Wall clock time and date at job start Sat Apr 11 2020 06:20:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86796 * 120.00335 * 2 1 4 4 H 1.48504 * 109.47136 * 240.00177 * 3 2 1 5 5 H 1.48502 * 109.47025 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47146 * 120.00039 * 3 2 1 7 7 C 1.38810 * 119.99637 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99912 * 197.36225 * 7 2 1 9 9 N 1.36936 * 120.00289 * 17.35219 * 7 2 1 10 10 C 1.46926 * 120.63480 * 207.66511 * 9 7 2 11 11 C 1.53186 * 108.77976 * 233.63520 * 10 9 7 12 12 C 1.53038 * 109.31552 * 305.36831 * 11 10 9 13 13 H 1.08998 * 109.45239 * 181.38075 * 12 11 10 14 14 N 1.46505 * 109.45572 * 301.34431 * 12 11 10 15 15 C 1.34782 * 119.99767 * 275.06248 * 14 12 11 16 16 O 1.21494 * 120.00108 * 0.28340 * 15 14 12 17 17 C 1.48273 * 119.99494 * 179.97438 * 15 14 12 18 18 C 1.40281 * 119.23371 * 179.73480 * 17 15 14 19 19 C 1.36505 * 119.81212 * 179.70000 * 18 17 15 20 20 C 1.40758 * 118.24288 * 0.58026 * 19 18 17 21 21 C 1.40422 * 121.26966 * 179.65929 * 20 19 18 22 22 C 1.36134 * 119.64568 * 180.02562 * 21 20 19 23 23 C 1.39429 * 120.91505 * 359.97438 * 22 21 20 24 24 C 1.35997 * 121.08833 * 359.97438 * 23 22 21 25 25 C 1.40819 * 119.73717 * 0.03785 * 24 23 22 26 26 N 1.31875 * 119.24544 * 0.02562 * 17 15 14 27 27 C 1.53031 * 109.53918 * 61.36087 * 12 11 10 28 28 H 1.09007 * 109.50023 * 58.62188 * 27 12 11 29 29 O 1.42900 * 109.49939 * 178.68428 * 27 12 11 30 30 C 1.46924 * 120.63063 * 27.69876 * 9 7 2 31 31 H 0.97001 * 119.99893 * 0.02562 * 1 2 3 32 32 H 1.09005 * 109.58858 * 353.42892 * 10 9 7 33 33 H 1.09006 * 109.58465 * 113.84433 * 10 9 7 34 34 H 1.09005 * 109.49516 * 185.41206 * 11 10 9 35 35 H 1.09003 * 109.49824 * 65.31805 * 11 10 9 36 36 H 0.96996 * 120.00400 * 95.06984 * 14 12 11 37 37 H 1.07998 * 120.09490 * 359.97438 * 18 17 15 38 38 H 1.07999 * 120.88138 * 180.23870 * 19 18 17 39 39 H 1.07994 * 120.17724 * 0.02562 * 21 20 19 40 40 H 1.07999 * 119.53789 * 180.02562 * 22 21 20 41 41 H 1.08006 * 119.45759 * 180.02562 * 23 22 21 42 42 H 1.08003 * 120.13437 * 180.02562 * 24 23 22 43 43 H 0.96709 * 114.00192 * 180.02562 * 29 27 12 44 44 H 1.09008 * 109.58379 * 6.57584 * 30 9 7 45 45 H 1.08996 * 109.70537 * 246.22225 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0533 -1.2237 0.2786 9 7 1.3722 -2.3609 -0.3547 10 6 1.8194 -3.6549 0.1786 11 6 2.0750 -4.6091 -0.9923 12 6 0.8196 -4.6885 -1.8639 13 1 0.9906 -5.3858 -2.6840 14 7 -0.3083 -5.1552 -1.0536 15 6 -0.5063 -6.4760 -0.8716 16 8 0.2535 -7.2792 -1.3752 17 6 -1.6475 -6.9482 -0.0511 18 6 -1.8418 -8.3265 0.1232 19 6 -2.8850 -8.7743 0.8813 20 6 -3.7463 -7.8219 1.4580 21 6 -4.8431 -8.2120 2.2432 22 6 -5.6551 -7.2629 2.7846 23 6 -5.4131 -5.9065 2.5710 24 6 -4.3602 -5.4913 1.8171 25 6 -3.4968 -6.4419 1.2393 26 7 -2.4596 -6.0632 0.4931 27 6 0.5014 -3.3030 -2.4305 28 1 1.3498 -2.9447 -3.0136 29 8 -0.6531 -3.3841 -3.2687 30 6 0.2279 -2.3340 -1.2759 31 1 -0.4850 0.8401 -0.0004 32 1 2.7400 -3.5179 0.7460 33 1 1.0470 -4.0698 0.8262 34 1 2.3144 -5.6006 -0.6079 35 1 2.9088 -4.2383 -1.5884 36 1 -0.9126 -4.5139 -0.6483 37 1 -1.1655 -9.0314 -0.3374 38 1 -3.0485 -9.8314 1.0301 39 1 -5.0414 -9.2593 2.4168 40 1 -6.4979 -7.5649 3.3887 41 1 -6.0723 -5.1735 3.0122 42 1 -4.1869 -4.4366 1.6620 43 1 -0.9128 -2.5402 -3.6633 44 1 0.0984 -1.3253 -1.6683 45 1 -0.6757 -2.6397 -0.7486 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090751568.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:38 Heat of formation + Delta-G solvation = -1.652389 kcal Electronic energy + Delta-G solvation = -29717.111499 eV Core-core repulsion = 25700.127502 eV Total energy + Delta-G solvation = -4016.983997 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 2.36 seconds Orbital eigenvalues (eV) -41.09195 -39.67522 -37.98086 -36.84793 -35.25793 -34.20318 -33.63591 -31.98108 -30.86026 -30.23580 -29.46262 -28.80682 -25.67323 -24.93292 -23.80764 -22.37619 -22.26846 -21.82211 -21.04511 -18.71129 -18.41738 -17.87747 -17.33693 -16.88701 -16.52483 -15.56039 -15.36754 -15.11981 -14.91607 -14.67653 -14.54584 -14.18698 -14.12700 -13.81632 -13.66159 -13.37927 -13.28914 -13.26597 -12.70030 -12.26453 -11.85381 -11.83225 -11.80145 -11.68718 -11.63093 -11.06514 -11.00099 -10.80517 -10.76518 -10.44147 -10.20588 -10.15319 -9.97532 -9.63818 -9.44837 -9.30651 -8.97550 -8.65294 -8.52057 -8.44359 -6.75865 -5.86496 -3.29718 0.07782 0.53267 1.79076 2.39827 3.30484 3.33566 3.34948 3.40284 3.41524 4.01982 4.04283 4.36269 4.42015 4.57527 4.61668 4.63539 4.78036 4.95000 5.00348 5.17896 5.27553 5.28196 5.42992 5.46221 5.59212 5.71171 5.75063 5.82125 5.86058 5.88522 5.95707 6.06489 6.13905 6.20940 6.27411 6.31080 6.44351 6.46976 6.61955 6.72844 6.84236 6.96020 7.09686 7.45282 7.56646 7.72344 7.95411 8.12806 8.36536 8.48034 9.11691 9.74698 10.30871 11.21472 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.012684 B = 0.003287 C = 0.002841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2206.912176 B = 8515.694304 C = 9855.042270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.004 3.996 3 Si 0.903 3.097 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.282 1.282 7 C -0.256 4.256 8 H 0.068 0.932 9 N -0.587 5.587 10 C 0.144 3.856 11 C -0.145 4.145 12 C 0.162 3.838 13 H 0.081 0.919 14 N -0.679 5.679 15 C 0.565 3.435 16 O -0.544 6.544 17 C 0.123 3.877 18 C -0.124 4.124 19 C -0.067 4.067 20 C -0.090 4.090 21 C -0.104 4.104 22 C -0.108 4.108 23 C -0.108 4.108 24 C -0.079 4.079 25 C 0.124 3.876 26 N -0.435 5.435 27 C 0.067 3.933 28 H 0.063 0.937 29 O -0.572 6.572 30 C 0.145 3.855 31 H 0.255 0.745 32 H 0.057 0.943 33 H 0.021 0.979 34 H 0.065 0.935 35 H 0.072 0.928 36 H 0.416 0.584 37 H 0.150 0.850 38 H 0.144 0.856 39 H 0.130 0.870 40 H 0.127 0.873 41 H 0.132 0.868 42 H 0.142 0.858 43 H 0.376 0.624 44 H 0.093 0.907 45 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.101 -14.944 2.209 18.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.195 4.195 3 Si 0.733 3.267 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.208 1.208 7 C -0.385 4.385 8 H 0.085 0.915 9 N -0.311 5.311 10 C 0.018 3.982 11 C -0.185 4.185 12 C 0.058 3.942 13 H 0.099 0.901 14 N -0.330 5.330 15 C 0.349 3.651 16 O -0.422 6.422 17 C -0.031 4.031 18 C -0.145 4.145 19 C -0.093 4.093 20 C -0.092 4.092 21 C -0.123 4.123 22 C -0.126 4.126 23 C -0.128 4.128 24 C -0.098 4.098 25 C 0.001 3.999 26 N -0.147 5.147 27 C 0.006 3.994 28 H 0.081 0.919 29 O -0.377 6.377 30 C 0.018 3.982 31 H 0.065 0.935 32 H 0.075 0.925 33 H 0.039 0.961 34 H 0.084 0.916 35 H 0.090 0.910 36 H 0.254 0.746 37 H 0.168 0.832 38 H 0.162 0.838 39 H 0.148 0.852 40 H 0.145 0.855 41 H 0.149 0.851 42 H 0.160 0.840 43 H 0.223 0.777 44 H 0.111 0.889 45 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -9.534 -15.013 1.929 17.889 hybrid contribution -0.076 0.940 0.239 0.972 sum -9.610 -14.074 2.168 17.179 Atomic orbital electron populations 1.70020 1.05217 1.25738 1.53557 1.25046 0.95306 0.98461 1.00700 0.86356 0.78930 0.83211 0.78197 1.21006 1.21614 