Wall clock time and date at job start Sat Apr 11 2020 06:20:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86805 * 119.99630 * 2 1 4 4 H 1.48494 * 109.47004 * 270.00116 * 3 2 1 5 5 H 1.48493 * 109.47193 * 30.00374 * 3 2 1 6 6 H 1.48499 * 109.46804 * 150.00344 * 3 2 1 7 7 C 1.38809 * 120.00353 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00299 * 163.07868 * 7 2 1 9 9 N 1.36939 * 119.99931 * 343.08804 * 7 2 1 10 10 C 1.46924 * 120.63512 * 151.83166 * 9 7 2 11 11 C 1.53186 * 108.77614 * 126.36490 * 10 9 7 12 12 C 1.53037 * 109.31643 * 54.63672 * 11 10 9 13 13 H 1.09004 * 109.46025 * 58.63851 * 12 11 10 14 14 N 1.46494 * 109.46335 * 178.61471 * 12 11 10 15 15 C 1.34780 * 120.00002 * 275.02667 * 14 12 11 16 16 O 1.21501 * 119.99998 * 359.97438 * 15 14 12 17 17 C 1.48277 * 120.00069 * 179.97438 * 15 14 12 18 18 C 1.40279 * 119.23793 * 179.97438 * 17 15 14 19 19 C 1.36509 * 119.81676 * 180.02562 * 18 17 15 20 20 C 1.40759 * 118.24192 * 0.02562 * 19 18 17 21 21 C 1.40415 * 121.28011 * 179.97438 * 20 19 18 22 22 C 1.36133 * 119.64856 * 180.02562 * 21 20 19 23 23 C 1.39430 * 120.91877 * 0.02562 * 22 21 20 24 24 C 1.35999 * 121.08179 * 359.97438 * 23 22 21 25 25 C 1.40823 * 119.73328 * 0.27777 * 24 23 22 26 26 N 1.31873 * 119.23951 * 0.02562 * 17 15 14 27 27 C 1.53039 * 109.52605 * 298.62656 * 12 11 10 28 28 H 1.09001 * 109.49933 * 301.42140 * 27 12 11 29 29 O 1.42902 * 109.50113 * 181.32291 * 27 12 11 30 30 C 1.46937 * 120.62699 * 331.80195 * 9 7 2 31 31 H 0.96994 * 120.00197 * 359.97438 * 1 2 3 32 32 H 1.09000 * 109.58535 * 6.57159 * 10 9 7 33 33 H 1.09001 * 109.58364 * 246.15205 * 10 9 7 34 34 H 1.08999 * 109.50251 * 294.68042 * 11 10 9 35 35 H 1.09004 * 109.52484 * 174.60299 * 11 10 9 36 36 H 0.96995 * 120.00519 * 95.02376 * 14 12 11 37 37 H 1.08000 * 120.09196 * 359.97438 * 18 17 15 38 38 H 1.07994 * 120.87784 * 179.97438 * 19 18 17 39 39 H 1.08003 * 120.17810 * 0.06870 * 21 20 19 40 40 H 1.08006 * 119.54076 * 179.97438 * 22 21 20 41 41 H 1.07998 * 119.45931 * 180.02562 * 23 22 21 42 42 H 1.07995 * 120.13043 * 180.02562 * 24 23 22 43 43 H 0.96693 * 114.00453 * 180.02562 * 29 27 12 44 44 H 1.09000 * 109.58426 * 353.42018 * 30 9 7 45 45 H 1.08993 * 109.58329 * 113.85014 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4403 0.7000 7 6 2.0104 -1.2021 -0.0005 8 1 3.0553 -1.2222 -0.2728 9 7 1.3702 -2.3625 0.3439 10 6 1.8141 -3.6527 -0.2011 11 6 2.0685 -4.6177 0.9611 12 6 0.8135 -4.7021 1.8329 13 1 -0.0269 -5.0420 1.2276 14 7 1.0419 -5.6494 2.9268 15 6 0.8380 -6.9672 2.7307 16 8 0.4645 -7.3694 1.6467 17 6 1.0697 -7.9260 3.8377 