Wall clock time and date at job start Sat Apr 11 2020 06:20:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86797 * 120.00306 * 2 1 4 4 H 1.48500 * 109.47281 * 86.22485 * 3 2 1 5 5 H 1.48497 * 109.47253 * 206.22868 * 3 2 1 6 6 H 1.48501 * 109.46944 * 326.22859 * 3 2 1 7 7 C 1.38816 * 119.99645 * 179.71443 * 2 1 3 8 8 H 1.08000 * 119.99660 * 162.87301 * 7 2 1 9 9 N 1.36929 * 120.00312 * 342.88088 * 7 2 1 10 10 C 1.46928 * 120.63162 * 332.01318 * 9 7 2 11 11 C 1.53197 * 108.77423 * 233.59085 * 10 9 7 12 12 C 1.53034 * 109.30828 * 305.35851 * 11 10 9 13 13 H 1.09000 * 109.46324 * 301.34625 * 12 11 10 14 14 N 1.46508 * 109.45732 * 181.37286 * 12 11 10 15 15 C 1.34776 * 119.99445 * 85.00252 * 14 12 11 16 16 O 1.21547 * 120.00570 * 0.02562 * 15 14 12 17 17 C 1.47889 * 119.99807 * 180.02562 * 15 14 12 18 18 C 1.40600 * 119.72846 * 359.97438 * 17 15 14 19 19 C 1.35854 * 120.95429 * 179.97438 * 18 17 15 20 20 C 1.40494 * 119.87579 * 0.02562 * 19 18 17 21 21 C 1.40484 * 121.83481 * 179.97438 * 20 19 18 22 22 N 1.31210 * 119.94110 * 180.02562 * 21 20 19 23 23 C 1.32558 * 122.80080 * 0.02562 * 22 21 20 24 24 C 1.36216 * 121.85011 * 359.97438 * 23 22 21 25 25 C 1.40767 * 118.67535 * 0.02562 * 24 23 22 26 26 C 1.38528 * 119.73277 * 179.72620 * 17 15 14 27 27 C 1.53040 * 109.54157 * 61.37268 * 12 11 10 28 28 H 1.08999 * 109.49541 * 58.60861 * 27 12 11 29 29 O 1.42891 * 109.50079 * 178.68109 * 27 12 11 30 30 C 1.46925 * 120.63419 * 151.73386 * 9 7 2 31 31 H 0.97003 * 120.00029 * 0.02562 * 1 2 3 32 32 H 1.09008 * 109.58154 * 353.37087 * 10 9 7 33 33 H 1.08991 * 109.59090 * 113.65508 * 10 9 7 34 34 H 1.08996 * 109.49714 * 65.31304 * 11 10 9 35 35 H 1.09007 * 109.49077 * 185.37852 * 11 10 9 36 36 H 0.96995 * 120.00546 * 265.00436 * 14 12 11 37 37 H 1.08004 * 119.52425 * 359.97438 * 18 17 15 38 38 H 1.07998 * 120.05929 * 180.02562 * 19 18 17 39 39 H 1.08002 * 120.02892 * 0.02562 * 21 20 19 40 40 H 1.07997 * 119.07383 * 179.97438 * 23 22 21 41 41 H 1.07996 * 120.66325 * 180.02562 * 24 23 22 42 42 H 1.08001 * 120.36373 * 359.97438 * 26 17 15 43 43 H 0.96706 * 113.99985 * 179.97438 * 29 27 12 44 44 H 1.09001 * 109.58930 * 246.20016 * 30 9 7 45 45 H 1.09003 * 109.58076 * 6.62492 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4179 2.0925 1.3970 5 1 3.5854 1.4184 -0.6188 6 1 1.4899 2.6283 -0.7783 7 6 2.0102 -1.2022 0.0060 8 1 3.0542 -1.2243 -0.2693 9 7 1.3710 -2.3600 0.3608 10 6 0.2274 -2.3315 1.2828 11 6 0.5001 -3.3016 2.4368 12 6 0.8153 -4.6874 1.8691 13 1 -0.0250 -5.0328 1.2668 14 7 1.0444 -5.6255 2.9708 15 6 0.0005 -6.2449 3.5565 16 8 -1.1310 -6.0255 3.1705 17 6 0.2317 -7.1915 4.6690 18 6 1.5429 -7.4414 5.1107 19 6 1.7838 -8.3057 6.1308 20 6 0.7127 -8.9636 6.7583 21 6 0.9146 -9.8656 7.8162 22 7 -0.1130 -10.4600 8.3752 23 6 -1.3627 -10.2507 7.9859 24 6 -1.6654 -9.3956 6.9698 25 6 -0.6152 -8.7199 6.3201 26 6 -0.8458 -7.8207 5.2708 27 6 2.0702 -4.6098 0.9966 28 1 2.9053 -4.2414 1.5924 29 8 2.3813 -5.9099 0.4919 30 6 1.8118 -3.6539 -0.1779 31 1 -0.4850 0.8401 -0.0004 32 1 0.1001 -1.3228 1.6759 33 1 -0.6761 -2.6343 0.7539 34 1 1.3498 -2.9449 3.0188 35 1 -0.3801 -3.3617 3.0771 36 1 1.9473 -5.8009 3.2787 37 1 2.3706 -6.9391 4.6321 38 1 2.7968 -8.4867 6.4587 39 1 1.9147 -10.0697 8.1691 40 1 -2.1634 -10.7728 8.4886 41 1 -2.6906 -9.2392 6.6685 42 1 -1.8521 -7.6232 4.9322 43 1 3.1672 -5.9356 -0.0712 44 1 1.0353 -4.0648 -0.8231 45 1 2.7302 -3.5180 -0.7491 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090710962.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:01 Heat of formation + Delta-G solvation = -6.172210 kcal Electronic energy + Delta-G solvation = -28797.592646 eV Core-core repulsion = 24780.412655 eV Total energy + Delta-G solvation = -4017.179992 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 1.68 seconds Orbital eigenvalues (eV) -41.20825 -39.87163 -38.18581 -37.09257 -35.45584 -34.49398 -33.33343 -32.27810 -31.46554 -29.96344 -29.92833 -28.57613 -25.80684 -24.56969 -24.11301 -22.71553 -22.41656 -21.87498 -20.73262 -19.68779 -18.41145 -17.97659 -17.17173 -16.97369 -16.55745 -16.31216 -15.81387 -15.27267 -14.99783 -14.85597 -14.43158 -14.37064 -14.05769 -13.97026 -13.90958 -13.70564 -13.26775 -13.14576 -12.85639 -12.65660 -12.42202 -12.28710 -12.03795 -11.62201 -11.44004 -11.15067 -10.92174 -10.73406 -10.59615 -10.38514 -10.29292 -10.06973 -9.96761 -9.85383 -9.77437 -9.50313 -9.43234 -8.83308 -8.50944 -8.43363 -6.81714 -5.88653 -3.33608 -0.09935 0.36213 1.51786 2.31641 3.17977 3.26232 3.32168 3.38872 3.40557 3.78257 4.03840 4.16181 4.30083 4.36672 4.40813 4.47319 4.58221 4.66596 4.82934 4.89790 5.21874 5.25014 5.28455 5.32856 5.37646 5.43368 5.49071 5.57912 5.67672 5.70802 5.90718 5.92356 5.97257 6.06090 6.22599 6.25526 6.37700 6.43284 6.46406 6.61544 6.72336 6.78155 7.24080 7.55802 7.59308 7.61786 7.69405 7.86363 8.28885 8.33748 9.09075 9.71296 10.27254 11.19729 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.023592 B = 0.002195 C = 0.002151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.538097 B =12753.803526 C =13016.947396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.005 3.995 3 Si 0.905 3.095 4 H -0.287 1.287 5 H -0.278 1.278 6 H -0.290 1.290 7 C -0.260 4.260 8 H 0.067 0.933 9 N -0.588 5.588 10 C 0.171 3.829 11 C -0.146 4.146 12 C 0.162 3.838 13 H 0.090 0.910 14 N -0.707 5.707 15 C 0.552 3.448 16 O -0.534 6.534 17 C -0.105 4.105 18 C -0.092 4.092 19 C -0.092 4.092 20 C -0.099 4.099 21 C 0.143 3.857 22 N -0.485 5.485 23 C 0.070 3.930 24 C -0.143 4.143 25 C -0.034 4.034 26 C -0.046 4.046 27 C 0.079 3.921 28 H 0.057 0.943 29 O -0.571 6.571 30 C 0.121 3.879 31 H 0.256 0.744 32 H 0.093 0.907 33 H 0.025 0.975 34 H 0.059 0.941 35 H 0.063 0.937 36 H 0.396 0.604 37 H 0.132 0.868 38 H 0.139 0.861 39 H 0.165 0.835 40 H 0.155 0.845 41 H 0.142 0.858 42 H 0.147 0.853 43 H 0.374 0.626 44 H 0.030 0.970 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.725 -18.462 13.421 23.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.194 4.194 3 Si 0.735 3.265 4 H -0.214 1.214 5 H -0.203 1.203 6 H -0.217 1.217 7 C -0.390 4.390 8 H 0.085 0.915 9 N -0.312 5.312 10 C 0.045 3.955 11 C -0.187 4.187 12 C 0.059 3.941 13 H 0.108 0.892 14 N -0.357 5.357 15 C 0.338 3.662 16 O -0.412 6.412 17 C -0.110 4.110 18 C -0.110 4.110 19 C -0.112 4.112 20 C -0.102 4.102 21 C -0.029 4.029 22 N -0.193 5.193 23 C -0.072 4.072 24 C -0.163 4.163 25 C -0.039 4.039 26 C -0.065 4.065 27 C 0.018 3.982 28 H 0.075 0.925 29 O -0.376 6.376 30 C -0.007 4.007 31 H 0.066 0.934 32 H 0.112 0.888 33 H 0.043 0.957 34 H 0.077 0.923 35 H 0.081 0.919 36 H 0.231 0.769 37 H 0.150 0.850 38 H 0.157 0.843 39 H 0.182 0.818 40 H 0.172 0.828 41 H 0.160 0.840 42 H 0.165 0.835 43 H 0.221 0.779 44 H 0.048 0.952 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.250 -18.903 14.135 23.710 hybrid contribution 1.197 1.590 -0.922 2.193 sum 3.448 -17.313 13.213 22.050 Atomic orbital electron populations 1.70036 1.05307 1.25787 1.53049 1.25096 0.95315 0.98609 1.00405 0.86244 0.79116 0.83508 0.77677 1.21352 1.20347 1.21678 1.19168 0.92613 0.84707 1.42474 0.91481 1.44065 1.36018 1.01131 1.49985 1.20835 0.88749 0.98398 0.87568 1.22609 1.01094 0.94153 1.00823 1.21069 0.97763 0.89228 0.86072 0.89229 1.46030 1.09039 1.44579 1.36052 1.18186 0.85254 0.80434 0.82324 1.90792 1.22356 1.64109 1.63960 1.20161 0.94038 0.99077 0.97704 1.21021 0.95852 0.97599 0.96558 1.20874 0.98499 0.96062 0.95725 1.19157 0.93624 0.99156 0.98214 1.23246 0.98314 0.90647 0.90690 1.67388 0.99844 1.23518 1.28575 1.22195 0.93625 0.96429 0.94983 1.22019 0.99712 0.97428 0.97112 1.18155 0.93040 0.96711 0.95995 1.21461 0.99887 0.92578 0.92571 1.22876 0.95881 0.83139 0.96266 0.92520 1.86479 1.50773 1.30222 1.70108 1.21614 0.98862 0.87392 0.92807 0.93400 0.88843 0.95723 0.92271 0.91868 0.76946 0.85032 0.84286 0.81785 0.82820 0.84047 0.83489 0.77923 0.95229 0.92078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.52 11.20 55.49 0.62 -24.90 16 2 C 0.01 0.14 4.91 -17.43 -0.09 0.05 16 3 Si 0.90 21.02 29.59 -169.99 -5.03 15.99 16 4 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 6 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 7 C -0.26 -6.83 9.58 -15.06 -0.14 -6.97 16 8 H 0.07 1.71 7.89 -52.49 -0.41 1.30 16 9 N -0.59 -14.09 2.99 -172.05 -0.51 -14.60 16 10 C 0.17 4.01 5.30 -3.71 -0.02 3.99 16 11 C -0.15 -2.81 5.65 -26.61 -0.15 -2.96 16 12 C 0.16 2.84 2.12 -67.89 -0.14 2.70 16 13 H 0.09 1.82 7.57 -51.93 -0.39 1.43 16 14 N -0.71 -10.24 4.87 -54.69 -0.27 -10.51 16 15 C 0.55 8.51 7.73 -12.31 -0.10 8.41 16 16 O -0.53 -10.22 15.97 5.32 0.09 -10.14 16 17 C -0.11 -1.28 5.87 -104.95 -0.62 -1.90 16 18 C -0.09 -0.85 9.44 -39.55 -0.37 -1.22 16 19 C -0.09 -0.72 9.77 -39.59 -0.39 -1.11 16 20 C -0.10 -0.92 5.75 -106.78 -0.61 -1.53 16 21 C 0.14 1.19 11.04 -16.97 -0.19 1.01 16 22 N -0.49 -4.77 10.29 -13.15 -0.14 -4.90 16 23 C 0.07 0.61 11.07 -17.97 -0.20 0.41 16 24 C -0.14 -1.25 9.88 -39.35 -0.39 -1.63 16 25 C -0.03 -0.35 5.74 -106.83 -0.61 -0.96 16 26 C -0.05 -0.53 9.38 -38.78 -0.36 -0.89 16 27 C 0.08 1.30 3.16 -26.38 -0.08 1.21 16 28 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 29 O -0.57 -8.15 13.16 -35.23 -0.46 -8.61 16 30 C 0.12 2.39 6.17 -3.48 -0.02 2.37 16 31 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 32 H 0.09 2.44 6.05 -51.92 -0.31 2.13 16 33 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.06 1.22 8.14 -51.92 -0.42 0.80 16 36 H 0.40 4.59 6.58 -40.82 -0.27 4.32 16 37 H 0.13 0.96 6.34 -52.48 -0.33 0.62 16 38 H 0.14 0.64 8.06 -52.49 -0.42 0.22 16 39 H 0.17 0.84 8.06 -52.49 -0.42 0.42 16 40 H 0.15 0.92 8.06 -52.49 -0.42 0.49 16 41 H 0.14 0.92 8.06 -52.49 -0.42 0.49 16 42 H 0.15 1.69 7.62 -52.49 -0.40 1.29 16 43 H 0.37 3.75 9.09 45.56 0.41 4.17 16 44 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.06 1.13 7.93 -51.93 -0.41 0.72 16 LS Contribution 372.27 15.07 5.61 5.61 Total: -1.00 -33.43 372.27 -9.64 -43.07 By element: Atomic # 1 Polarization: 13.11 SS G_CDS: -5.06 Total: 8.04 kcal Atomic # 6 Polarization: 5.44 SS G_CDS: -4.49 Total: 0.95 kcal Atomic # 7 Polarization: -54.62 SS G_CDS: -0.29 Total: -54.92 kcal Atomic # 8 Polarization: -18.37 SS G_CDS: -0.38 Total: -18.75 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.03 Total: 15.99 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.43 -9.64 -43.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090710962.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.895 kcal (2) G-P(sol) polarization free energy of solvation -33.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.68 seconds