1.20831 1.19164 0.92833 0.84701 1.41817 0.91460 1.43945 1.35649 1.01689 1.49829 1.20928 0.97935 0.86445 0.92878 1.22412 0.96388 1.00390 0.99281 1.20911 0.85809 0.94719 0.92791 0.90126 1.45897 1.30078 1.06494 1.50502 1.17864 0.83572 0.83237 0.80435 1.90735 1.46437 1.54629 1.50387 1.21470 0.94747 0.90630 0.96276 1.21756 0.98488 0.95848 0.98385 1.21428 0.93221 0.99753 0.94860 1.18989 0.97004 0.94030 0.99163 1.20964 0.94116 0.99992 0.97242 1.20990 0.99398 0.93041 0.99206 1.20940 0.97525 0.96121 0.98236 1.21004 0.93151 0.99923 0.95675 1.18890 0.93578 0.91205 0.96232 1.67902 1.02586 1.37772 1.06415 1.22932 0.87786 0.95675 0.93011 0.91907 1.86421 1.48248 1.36628 1.66384 1.21404 0.89590 0.98593 0.88572 0.93496 0.92452 0.96129 0.91644 0.90951 0.74569 0.83208 0.83806 0.85176 0.85471 0.85050 0.84017 0.77732 0.88915 0.95522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.07 11.19 55.49 0.62 -24.45 16 2 C 0.00 0.10 4.91 -17.43 -0.09 0.01 16 3 Si 0.90 21.05 29.59 -169.99 -5.03 16.02 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.26 -6.78 9.58 -15.06 -0.14 -6.93 16 8 H 0.07 1.76 7.89 -52.48 -0.41 1.34 16 9 N -0.59 -14.15 2.99 -172.32 -0.52 -14.66 16 10 C 0.14 3.04 6.26 -3.71 -0.02 3.01 16 11 C -0.14 -2.65 5.77 -26.62 -0.15 -2.80 16 12 C 0.16 3.02 2.46 -67.89 -0.17 2.85 16 13 H 0.08 1.53 7.58 -51.93 -0.39 1.13 16 14 N -0.68 -12.57 4.14 -54.58 -0.23 -12.79 16 15 C 0.57 10.20 7.78 -12.13 -0.09 10.11 16 16 O -0.54 -10.59 15.95 5.37 0.09 -10.51 16 17 C 0.12 1.96 6.75 -82.95 -0.56 1.40 16 18 C -0.12 -1.60 9.54 -39.44 -0.38 -1.98 16 19 C -0.07 -0.70 9.88 -39.26 -0.39 -1.09 16 20 C -0.09 -1.05 5.75 -106.71 -0.61 -1.66 16 21 C -0.10 -0.92 9.77 -39.52 -0.39 -1.31 16 22 C -0.11 -0.88 9.96 -39.89 -0.40 -1.28 16 23 C -0.11 -1.01 9.94 -39.94 -0.40 -1.40 16 24 C -0.08 -0.96 9.99 -39.41 -0.39 -1.35 16 25 C 0.12 1.75 6.61 -84.85 -0.56 1.19 16 26 N -0.44 -7.06 9.47 -7.54 -0.07 -7.13 16 27 C 0.07 1.27 3.36 -26.62 -0.09 1.18 16 28 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 29 O -0.57 -10.12 13.21 -35.23 -0.47 -10.58 16 30 C 0.15 3.27 4.64 -3.71 -0.02 3.26 16 31 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 32 H 0.06 1.18 7.93 -51.93 -0.41 0.77 16 33 H 0.02 0.45 7.74 -51.93 -0.40 0.05 16 34 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 35 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 36 H 0.42 8.08 6.17 -40.82 -0.25 7.83 16 37 H 0.15 1.76 7.60 -52.49 -0.40 1.36 16 38 H 0.14 0.98 8.06 -52.49 -0.42 0.55 16 39 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 40 H 0.13 0.68 8.06 -52.49 -0.42 0.25 16 41 H 0.13 0.90 8.06 -52.48 -0.42 0.47 16 42 H 0.14 1.71 8.06 -52.48 -0.42 1.29 16 43 H 0.38 5.32 9.09 45.56 0.41 5.73 16 44 H 0.09 2.31 6.04 -51.92 -0.31 2.00 16 45 H 0.03 0.65 6.64 -51.93 -0.35 0.30 16 LS Contribution 370.49 15.07 5.58 5.58 Total: -1.00 -31.76 370.49 -9.90 -41.66 By element: Atomic # 1 Polarization: 18.69 SS G_CDS: -5.03 Total: 13.65 kcal Atomic # 6 Polarization: 8.06 SS G_CDS: -4.85 Total: 3.21 kcal Atomic # 7 Polarization: -58.85 SS G_CDS: -0.19 Total: -59.04 kcal Atomic # 8 Polarization: -20.71 SS G_CDS: -0.38 Total: -21.09 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.03 Total: 16.02 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -31.76 -9.90 -41.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090751568.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.010 kcal (2) G-P(sol) polarization free energy of solvation -31.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.36 seconds