18 6 0.8521 -9.2940 3.6160 19 6 1.0612 -10.1871 4.6270 20 6 1.4933 -9.6940 5.8726 21 6 1.7274 -10.5556 6.9564 22 6 2.1443 -10.0427 8.1465 23 6 2.3423 -8.6718 8.3059 24 6 2.1257 -7.8070 7.2788 25 6 1.6887 -8.2975 6.0332 26 7 1.4746 -7.4731 5.0081 27 6 0.4991 -3.3208 2.4120 28 1 1.3491 -2.9694 2.9969 29 8 -0.6549 -3.4065 3.2505 30 6 0.2265 -2.3412 1.2662 31 1 -0.4850 0.8400 0.0004 32 1 2.7345 -3.5126 -0.7680 33 1 1.0403 -4.0602 -0.8517 34 1 2.9036 -4.2541 1.5599 35 1 2.3058 -5.6064 0.5684 36 1 1.3398 -5.3283 3.7922 37 1 0.5192 -9.6396 2.6485 38 1 0.8986 -11.2439 4.4754 39 1 1.5782 -11.6196 6.8462 40 1 2.3235 -10.7070 8.9791 41 1 2.6738 -8.2904 9.2604 42 1 2.2842 -6.7481 7.4192 43 1 -0.9127 -2.5655 3.6521 44 1 0.0995 -1.3357 1.6676 45 1 -0.6767 -2.6417 0.7353 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090751565.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:20 Heat of formation + Delta-G solvation = -4.526878 kcal Electronic energy + Delta-G solvation = -28970.191657 eV Core-core repulsion = 24953.083012 eV Total energy + Delta-G solvation = -4017.108645 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.23892 -39.64897 -38.01039 -36.99842 -35.23839 -34.47051 -33.79360 -32.17784 -31.01517 -30.38735 -29.35990 -28.80864 -25.84375 -24.74510 -23.90554 -22.47783 -22.42898 -21.83704 -20.55401 -19.60294 -18.42337 -17.96652 -17.49513 -16.84726 -16.55446 -15.86890 -15.53878 -15.22593 -15.01093 -14.77467 -14.68236 -14.20321 -14.11901 -13.81948 -13.63485 -13.44064 -13.42510 -13.23425 -12.66348 -12.20755 -12.08224 -12.02362 -11.85053 -11.84007 -11.65299 -11.20757 -10.91907 -10.82934 -10.77400 -10.40106 -10.31176 -10.21281 -10.00113 -9.78859 -9.50482 -9.32287 -9.12362 -8.74223 -8.62080 -8.51350 -6.76308 -5.86082 -3.29799 -0.08583 0.38047 1.62651 2.25381 3.15912 3.19746 3.33768 3.41031 3.43104 3.85204 3.88391 4.20945 4.41663 4.43247 4.47015 4.59047 4.66819 4.79623 4.83872 5.01462 5.14121 5.30946 5.41411 5.41956 5.46406 5.59961 5.62535 5.67392 5.73126 5.93824 5.98006 6.02135 6.04570 6.11948 6.14181 6.25162 6.44913 6.45371 6.48206 6.71818 6.83702 6.92629 7.13694 7.38160 7.47834 7.72966 7.79213 8.13413 8.34643 8.38122 9.12350 9.75182 10.31631 11.22433 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.020947 B = 0.002376 C = 0.002255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1336.387982 B =11781.089615 C =12416.117129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.002 3.998 3 Si 0.903 3.097 4 H -0.286 1.286 5 H -0.289 1.289 6 H -0.279 1.279 7 C -0.255 4.255 8 H 0.068 0.932 9 N -0.589 5.589 10 C 0.145 3.855 11 C -0.140 4.140 12 C 0.160 3.840 13 H 0.090 0.910 14 N -0.690 5.690 15 C 0.564 3.436 16 O -0.534 6.534 17 C 0.125 3.875 18 C -0.124 4.124 19 C -0.064 4.064 20 C -0.090 4.090 21 C -0.101 4.101 22 C -0.110 4.110 23 C -0.106 4.106 24 C -0.083 4.083 25 C 0.124 3.876 26 N -0.442 5.442 27 C 0.072 3.928 28 H 0.053 0.947 29 O -0.572 6.572 30 C 0.149 3.851 31 H 0.255 0.745 32 H 0.061 0.939 33 H 0.025 0.975 34 H 0.062 0.938 35 H 0.064 0.936 36 H 0.408 0.592 37 H 0.152 0.848 38 H 0.146 0.854 39 H 0.131 0.869 40 H 0.128 0.872 41 H 0.131 0.869 42 H 0.139 0.861 43 H 0.376 0.624 44 H 0.094 0.906 45 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.440 -19.958 16.594 26.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.196 4.196 3 Si 0.733 3.267 4 H -0.213 1.213 5 H -0.215 1.215 6 H -0.204 1.204 7 C -0.384 4.384 8 H 0.086 0.914 9 N -0.313 5.313 10 C 0.019 3.981 11 C -0.180 4.180 12 C 0.056 3.944 13 H 0.108 0.892 14 N -0.339 5.339 15 C 0.348 3.652 16 O -0.411 6.411 17 C -0.029 4.029 18 C -0.145 4.145 19 C -0.090 4.090 20 C -0.092 4.092 21 C -0.120 4.120 22 C -0.128 4.128 23 C -0.126 4.126 24 C -0.102 4.102 25 C 0.000 4.000 26 N -0.154 5.154 27 C 0.011 3.989 28 H 0.071 0.929 29 O -0.377 6.377 30 C 0.022 3.978 31 H 0.065 0.935 32 H 0.080 0.920 33 H 0.042 0.958 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.243 0.757 37 H 0.170 0.830 38 H 0.163 0.837 39 H 0.149 0.851 40 H 0.146 0.854 41 H 0.149 0.851 42 H 0.157 0.843 43 H 0.223 0.777 44 H 0.112 0.888 45 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 3.247 -19.778 15.802 25.523 hybrid contribution 0.369 0.726 0.508 0.960 sum 3.616 -19.053 16.310 25.340 Atomic orbital electron populations 1.70026 1.05264 1.25690 1.53630 1.25088 0.95319 0.98547 1.00674 0.86288 0.79142 0.83466 0.77834 1.21279 1.21524 1.20436 1.19187 0.92670 0.84563 1.42024 0.91409 1.44010 1.35713 1.01949 1.49642 1.20940 0.98287 0.86284 0.92635 1.22430 0.96616 1.00314 0.98646 1.21093 0.98841 0.86947 0.87511 0.89199 1.45981 1.65995 1.05645 1.16251 1.17881 0.78339 0.82611 0.86413 1.90781 1.46964 1.78407 1.24914 1.21520 0.96451 0.92997 0.91893 1.21794 0.98901 0.92488 1.01282 1.21465 0.95710 1.00525 0.91329 1.18989 1.00617 0.94330 0.95300 1.20996 0.99255 0.99428 0.92298 1.20997 0.98613 0.95551 0.97645 1.20938 0.99262 0.93275 0.99141 1.20921 0.97828 1.00948 0.90495 1.18879 0.98709 0.88964 0.93435 1.67864 1.09936 1.38532 0.99042 1.22976 0.87211 0.95280 0.93388 0.92937 1.86421 1.48311 1.36824 1.66110 1.21422 0.89844 0.98088 0.88475 0.93487 0.92048 0.95755 0.91896 0.91744 0.75667 0.83046 0.83677 0.85066 0.85395 0.85078 0.84305 0.77738 0.88803 0.95169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.58 11.20 55.49 0.62 -24.96 16 2 C 0.00 0.07 4.92 -17.43 -0.09 -0.02 16 3 Si 0.90 21.17 29.59 -169.99 -5.03 16.14 16 4 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.26 -6.83 9.58 -15.06 -0.14 -6.97 16 8 H 0.07 1.78 7.88 -52.49 -0.41 1.37 16 9 N -0.59 -14.50 2.99 -172.32 -0.52 -15.02 16 10 C 0.15 3.09 6.52 -3.71 -0.02 3.06 16 11 C -0.14 -2.58 5.65 -26.62 -0.15 -2.73 16 12 C 0.16 2.99 2.12 -67.89 -0.14 2.85 16 13 H 0.09 1.89 7.58 -51.93 -0.39 1.50 16 14 N -0.69 -11.49 4.90 -54.58 -0.27 -11.76 16 15 C 0.56 9.48 7.78 -12.13 -0.09 9.39 16 16 O -0.53 -10.27 15.94 5.36 0.09 -10.18 16 17 C 0.13 1.79 6.75 -82.95 -0.56 1.23 16 18 C -0.12 -1.45 9.54 -39.44 -0.38 -1.83 16 19 C -0.06 -0.59 9.88 -39.25 -0.39 -0.98 16 20 C -0.09 -0.90 5.75 -106.72 -0.61 -1.51 16 21 C -0.10 -0.73 9.77 -39.52 -0.39 -1.12 16 22 C -0.11 -0.70 9.95 -39.89 -0.40 -1.10 16 23 C -0.11 -0.75 9.94 -39.94 -0.40 -1.15 16 24 C -0.08 -0.79 9.99 -39.41 -0.39 -1.18 16 25 C 0.12 1.45 6.61 -84.85 -0.56 0.89 16 26 N -0.44 -6.04 9.47 -7.54 -0.07 -6.11 16 27 C 0.07 1.39 3.14 -26.61 -0.08 1.30 16 28 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 29 O -0.57 -10.15 13.16 -35.23 -0.46 -10.61 16 30 C 0.15 3.46 4.93 -3.70 -0.02 3.45 16 31 H 0.26 6.99 8.31 -40.82 -0.34 6.66 16 32 H 0.06 1.25 7.93 -51.93 -0.41 0.84 16 33 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 36 H 0.41 6.31 7.91 -40.82 -0.32 5.99 16 37 H 0.15 1.65 7.60 -52.49 -0.40 1.25 16 38 H 0.15 0.82 8.06 -52.49 -0.42 0.40 16 39 H 0.13 0.60 8.06 -52.48 -0.42 0.18 16 40 H 0.13 0.48 8.06 -52.48 -0.42 0.05 16 41 H 0.13 0.59 8.06 -52.49 -0.42 0.17 16 42 H 0.14 1.17 8.06 -52.49 -0.42 0.75 16 43 H 0.38 5.34 9.08 45.56 0.41 5.75 16 44 H 0.09 2.38 6.06 -51.93 -0.31 2.06 16 45 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 LS Contribution 374.73 15.07 5.65 5.65 Total: -1.00 -32.56 374.73 -10.01 -42.58 By element: Atomic # 1 Polarization: 15.90 SS G_CDS: -5.20 Total: 10.69 kcal Atomic # 6 Polarization: 8.39 SS G_CDS: -4.82 Total: 3.58 kcal Atomic # 7 Polarization: -57.61 SS G_CDS: -0.23 Total: -57.84 kcal Atomic # 8 Polarization: -20.41 SS G_CDS: -0.38 Total: -20.79 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.03 Total: 16.14 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -32.56 -10.01 -42.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090751565.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.051 kcal (2) G-P(sol) polarization free energy of solvation -32.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds