578 5.4633 20 6 1.0800 -10.1814 5.1466 21 6 0.8440 -10.5705 3.8189 22 6 0.7517 -11.9226 3.4412 23 6 0.5212 -12.2211 2.1318 24 7 0.3825 -11.2762 1.2132 25 6 0.4569 -9.9959 1.4951 26 6 0.6864 -9.5829 2.8145 27 6 0.3383 -3.5015 2.1242 28 1 1.1544 -3.2140 2.7871 29 8 -0.8649 -3.6438 2.8820 30 6 0.1441 -2.4222 1.0545 31 1 -0.4850 0.8400 0.0004 32 1 1.0626 -3.9587 -1.1563 33 1 2.7546 -3.4458 -0.9300 34 1 2.7818 -4.3904 1.3376 35 1 2.2331 -5.6431 0.1978 36 1 1.0766 -5.6327 3.3709 37 1 1.0855 -6.8337 4.7706 38 1 1.3440 -8.5679 6.4876 39 1 1.1967 -10.9297 5.9166 40 1 0.8622 -12.7080 4.1740 41 1 0.4496 -13.2569 1.8343 42 1 0.3367 -9.2619 0.7120 43 1 -1.1404 -2.8369 3.3379 44 1 0.0018 -1.4538 1.5341 45 1 -0.7286 -2.6603 0.4463 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090693490.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:19 Heat of formation + Delta-G solvation = -0.100925 kcal Electronic energy + Delta-G solvation = -29313.123194 eV Core-core repulsion = 25296.206473 eV Total energy + Delta-G solvation = -4016.916721 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.25873 -39.66529 -37.98880 -37.35569 -35.29782 -34.53746 -33.20124 -32.21684 -31.41081 -30.28519 -29.19087 -28.78919 -25.54286 -24.64451 -23.71473 -23.45372 -22.38987 -21.69953 -20.57541 -19.56629 -18.16443 -17.99329 -17.00520 -16.92960 -16.62291 -16.28470 -15.87327 -15.23945 -15.04614 -14.95453 -14.67422 -14.14251 -13.95415 -13.90586 -13.74386 -13.46670 -13.28458 -12.93503 -12.67722 -12.34230 -12.32651 -12.22517 -12.01713 -11.85223 -11.67394 -11.19222 -10.86776 -10.82584 -10.48136 -10.36428 -10.24291 -10.08959 -9.93791 -9.63400 -9.49698 -9.41171 -9.35117 -8.90253 -8.58650 -8.32018 -6.75693 -5.89390 -3.39152 -0.12474 0.63375 1.43250 2.54287 3.13433 3.17974 3.31515 3.37371 3.37737 3.91567 4.24817 4.30778 4.37530 4.41994 4.51607 4.55903 4.65701 4.68146 4.81577 5.03255 5.26042 5.30221 5.37484 5.42828 5.45683 5.47014 5.54775 5.67460 5.80149 5.87751 5.88462 5.95809 6.03703 6.06104 6.16332 6.34975 6.40162 6.43014 6.58568 6.68037 6.77381 6.88701 7.10897 7.45555 7.57588 7.68615 7.87544 8.05630 8.24910 8.36110 9.09643 9.70166 10.27803 11.18457 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.024549 B = 0.002449 C = 0.002344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.293845 B =11432.470768 C =11944.117418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.005 3.995 3 Si 0.907 3.093 4 H -0.290 1.290 5 H -0.283 1.283 6 H -0.281 1.281 7 C -0.257 4.257 8 H 0.067 0.933 9 N -0.589 5.589 10 C 0.145 3.855 11 C -0.140 4.140 12 C 0.161 3.839 13 H 0.092 0.908 14 N -0.703 5.703 15 C 0.557 3.443 16 O -0.534 6.534 17 C -0.093 4.093 18 C -0.081 4.081 19 C -0.105 4.105 20 C -0.091 4.091 21 C -0.030 4.030 22 C -0.166 4.166 23 C 0.078 3.922 24 N -0.491 5.491 25 C 0.148 3.852 26 C -0.080 4.080 27 C 0.071 3.929 28 H 0.051 0.949 29 O -0.574 6.574 30 C 0.149 3.851 31 H 0.256 0.744 32 H 0.025 0.975 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.064 0.936 36 H 0.397 0.603 37 H 0.134 0.866 38 H 0.134 0.866 39 H 0.134 0.866 40 H 0.137 0.863 41 H 0.152 0.848 42 H 0.202 0.798 43 H 0.377 0.623 44 H 0.096 0.904 45 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.162 -18.668 13.417 23.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.194 4.194 3 Si 0.737 3.263 4 H -0.215 1.215 5 H -0.209 1.209 6 H -0.207 1.207 7 C -0.386 4.386 8 H 0.085 0.915 9 N -0.313 5.313 10 C 0.018 3.982 11 C -0.180 4.180 12 C 0.058 3.942 13 H 0.110 0.890 14 N -0.352 5.352 15 C 0.344 3.656 16 O -0.413 6.413 17 C -0.098 4.098 18 C -0.100 4.100 19 C -0.125 4.125 20 C -0.109 4.109 21 C -0.035 4.035 22 C -0.186 4.186 23 C -0.066 4.066 24 N -0.199 5.199 25 C -0.021 4.021 26 C -0.083 4.083 27 C 0.010 3.990 28 H 0.069 0.931 29 O -0.378 6.378 30 C 0.021 3.979 31 H 0.067 0.933 32 H 0.043 0.957 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.083 0.917 36 H 0.232 0.768 37 H 0.151 0.849 38 H 0.152 0.848 39 H 0.152 0.848 40 H 0.155 0.845 41 H 0.169 0.831 42 H 0.218 0.782 43 H 0.223 0.777 44 H 0.115 0.885 45 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 1.710 -19.707 11.528 22.895 hybrid contribution 0.662 1.781 1.757 2.588 sum 2.371 -17.926 13.284 22.437 Atomic orbital electron populations 1.69938 1.05271 1.25834 1.53850 1.25211 0.95467 0.98552 1.00161 0.86305 0.78822 0.82998 0.78210 1.21540 1.20949 1.20717 1.19154 0.90837 0.83625 1.45017 0.91538 1.43977 1.30769 1.04186 1.52398 1.21041 0.98409 0.86352 0.92400 1.22508 0.96009 1.00257 0.99255 1.21096 0.98884 0.84935 0.89332 0.89025 1.46052 1.69038 1.05770 1.14305 1.18041 0.77419 0.82660 0.87465 1.90567 1.48369 1.81116 1.21240 1.20018 1.02895 0.92750 0.94157 1.21471 0.96420 1.00284 0.91831 1.20908 0.99045 0.92658 0.99852 1.21142 0.98224 0.96736 0.94835 1.18167 0.98342 0.93397 0.93640 1.21856 1.03298 0.95243 0.98187 1.22335 0.95658 0.99182 0.89379 1.67695 1.12998 1.01774 1.37414 1.24690 0.89021 0.92892 0.95543 1.18883 1.01545 0.92340 0.95557 1.23011 0.85894 0.95711 0.94353 0.93060 1.86407 1.43971 1.39551 1.67901 1.21447 0.89237 0.96752 0.90419 0.93345 0.95670 0.92038 0.91988 0.91687 0.76804 0.84857 0.84784 0.84777 0.84500 0.83116 0.78206 0.77658 0.88549 0.95178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.11 11.00 55.49 0.61 -24.50 16 2 C 0.00 0.13 5.07 -17.43 -0.09 0.04 16 3 Si 0.91 20.80 29.56 -169.99 -5.03 15.78 16 4 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 5 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 6 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.26 -6.71 9.59 -15.06 -0.14 -6.86 16 8 H 0.07 1.70 7.85 -52.49 -0.41 1.29 16 9 N -0.59 -14.06 2.98 -172.05 -0.51 -14.57 16 10 C 0.14 2.97 6.54 -3.49 -0.02 2.95 16 11 C -0.14 -2.43 5.67 -26.38 -0.15 -2.58 16 12 C 0.16 2.77 2.11 -67.89 -0.14 2.63 16 13 H 0.09 1.82 7.58 -51.93 -0.39 1.43 16 14 N -0.70 -9.99 4.87 -54.79 -0.27 -10.26 16 15 C 0.56 8.35 7.70 -12.46 -0.10 8.26 16 16 O -0.53 -9.49 13.14 5.29 0.07 -9.42 16 17 C -0.09 -1.17 5.90 -104.66 -0.62 -1.79 16 18 C -0.08 -0.76 9.51 -39.13 -0.37 -1.13 16 19 C -0.11 -0.80 9.93 -39.98 -0.40 -1.20 16 20 C -0.09 -0.73 9.79 -39.47 -0.39 -1.12 16 21 C -0.03 -0.32 5.74 -106.84 -0.61 -0.94 16 22 C -0.17 -1.54 9.88 -39.37 -0.39 -1.93 16 23 C 0.08 0.83 11.07 -17.97 -0.20 0.63 16 24 N -0.49 -6.81 10.30 -13.21 -0.14 -6.95 16 25 C 0.15 2.15 10.49 -17.06 -0.18 1.97 16 26 C -0.08 -1.05 5.76 -106.58 -0.61 -1.67 16 27 C 0.07 1.27 3.14 -26.61 -0.08 1.18 16 28 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 29 O -0.57 -9.30 13.16 -35.23 -0.46 -9.76 16 30 C 0.15 3.33 4.88 -3.71 -0.02 3.31 16 31 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 32 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.06 1.22 7.93 -51.93 -0.41 0.81 16 34 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.40 4.62 6.67 -40.82 -0.27 4.35 16 37 H 0.13 0.98 6.42 -52.49 -0.34 0.65 16 38 H 0.13 0.63 8.06 -52.49 -0.42 0.20 16 39 H 0.13 0.68 8.06 -52.49 -0.42 0.25 16 40 H 0.14 0.81 8.06 -52.49 -0.42 0.38 16 41 H 0.15 1.15 8.06 -52.49 -0.42 0.73 16 42 H 0.20 3.17 4.97 -52.49 -0.26 2.91 16 43 H 0.38 4.85 9.08 45.56 0.41 5.27 16 44 H 0.10 2.37 6.07 -51.93 -0.32 2.05 16 45 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 366.93 15.07 5.53 5.53 Total: -1.00 -31.98 366.93 -9.64 -41.62 By element: Atomic # 1 Polarization: 15.70 SS G_CDS: -4.93 Total: 10.77 kcal Atomic # 6 Polarization: 6.27 SS G_CDS: -4.51 Total: 1.76 kcal Atomic # 7 Polarization: -55.97 SS G_CDS: -0.31 Total: -56.27 kcal Atomic # 8 Polarization: -18.79 SS G_CDS: -0.39 Total: -19.18 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.03 Total: 15.78 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.98 -9.64 -41.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090693490.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.518 kcal (2) G-P(sol) polarization free energy of solvation -31.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds