Wall clock time and date at job start Sat Apr 11 2020 06:17:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86799 * 120.00042 * 2 1 4 4 H 1.48500 * 109.47117 * 240.00560 * 3 2 1 5 5 H 1.48503 * 109.47001 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47267 * 119.99981 * 3 2 1 7 7 C 1.38809 * 120.00034 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00334 * 189.09450 * 7 2 1 9 9 N 1.36940 * 120.00046 * 9.09844 * 7 2 1 10 10 C 1.48144 * 127.84030 * 15.58876 * 9 7 2 11 11 C 1.54392 * 104.61644 * 140.39638 * 10 9 7 12 12 H 1.09000 * 118.18408 * 244.20291 * 11 10 9 13 13 C 1.52996 * 118.11692 * 87.19635 * 11 10 9 14 14 H 1.08992 * 117.45017 * 16.06233 * 13 11 10 15 15 C 1.53004 * 117.44127 * 160.80836 * 13 11 10 16 16 N 1.46498 * 109.47347 * 184.99466 * 15 13 11 17 17 C 1.34779 * 120.00156 * 179.97438 * 16 15 13 18 18 O 1.21281 * 119.99678 * 0.02562 * 17 16 15 19 19 C 1.50693 * 119.99904 * 180.02562 * 17 16 15 20 20 C 1.50703 * 109.46906 * 180.02562 * 19 17 16 21 21 N 1.29742 * 126.29263 * 269.99403 * 20 19 17 22 22 O 1.41353 * 109.74003 * 180.02562 * 21 20 19 23 23 C 1.34820 * 109.33353 * 359.74143 * 22 21 20 24 24 C 1.38975 * 133.45003 * 179.52201 * 23 22 21 25 25 C 1.37803 * 119.79627 * 180.45452 * 24 23 22 26 26 C 1.38782 * 120.59884 * 0.23454 * 25 24 23 27 27 C 1.36624 * 120.51708 * 0.03536 * 26 25 24 28 28 C 1.39695 * 119.78877 * 359.97438 * 27 26 25 29 29 C 1.53002 * 60.55881 * 268.45710 * 13 11 10 30 30 H 1.08999 * 119.54450 * 248.24075 * 29 13 11 31 31 C 1.48144 * 127.83853 * 195.57288 * 9 7 2 32 32 H 0.97000 * 120.00287 * 0.02562 * 1 2 3 33 33 H 1.09008 * 110.40388 * 21.61666 * 10 9 7 34 34 H 1.08996 * 110.41092 * 259.18769 * 10 9 7 35 35 H 1.09009 * 109.46779 * 64.99749 * 15 13 11 36 36 H 1.09001 * 109.47236 * 304.99796 * 15 13 11 37 37 H 0.96995 * 119.99996 * 0.02562 * 16 15 13 38 38 H 1.09001 * 109.47717 * 60.00114 * 19 17 16 39 39 H 1.08995 * 109.47288 * 299.99724 * 19 17 16 40 40 H 1.08007 * 120.10537 * 0.72689 * 24 23 22 41 41 H 1.08002 * 119.69949 * 180.25075 * 25 24 23 42 42 H 1.07999 * 119.74681 * 180.02562 * 26 25 24 43 43 H 1.08000 * 120.10802 * 179.97438 * 27 26 25 44 44 H 1.09004 * 110.41163 * 100.81265 * 31 9 7 45 45 H 1.09008 * 110.50827 * 338.43772 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2126 5 1 1.2852 2.7465 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0801 -1.2081 0.1473 9 7 1.3385 -2.3805 -0.1886 10 6 -0.0340 -2.5706 -0.7127 11 6 0.0643 -3.8159 -1.6199 12 1 -0.1225 -3.6918 -2.6866 13 6 -0.1180 -5.1924 -0.9773 14 1 -0.5673 -5.2280 0.0151 15 6 -0.4668 -6.3612 -1.9010 16 7 -0.7170 -7.5606 -1.0978 17 6 -1.0443 -8.7200 -1.7020 18 8 -1.1313 -8.7705 -2.9106 19 6 -1.3022 -9.9536 -0.8757 20 6 -1.6457 -11.1048 -1.7856 21 7 -2.8334 -11.4383 -2.1873 22 8 -2.7522 -12.5712 -3.0287 23 6 -1.4625 -12.9440 -3.1522 24 6 -0.8262 -13.9723 -3.8371 25 6 0.5436 -14.1018 -3.7597 26 6 1.2949 -13.2168 -2.9992 27 6 0.6881 -12.2025 -2.3140 28 6 -0.6994 -12.0538 -2.3790 29 6 1.2865 -4.5967 -1.0935 30 1 2.0102 -5.0541 -1.7681 31 6 1.8196 -3.7546 0.0856 32 1 -0.4850 0.8400 -0.0004 33 1 -0.3430 -1.7010 -1.2930 34 1 -0.7317 -2.7502 0.1052 35 1 0.3641 -6.5467 -2.5818 36 1 -1.3598 -6.1160 -2.4759 37 1 -0.6478 -7.5200 -0.1312 38 1 -2.1329 -9.7678 -0.1949 39 1 -0.4093 -10.1991 -0.3009 40 1 -1.4030 -14.6652 -4.4318 41 1 1.0368 -14.8991 -4.2958 42 1 2.3677 -13.3308 -2.9485 43 1 1.2792 -11.5178 -1.7239 44 1 1.4114 -4.1192 1.0283 45 1 2.9091 -3.7802 0.1089 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330309621.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:05 Heat of formation + Delta-G solvation = 89.131550 kcal Electronic energy + Delta-G solvation = -27654.510779 eV Core-core repulsion = 23641.463469 eV Total energy + Delta-G solvation = -4013.047310 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.14182 -39.96458 -38.79507 -38.10401 -35.24866 -34.78924 -33.41641 -31.24818 -30.92955 -30.46684 -29.95937 -27.24663 -27.08104 -24.86159 -23.68232 -23.08168 -21.70558 -21.19939 -20.53466 -19.75088 -19.30295 -17.95865 -17.63268 -17.42815 -16.84419 -16.12628 -16.10595 -15.93397 -15.71912 -14.85715 -14.55418 -14.39078 -14.34326 -13.96926 -13.73599 -13.68065 -13.30320 -12.92788 -12.73269 -12.69503 -12.62789 -12.53309 -11.89820 -11.68805 -11.56055 -11.44687 -11.29454 -11.15489 -10.84641 -10.70645 -10.37077 -10.21807 -10.18873 -9.77550 -9.50929 -9.35014 -9.20028 -9.04282 -9.01332 -8.67301 -6.90693 -5.83115 -3.17717 0.22714 0.86964 1.59953 2.12720 2.33634 2.91736 3.21754 3.36407 3.41303 3.42372 3.56902 3.83463 4.06885 4.14418 4.40700 4.44404 4.49354 4.63725 4.72213 4.75508 4.83284 4.88002 4.99558 5.23305 5.30825 5.33890 5.40009 5.43981 5.44799 5.67311 5.73412 5.78577 5.82437 5.85205 5.91148 5.91933 6.18155 6.19833 6.21533 6.49714 6.60652 6.65326 6.86574 6.87554 7.24924 7.31741 7.49189 7.68070 7.94427 8.17507 9.07476 9.70392 10.47031 11.31092 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.030880 B = 0.001679 C = 0.001628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.520123 B =16675.409349 C =17194.378636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.005 4.005 3 Si 0.913 3.087 4 H -0.284 1.284 5 H -0.289 1.289 6 H -0.283 1.283 7 C -0.229 4.229 8 H 0.076 0.924 9 N -0.594 5.594 10 C 0.183 3.817 11 C -0.161 4.161 12 H 0.103 0.897 13 C -0.151 4.151 14 H 0.104 0.896 15 C 0.155 3.845 16 N -0.719 5.719 17 C 0.517 3.483 18 O -0.531 6.531 19 C -0.076 4.076 20 C 0.154 3.846 21 N -0.274 5.274 22 O -0.090 6.090 23 C 0.085 3.915 24 C -0.127 4.127 25 C -0.062 4.062 26 C -0.150 4.150 27 C -0.036 4.036 28 C -0.185 4.185 29 C -0.171 4.171 30 H 0.103 0.897 31 C 0.154 3.846 32 H 0.255 0.745 33 H 0.090 0.910 34 H 0.024 0.976 35 H 0.069 0.931 36 H 0.072 0.928 37 H 0.404 0.596 38 H 0.125 0.875 39 H 0.126 0.874 40 H 0.139 0.861 41 H 0.140 0.860 42 H 0.135 0.865 43 H 0.133 0.867 44 H 0.024 0.976 45 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.569 -28.464 -2.487 28.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.202 4.202 3 Si 0.743 3.257 4 H -0.211 1.211 5 H -0.215 1.215 6 H -0.210 1.210 7 C -0.357 4.357 8 H 0.094 0.906 9 N -0.318 5.318 10 C 0.058 3.942 11 C -0.182 4.182 12 H 0.121 0.879 13 C -0.170 4.170 14 H 0.122 0.878 15 C 0.032 3.968 16 N -0.370 5.370 17 C 0.300 3.700 18 O -0.407 6.407 19 C -0.117 4.117 20 C -0.028 4.028 21 N -0.016 5.016 22 O -0.101 6.101 23 C 0.031 3.969 24 C -0.147 4.147 25 C -0.081 4.081 26 C -0.168 4.168 27 C -0.056 4.056 28 C -0.189 4.189 29 C -0.191 4.191 30 H 0.121 0.879 31 C 0.028 3.972 32 H 0.065 0.935 33 H 0.108 0.892 34 H 0.042 0.958 35 H 0.087 0.913 36 H 0.090 0.910 37 H 0.239 0.761 38 H 0.143 0.857 39 H 0.144 0.856 40 H 0.157 0.843 41 H 0.158 0.842 42 H 0.153 0.847 43 H 0.151 0.849 44 H 0.041 0.959 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -0.880 -27.978 -3.357 28.192 hybrid contribution 1.172 0.749 0.379 1.441 sum 0.291 -27.229 -2.977 27.393 Atomic orbital electron populations 1.69883 1.05064 1.25601 1.55615 1.24900 0.95650 0.98003 1.01679 0.86188 0.78558 0.82916 0.78018 1.21065 1.21516 1.20973 1.18947 0.90780 0.82387 1.43590 0.90627 1.45195 1.13340 0.99980 1.73242 1.21070 0.86847 0.92750 0.93548 1.24246 1.02083 0.91686 1.00144 0.87873 1.22522 1.00406 0.93782 1.00247 0.87827 1.20918 1.01261 0.81935 0.92715 1.45951 1.70538 1.09498 1.11063 1.20020 0.77395 0.84095 0.88446 1.90786 1.50749 1.84982 1.14203 1.20254 1.06061 0.88824 0.96564 1.23708 0.90470 0.94390 0.94233 1.79874 1.18593 0.97257 1.05880 1.89160 1.22127 1.39823 1.58982 1.20290 0.84952 0.95655 0.96029 1.20072 0.94374 0.97729 1.02477 1.21163 0.92375 0.98225 0.96337 1.20822 1.00720 0.96024 0.99241 1.20465 0.91434 0.96789 0.96936 1.20615 0.95949 0.97970 1.04317 1.24006 0.89775 1.02619 1.02722 0.87926 1.21132 0.97139 0.86040 0.92903 0.93464 0.89161 0.95836 0.91257 0.90963 0.76091 0.85732 0.85558 0.84331 0.84236 0.84689 0.84888 0.95868 0.93199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.45 10.87 55.49 0.60 -25.84 16 2 C -0.01 -0.14 5.40 -17.43 -0.09 -0.24 16 3 Si 0.91 21.65 29.56 -169.99 -5.03 16.63 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.23 -6.27 10.35 -15.06 -0.16 -6.43 16 8 H 0.08 2.00 7.85 -52.49 -0.41 1.58 16 9 N -0.59 -14.86 3.38 -168.86 -0.57 -15.43 16 10 C 0.18 4.28 5.70 -2.41 -0.01 4.27 16 11 C -0.16 -2.92 6.85 -89.22 -0.61 -3.53 16 12 H 0.10 1.79 8.14 -51.93 -0.42 1.37 16 13 C -0.15 -2.13 5.39 -90.62 -0.49 -2.62 16 14 H 0.10 1.44 8.04 -51.93 -0.42 1.02 16 15 C 0.15 1.93 5.95 -4.04 -0.02 1.91 16 16 N -0.72 -7.06 5.56 -60.29 -0.33 -7.39 16 17 C 0.52 5.74 7.82 -10.99 -0.09 5.65 16 18 O -0.53 -8.46 16.03 5.56 0.09 -8.37 16 19 C -0.08 -0.57 6.30 -29.04 -0.18 -0.76 16 20 C 0.15 1.71 5.95 -80.12 -0.48 1.23 16 21 N -0.27 -3.70 12.81 34.91 0.45 -3.25 16 22 O -0.09 -1.21 12.06 7.69 0.09 -1.12 16 23 C 0.08 0.95 7.48 -38.48 -0.29 0.66 16 24 C -0.13 -1.01 10.07 -39.47 -0.40 -1.41 16 25 C -0.06 -0.37 10.02 -39.54 -0.40 -0.77 16 26 C -0.15 -0.94 9.97 -39.96 -0.40 -1.34 16 27 C -0.04 -0.28 10.05 -39.62 -0.40 -0.68 16 28 C -0.18 -1.95 6.33 -105.16 -0.67 -2.61 16 29 C -0.17 -2.85 6.74 -89.22 -0.60 -3.45 16 30 H 0.10 1.58 8.12 -51.93 -0.42 1.16 16 31 C 0.15 3.08 7.04 -2.41 -0.02 3.06 16 32 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 33 H 0.09 2.38 6.51 -51.92 -0.34 2.04 16 34 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.07 0.91 7.94 -51.92 -0.41 0.50 16 36 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.40 2.80 8.40 -40.82 -0.34 2.45 16 38 H 0.12 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.13 0.49 8.14 -51.93 -0.42 0.06 16 40 H 0.14 0.80 8.06 -52.48 -0.42 0.38 16 41 H 0.14 0.41 8.06 -52.49 -0.42 -0.02 16 42 H 0.14 0.50 8.06 -52.49 -0.42 0.08 16 43 H 0.13 0.75 8.06 -52.49 -0.42 0.32 16 44 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.05 0.96 8.14 -51.92 -0.42 0.54 16 LS Contribution 383.42 15.07 5.78 5.78 Total: -1.00 -35.38 383.42 -10.35 -45.73 By element: Atomic # 1 Polarization: 6.46 SS G_CDS: -6.13 Total: 0.33 kcal Atomic # 6 Polarization: -1.76 SS G_CDS: -5.30 Total: -7.06 kcal Atomic # 7 Polarization: -52.06 SS G_CDS: 0.14 Total: -51.91 kcal Atomic # 8 Polarization: -9.67 SS G_CDS: 0.18 Total: -9.49 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.03 Total: 16.63 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -35.38 -10.35 -45.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330309621.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.857 kcal (2) G-P(sol) polarization free energy of solvation -35.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.726 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds