Wall clock time and date at job start Sat Apr 11 2020 06:17:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86803 * 119.99834 * 2 1 4 4 H 1.48499 * 109.46768 * 269.99612 * 3 2 1 5 5 H 1.48503 * 109.47161 * 29.99784 * 3 2 1 6 6 H 1.48503 * 109.47003 * 149.99886 * 3 2 1 7 7 C 1.37870 * 120.00134 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00222 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00028 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47199 * 180.02562 * 9 7 2 11 11 N 1.46498 * 109.47081 * 179.97438 * 10 9 7 12 12 C 1.34778 * 119.99898 * 180.02562 * 11 10 9 13 13 O 1.21350 * 120.00109 * 0.02562 * 12 11 10 14 14 C 1.49450 * 120.00096 * 179.97438 * 12 11 10 15 15 O 1.21352 * 119.99999 * 359.97438 * 14 12 11 16 16 N 1.34770 * 120.00308 * 180.02562 * 14 12 11 17 17 C 1.46498 * 120.00501 * 180.02562 * 16 14 12 18 18 C 1.53003 * 109.47779 * 179.97438 * 17 16 14 19 19 C 1.50695 * 109.47128 * 179.97438 * 18 17 16 20 20 C 1.39336 * 120.03313 * 270.19959 * 19 18 17 21 21 N 1.31090 * 121.74372 * 180.24753 * 20 19 18 22 22 C 1.33677 * 121.32490 * 359.79232 * 21 20 19 23 23 C 1.40602 * 121.07846 * 179.97438 * 22 21 20 24 24 C 1.36077 * 119.74756 * 180.02562 * 23 22 21 25 25 C 1.39365 * 121.06544 * 359.95101 * 24 23 22 26 26 C 1.36135 * 120.86733 * 0.02562 * 25 24 23 27 27 C 1.40427 * 119.61742 * 359.97438 * 26 25 24 28 28 C 1.36576 * 120.03152 * 90.00316 * 19 18 17 29 29 H 0.97002 * 119.99628 * 0.02562 * 1 2 3 30 30 H 1.08990 * 109.47275 * 59.99832 * 9 7 2 31 31 H 1.09002 * 109.46773 * 299.99804 * 9 7 2 32 32 H 1.09007 * 109.47317 * 59.99783 * 10 9 7 33 33 H 1.09001 * 109.46932 * 300.00122 * 10 9 7 34 34 H 0.96997 * 119.99998 * 359.97438 * 11 10 9 35 35 H 0.97005 * 120.00189 * 359.97438 * 16 14 12 36 36 H 1.09007 * 109.46969 * 59.99540 * 17 16 14 37 37 H 1.09001 * 109.47199 * 299.99930 * 17 16 14 38 38 H 1.09003 * 109.46563 * 60.00020 * 18 17 16 39 39 H 1.09001 * 109.46940 * 300.00385 * 18 17 16 40 40 H 1.07995 * 119.12636 * 0.02562 * 20 19 18 41 41 H 1.07996 * 120.12773 * 0.02822 * 23 22 21 42 42 H 1.07995 * 119.46463 * 179.97438 * 24 23 22 43 43 H 1.08002 * 119.56330 * 180.02562 * 25 24 23 44 44 H 1.08008 * 120.18851 * 179.97438 * 26 25 24 45 45 H 1.08002 * 120.92819 * 0.02562 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0018 11 7 1.5129 -4.9307 0.0024 12 6 2.1868 -6.0979 0.0041 13 8 3.4003 -6.0979 0.0056 14 6 1.4396 -7.3922 0.0053 15 8 0.2261 -7.3923 0.0053 16 7 2.1134 -8.5594 0.0075 17 6 1.3810 -9.8282 0.0081 18 6 2.3753 -10.9911 0.0101 19 6 1.6217 -12.2962 0.0113 20 6 1.2688 -12.8965 1.2182 21 7 0.6176 -14.0335 1.2585 22 6 0.2580 -14.6685 0.1384 23 6 -0.4398 -15.8881 0.1877 24 6 -0.7921 -16.5116 -0.9694 25 6 -0.4734 -15.9605 -2.2092 26 6 0.2010 -14.7812 -2.2967 27 6 0.5805 -14.1100 -1.1231 28 6 1.2806 -12.8896 -1.1705 29 1 -0.4850 0.8401 -0.0004 30 1 0.6248 -2.5571 -0.8896 31 1 0.6241 -2.5566 0.8903 32 1 2.8714 -3.6039 0.8923 33 1 2.8727 -3.6046 -0.8877 34 1 0.5429 -4.9308 0.0024 35 1 3.0835 -8.5594 0.0079 36 1 0.7554 -9.8869 -0.8826 37 1 0.7533 -9.8849 0.8974 38 1 3.0011 -10.9325 0.9006 39 1 3.0027 -10.9342 -0.8794 40 1 1.5420 -12.4140 2.1450 41 1 -0.6953 -16.3284 1.1401 42 1 -1.3277 -17.4484 -0.9263 43 1 -0.7653 -16.4759 -3.1123 44 1 0.4427 -14.3642 -3.2633 45 1 1.5436 -12.4370 -2.1152 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001336268714.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:08 Heat of formation + Delta-G solvation = -32.866527 kcal Electronic energy + Delta-G solvation = -26637.190039 eV Core-core repulsion = 22618.852495 eV Total energy + Delta-G solvation = -4018.337544 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.33707 -40.43272 -38.44627 -37.83906 -36.03178 -35.07784 -34.08220 -32.87740 -32.26765 -30.62395 -29.84937 -29.01502 -25.96775 -24.88540 -24.51332 -23.11644 -22.57028 -22.12107 -21.05434 -20.23531 -18.55798 -18.27514 -17.79744 -17.02971 -16.69015 -16.28725 -16.05739 -15.54078 -15.24255 -14.92628 -14.90884 -14.69093 -14.68438 -14.44193 -14.23158 -13.85551 -13.52224 -13.49244 -13.31479 -12.89979 -12.75768 -12.33323 -12.12047 -12.06859 -11.99342 -11.67352 -11.52751 -11.24901 -11.07164 -10.86904 -10.67637 -10.41208 -9.94327 -9.81240 -9.47220 -9.43052 -9.23599 -9.13780 -8.71864 -8.71618 -8.42851 -6.11035 -4.14857 -0.07256 0.32672 1.52979 1.57913 2.37793 2.53829 3.28378 3.34755 3.38312 3.39803 3.63778 3.75336 3.88397 4.11036 4.23562 4.25435 4.39329 4.40723 4.49622 4.53183 4.64492 4.73845 4.75541 4.81828 5.02895 5.08106 5.25913 5.31915 5.31962 5.49538 5.55451 5.58574 5.66991 5.88564 5.95840 6.03170 6.07863 6.16228 6.22108 6.37097 6.57302 6.67424 6.99248 7.44921 7.46206 7.56541 7.63460 7.86048 7.89223 8.19406 8.31803 8.90731 9.50198 11.00391 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.033732 B = 0.001381 C = 0.001367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.880151 B =20264.623877 C =20470.877752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.060 3.940 3 Si 0.898 3.102 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.524 4.524 8 H 0.060 0.940 9 C 0.010 3.990 10 C 0.118 3.882 11 N -0.686 5.686 12 C 0.497 3.503 13 O -0.534 6.534 14 C 0.508 3.492 15 O -0.518 6.518 16 N -0.707 5.707 17 C 0.122 3.878 18 C -0.089 4.089 19 C -0.135 4.135 20 C 0.142 3.858 21 N -0.472 5.472 22 C 0.123 3.877 23 C -0.093 4.093 24 C -0.102 4.102 25 C -0.117 4.117 26 C -0.095 4.095 27 C -0.101 4.101 28 C -0.051 4.051 29 H 0.263 0.737 30 H 0.025 0.975 31 H 0.025 0.975 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.411 0.589 35 H 0.413 0.587 36 H 0.074 0.926 37 H 0.075 0.925 38 H 0.089 0.911 39 H 0.087 0.913 40 H 0.161 0.839 41 H 0.135 0.865 42 H 0.130 0.870 43 H 0.128 0.872 44 H 0.131 0.869 45 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.371 -34.332 -2.862 34.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.142 4.142 3 Si 0.725 3.275 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.563 4.563 8 H 0.078 0.922 9 C -0.027 4.027 10 C -0.003 4.003 11 N -0.336 5.336 12 C 0.277 3.723 13 O -0.412 6.412 14 C 0.289 3.711 15 O -0.393 6.393 16 N -0.362 5.362 17 C -0.001 4.001 18 C -0.127 4.127 19 C -0.137 4.137 20 C -0.031 4.031 21 N -0.179 5.179 22 C 0.002 3.998 23 C -0.112 4.112 24 C -0.122 4.122 25 C -0.135 4.135 26 C -0.114 4.114 27 C -0.103 4.103 28 C -0.077 4.077 29 H 0.072 0.928 30 H 0.043 0.957 31 H 0.044 0.956 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.246 0.754 35 H 0.250 0.750 36 H 0.092 0.908 37 H 0.094 0.906 38 H 0.108 0.892 39 H 0.105 0.895 40 H 0.178 0.822 41 H 0.153 0.847 42 H 0.148 0.852 43 H 0.146 0.854 44 H 0.149 0.851 45 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 0.909 -34.659 -2.084 34.733 hybrid contribution 0.564 1.302 -0.833 1.645 sum 1.473 -33.357 -2.917 33.517 Atomic orbital electron populations 1.69963 1.06098 1.26955 1.50025 1.24998 0.94893 0.99435 0.94908 0.86498 0.79805 0.82958 0.78197 1.20553 1.21145 1.19719 1.21010 0.93222 0.90240 1.51785 0.92160 1.19362 0.94199 0.90877 0.98269 1.21944 0.96278 0.80733 1.01357 1.46241 1.11814 1.05805 1.69765 1.19951 0.87700 0.85232 0.79439 1.90729 1.13202 1.87535 1.49742 1.20470 0.87733 0.85563 0.77337 1.90771 1.13474 1.87659 1.47422 1.45713 1.11468 1.04833 1.74179 1.21416 0.94349 0.80958 1.03401 1.20750 0.97263 0.89900 1.04824 1.20390 1.01209 0.97827 0.94300 1.22955 0.92006 0.90584 0.97561 1.68083 1.11168 1.08678 1.30000 1.18939 0.97403 0.95347 0.88098 1.20838 0.97583 0.93377 0.99379 1.20946 0.99080 1.00061 0.92097 1.20960 0.98483 0.96001 0.98077 1.21028 0.97887 0.95289 0.97217 1.18852 1.00549 0.96234 0.94617 1.21424 0.94366 0.93126 0.98746 0.92771 0.95653 0.95638 0.91825 0.91836 0.75366 0.75021 0.90819 0.90630 0.89239 0.89492 0.82162 0.84682 0.85225 0.85418 0.85120 0.84118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.98 13.29 55.43 0.74 -25.24 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 3 Si 0.90 21.14 29.54 -169.99 -5.02 16.12 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 7 C -0.52 -14.31 9.11 -34.44 -0.31 -14.62 16 8 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 9 C 0.01 0.25 5.09 -27.88 -0.14 0.11 16 10 C 0.12 2.44 5.61 -4.04 -0.02 2.42 16 11 N -0.69 -12.27 5.55 -60.73 -0.34 -12.61 16 12 C 0.50 8.29 7.89 -11.58 -0.09 8.20 16 13 O -0.53 -9.73 16.48 5.50 0.09 -9.64 16 14 C 0.51 7.26 7.89 -11.59 -0.09 7.16 16 15 O -0.52 -8.57 16.48 5.49 0.09 -8.48 16 16 N -0.71 -7.22 5.55 -60.73 -0.34 -7.56 16 17 C 0.12 0.98 5.66 -4.04 -0.02 0.96 16 18 C -0.09 -0.47 5.46 -27.88 -0.15 -0.62 16 19 C -0.13 -0.90 5.12 -104.82 -0.54 -1.44 16 20 C 0.14 1.11 10.82 -17.46 -0.19 0.92 16 21 N -0.47 -4.71 10.34 -10.97 -0.11 -4.82 16 22 C 0.12 1.16 6.60 -84.86 -0.56 0.60 16 23 C -0.09 -0.72 9.98 -39.47 -0.39 -1.11 16 24 C -0.10 -0.59 9.94 -39.94 -0.40 -0.99 16 25 C -0.12 -0.65 9.96 -39.92 -0.40 -1.04 16 26 C -0.10 -0.60 9.77 -39.51 -0.39 -0.99 16 27 C -0.10 -0.82 5.74 -106.80 -0.61 -1.43 16 28 C -0.05 -0.35 9.54 -39.23 -0.37 -0.72 16 29 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 30 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.06 1.33 8.14 -51.92 -0.42 0.90 16 33 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 34 H 0.41 7.04 7.94 -40.82 -0.32 6.71 16 35 H 0.41 3.61 7.95 -40.82 -0.32 3.29 16 36 H 0.07 0.64 8.14 -51.92 -0.42 0.22 16 37 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.09 0.37 8.09 -51.93 -0.42 -0.05 16 39 H 0.09 0.37 8.08 -51.93 -0.42 -0.05 16 40 H 0.16 0.88 8.06 -52.49 -0.42 0.46 16 41 H 0.14 0.89 8.06 -52.49 -0.42 0.46 16 42 H 0.13 0.43 8.06 -52.49 -0.42 0.01 16 43 H 0.13 0.40 8.06 -52.49 -0.42 -0.02 16 44 H 0.13 0.54 8.06 -52.48 -0.42 0.11 16 45 H 0.14 0.65 8.06 -52.49 -0.42 0.22 16 LS Contribution 393.48 15.07 5.93 5.93 Total: -1.00 -33.80 393.48 -9.85 -43.64 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: -6.10 Total: 3.68 kcal Atomic # 6 Polarization: 3.76 SS G_CDS: -4.78 Total: -1.02 kcal Atomic # 7 Polarization: -50.18 SS G_CDS: -0.05 Total: -50.23 kcal Atomic # 8 Polarization: -18.30 SS G_CDS: 0.18 Total: -18.12 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -33.80 -9.85 -43.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336268714.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.776 kcal (2) G-P(sol) polarization free energy of solvation -33.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds