Wall clock time and date at job start Sat Apr 11 2020 06:17:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86799 * 120.00042 * 2 1 4 4 H 1.48500 * 109.47117 * 240.00560 * 3 2 1 5 5 H 1.48503 * 109.47001 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47267 * 119.99981 * 3 2 1 7 7 C 1.38809 * 120.00034 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00334 * 189.09450 * 7 2 1 9 9 N 1.36940 * 120.00046 * 9.09844 * 7 2 1 10 10 C 1.48144 * 127.84030 * 15.58876 * 9 7 2 11 11 C 1.54392 * 104.61644 * 140.39638 * 10 9 7 12 12 H 1.09000 * 118.18408 * 244.20291 * 11 10 9 13 13 C 1.52996 * 118.11692 * 87.19635 * 11 10 9 14 14 H 1.08992 * 117.45017 * 16.06233 * 13 11 10 15 15 C 1.53004 * 117.44127 * 160.80836 * 13 11 10 16 16 N 1.46498 * 109.47347 * 184.99466 * 15 13 11 17 17 C 1.34779 * 120.00156 * 179.97438 * 16 15 13 18 18 O 1.21281 * 119.99678 * 0.02562 * 17 16 15 19 19 C 1.50693 * 119.99904 * 180.02562 * 17 16 15 20 20 C 1.50703 * 109.46906 * 180.02562 * 19 17 16 21 21 N 1.29742 * 126.29263 * 269.99403 * 20 19 17 22 22 O 1.41353 * 109.74003 * 180.02562 * 21 20 19 23 23 C 1.34820 * 109.33353 * 359.74143 * 22 21 20 24 24 C 1.38975 * 133.45003 * 179.52201 * 23 22 21 25 25 C 1.37803 * 119.79627 * 180.45452 * 24 23 22 26 26 C 1.38782 * 120.59884 * 0.23454 * 25 24 23 27 27 C 1.36624 * 120.51708 * 0.03536 * 26 25 24 28 28 C 1.39695 * 119.78877 * 359.97438 * 27 26 25 29 29 C 1.53002 * 60.55881 * 268.45710 * 13 11 10 30 30 H 1.08999 * 119.54450 * 248.24075 * 29 13 11 31 31 C 1.48144 * 127.83853 * 195.57288 * 9 7 2 32 32 H 0.97000 * 120.00287 * 0.02562 * 1 2 3 33 33 H 1.09008 * 110.40388 * 21.61666 * 10 9 7 34 34 H 1.08996 * 110.41092 * 259.18769 * 10 9 7 35 35 H 1.09009 * 109.46779 * 64.99749 * 15 13 11 36 36 H 1.09001 * 109.47236 * 304.99796 * 15 13 11 37 37 H 0.96995 * 119.99996 * 0.02562 * 16 15 13 38 38 H 1.09001 * 109.47717 * 60.00114 * 19 17 16 39 39 H 1.08995 * 109.47288 * 299.99724 * 19 17 16 40 40 H 1.08007 * 120.10537 * 0.72689 * 24 23 22 41 41 H 1.08002 * 119.69949 * 180.25075 * 25 24 23 42 42 H 1.07999 * 119.74681 * 180.02562 * 26 25 24 43 43 H 1.08000 * 120.10802 * 179.97438 * 27 26 25 44 44 H 1.09004 * 110.41163 * 100.81265 * 31 9 7 45 45 H 1.09008 * 110.50827 * 338.43772 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2126 5 1 1.2852 2.7465 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0801 -1.2081 0.1473 9 7 1.3385 -2.3805 -0.1886 10 6 -0.0340 -2.5706 -0.7127 11 6 0.0643 -3.8159 -1.6199 12 1 -0.1225 -3.6918 -2.6866 13 6 -0.1180 -5.1924 -0.9773 14 1 -0.5673 -5.2280 0.0151 15 6 -0.4668 -6.3612 -1.9010 16 7 -0.7170 -7.5606 -1.0978 17 6 -1.0443 -8.7200 -1.7020 18 8 -1.1313 -8.7705 -2.9106 19 6 -1.3022 -9.9536 -0.8757 20 6 -1.6457 -11.1048 -1.7856 21 7 -2.8334 -11.4383 -2.1873 22 8 -2.7522 -12.5712 -3.0287 23 6 -1.4625 -12.9440 -3.1522 24 6 -0.8262 -13.9723 -3.8371 25 6 0.5436 -14.1018 -3.7597 26 6 1.2949 -13.2168 -2.9992 27 6 0.6881 -12.2025 -2.3140 28 6 -0.6994 -12.0538 -2.3790 29 6 1.2865 -4.5967 -1.0935 30 1 2.0102 -5.0541 -1.7681 31 6 1.8196 -3.7546 0.0856 32 1 -0.4850 0.8400 -0.0004 33 1 -0.3430 -1.7010 -1.2930 34 1 -0.7317 -2.7502 0.1052 35 1 0.3641 -6.5467 -2.5818 36 1 -1.3598 -6.1160 -2.4759 37 1 -0.6478 -7.5200 -0.1312 38 1 -2.1329 -9.7678 -0.1949 39 1 -0.4093 -10.1991 -0.3009 40 1 -1.4030 -14.6652 -4.4318 41 1 1.0368 -14.8991 -4.2958 42 1 2.3677 -13.3308 -2.9485 43 1 1.2792 -11.5178 -1.7239 44 1 1.4114 -4.1192 1.0283 45 1 2.9091 -3.7802 0.1089 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330309621.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:04 Heat of formation + Delta-G solvation = 65.963510 kcal Electronic energy + Delta-G solvation = -27655.515421 eV Core-core repulsion = 23641.463469 eV Total energy + Delta-G solvation = -4014.051952 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.85162 -40.97478 -40.19039 -38.68968 -36.43195 -35.62676 -35.01646 -32.79025 -31.68117 -31.13585 -30.81821 -28.88944 -28.54095 -26.46784 -24.28510 -23.70650 -23.02927 -22.33346 -21.71038 -20.86822 -20.74230 -18.83967 -18.58192 -18.38584 -18.16671 -17.13199 -16.95195 -16.71780 -16.61604 -16.38023 -15.93437 -15.39801 -15.14641 -14.99773 -14.83359 -14.61098 -14.48733 -14.31932 -14.23453 -13.42991 -13.31306 -13.27072 -13.17242 -13.10981 -12.86765 -12.68284 -12.39190 -12.33574 -12.27254 -12.06917 -11.97896 -11.94519 -11.75533 -11.21137 -10.90045 -10.69194 -10.54304 -10.08951 -9.97124 -9.62472 -8.89530 -7.91257 -5.27213 -0.40717 0.27609 0.90136 1.39677 1.46415 1.49610 1.50794 1.55986 2.09181 2.48097 2.63706 2.74623 2.92627 3.17675 3.26870 3.56358 3.61780 3.69425 3.74045 3.86416 4.02935 4.09581 4.20889 4.23583 4.29442 4.30576 4.36426 4.44414 4.48417 4.57496 4.65683 4.74144 4.79103 4.92671 4.96020 5.05352 5.10753 5.19883 5.29051 5.36185 5.40545 5.43462 5.46096 5.54768 5.67481 5.70260 6.14680 6.19042 6.47704 7.01798 7.15575 7.69684 8.47566 9.22222 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.030880 B = 0.001679 C = 0.001628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.520123 B =16675.409349 C =17194.378636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.064 4.064 3 Si 0.979 3.021 4 H -0.278 1.278 5 H -0.295 1.295 6 H -0.273 1.273 7 C -0.241 4.241 8 H 0.081 0.919 9 N -0.621 5.621 10 C 0.189 3.811 11 C -0.182 4.182 12 H 0.109 0.891 13 C -0.106 4.106 14 H 0.114 0.886 15 C 0.164 3.836 16 N -0.704 5.704 17 C 0.520 3.480 18 O -0.584 6.584 19 C -0.069 4.069 20 C 0.154 3.846 21 N -0.318 5.318 22 O -0.122 6.122 23 C 0.049 3.951 24 C -0.141 4.141 25 C -0.051 4.051 26 C -0.147 4.147 27 C -0.043 4.043 28 C -0.208 4.208 29 C -0.157 4.157 30 H 0.125 0.875 31 C 0.149 3.851 32 H 0.249 0.751 33 H 0.050 0.950 34 H 0.004 0.996 35 H 0.069 0.931 36 H 0.063 0.937 37 H 0.422 0.578 38 H 0.149 0.851 39 H 0.172 0.828 40 H 0.152 0.848 41 H 0.176 0.824 42 H 0.168 0.832 43 H 0.158 0.842 44 H 0.031 0.969 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.247 -30.659 -1.907 30.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.257 4.257 3 Si 0.807 3.193 4 H -0.204 1.204 5 H -0.221 1.221 6 H -0.199 1.199 7 C -0.369 4.369 8 H 0.099 0.901 9 N -0.346 5.346 10 C 0.063 3.937 11 C -0.202 4.202 12 H 0.127 0.873 13 C -0.125 4.125 14 H 0.132 0.868 15 C 0.040 3.960 16 N -0.357 5.357 17 C 0.306 3.694 18 O -0.464 6.464 19 C -0.109 4.109 20 C -0.027 4.027 21 N -0.062 5.062 22 O -0.132 6.132 23 C -0.004 4.004 24 C -0.160 4.160 25 C -0.070 4.070 26 C -0.165 4.165 27 C -0.063 4.063 28 C -0.211 4.211 29 C -0.176 4.176 30 H 0.143 0.857 31 C 0.024 3.976 32 H 0.058 0.942 33 H 0.068 0.932 34 H 0.021 0.979 35 H 0.087 0.913 36 H 0.081 0.919 37 H 0.260 0.740 38 H 0.167 0.833 39 H 0.189 0.811 40 H 0.170 0.830 41 H 0.194 0.806 42 H 0.186 0.814 43 H 0.175 0.825 44 H 0.049 0.951 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 1.824 -30.221 -2.740 30.400 hybrid contribution 0.431 1.335 0.197 1.417 sum 2.256 -28.886 -2.543 29.085 Atomic orbital electron populations 1.70085 1.06500 1.25751 1.57193 1.25734 0.96488 1.01292 1.02227 0.85155 0.77217 0.78635 0.78337 1.20447 1.22110 1.19897 1.19347 0.91352 0.83727 1.42510 0.90117 1.45524 1.13858 1.01311 1.73875 1.20788 0.86073 0.93674 0.93143 1.23915 1.05063 0.91533 0.99715 0.87296 1.22401 0.97960 0.91742 1.00352 0.86802 1.20657 1.00867 0.82150 0.92361 1.45741 1.69831 1.08345 1.11815 1.20514 0.76045 0.84937 0.87949 1.90778 1.53078 1.85813 1.16714 1.20457 1.09020 0.85770 0.95690 1.24303 0.90051 0.94783 0.93541 1.79781 1.20503 0.98332 1.07613 1.89067 1.23853 1.40454 1.59812 1.20872 0.84442 0.97337 0.97760 1.20479 0.95567 0.97407 1.02546 1.21667 0.91430 0.98566 0.95344 1.21314 1.02379 0.94923 0.97834 1.20861 0.90370 0.97713 0.97358 1.20896 0.97177 0.98086 1.04973 1.23931 0.90480 1.02048 1.01184 0.85748 1.21307 0.97750 0.84128 0.94457 0.94185 0.93195 0.97853 0.91256 0.91886 0.73968 0.83323 0.81076 0.82998 0.80638 0.81433 0.82489 0.95135 0.92461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.62 10.87 21.65 0.24 -56.38 16 2 C -0.06 -3.59 5.40 84.86 0.46 -3.13 16 3 Si 0.98 45.09 29.56 68.60 2.03 47.12 16 4 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 5 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 6 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 7 C -0.24 -13.30 10.35 84.03 0.87 -12.43 16 8 H 0.08 4.24 7.85 -2.91 -0.02 4.22 16 9 N -0.62 -31.29 3.38 -688.14 -2.33 -33.61 16 10 C 0.19 9.05 5.70 86.54 0.49 9.54 16 11 C -0.18 -6.47 6.85 -9.88 -0.07 -6.54 16 12 H 0.11 3.75 8.14 -2.39 -0.02 3.73 16 13 C -0.11 -2.72 5.39 -10.79 -0.06 -2.78 16 14 H 0.11 2.80 8.04 -2.39 -0.02 2.78 16 15 C 0.16 3.66 5.95 86.38 0.51 4.17 16 16 N -0.70 -11.55 5.56 -463.05 -2.57 -14.13 16 17 C 0.52 10.36 7.82 87.65 0.69 11.05 16 18 O -0.58 -18.17 16.03 -3.03 -0.05 -18.22 16 19 C -0.07 -0.85 6.30 29.10 0.18 -0.67 16 20 C 0.15 3.34 5.95 45.04 0.27 3.60 16 21 N -0.32 -8.93 12.81 -43.47 -0.56 -9.49 16 22 O -0.12 -3.53 12.06 29.88 0.36 -3.17 16 23 C 0.05 1.12 7.48 22.99 0.17 1.29 16 24 C -0.14 -2.12 10.07 22.34 0.23 -1.90 16 25 C -0.05 -0.46 10.02 22.30 0.22 -0.24 16 26 C -0.15 -1.32 9.97 22.02 0.22 -1.10 16 27 C -0.04 -0.56 10.05 22.24 0.22 -0.34 16 28 C -0.21 -4.21 6.33 -20.21 -0.13 -4.34 16 29 C -0.16 -4.82 6.74 -9.89 -0.07 -4.89 16 30 H 0.12 3.36 8.12 -2.39 -0.02 3.34 16 31 C 0.15 5.70 7.04 86.53 0.61 6.31 16 32 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 33 H 0.05 2.77 6.51 -2.38 -0.02 2.75 16 34 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 35 H 0.07 1.63 7.94 -2.38 -0.02 1.61 16 36 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.42 4.03 8.40 -92.71 -0.78 3.25 16 38 H 0.15 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.17 0.52 8.14 -2.39 -0.02 0.50 16 40 H 0.15 1.68 8.06 -2.91 -0.02 1.66 16 41 H 0.18 0.26 8.06 -2.91 -0.02 0.24 16 42 H 0.17 0.40 8.06 -2.91 -0.02 0.38 16 43 H 0.16 1.14 8.06 -2.91 -0.02 1.12 16 44 H 0.03 1.14 8.14 -2.38 -0.02 1.12 16 45 H 0.06 2.09 8.14 -2.38 -0.02 2.07 16 Total: -1.00 -83.17 383.42 2.19 -80.98 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: 0.25 Total: 9.29 kcal Atomic # 6 Polarization: -7.21 SS G_CDS: 4.82 Total: -2.39 kcal Atomic # 7 Polarization: -108.39 SS G_CDS: -5.22 Total: -113.61 kcal Atomic # 8 Polarization: -21.70 SS G_CDS: 0.31 Total: -21.39 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.12 kcal Total: -83.17 2.19 -80.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330309621.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.944 kcal (2) G-P(sol) polarization free energy of solvation -83.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.981 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds