Wall clock time and date at job start Sat Apr 11 2020 06:17:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86807 * 119.99714 * 2 1 4 4 H 1.48500 * 109.47157 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47138 * 300.00210 * 3 2 1 6 6 H 1.48505 * 109.47155 * 60.00098 * 3 2 1 7 7 C 1.37874 * 120.00401 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00250 * 175.14041 * 7 2 1 9 9 C 1.50698 * 119.99926 * 355.41780 * 7 2 1 10 10 C 1.52996 * 115.55121 * 274.92660 * 9 7 2 11 11 N 1.46502 * 109.47063 * 294.81386 * 10 9 7 12 12 C 1.34774 * 120.00331 * 184.77839 * 11 10 9 13 13 O 1.21347 * 119.99723 * 5.03959 * 12 11 10 14 14 C 1.49449 * 120.00048 * 185.04195 * 12 11 10 15 15 O 1.21345 * 120.00315 * 5.08976 * 14 12 11 16 16 N 1.34778 * 120.00001 * 185.09256 * 14 12 11 17 17 C 1.46492 * 120.00351 * 180.02562 * 16 14 12 18 18 C 1.50700 * 109.47502 * 179.97438 * 17 16 14 19 19 C 1.36653 * 120.12044 * 259.72646 * 18 17 16 20 20 C 1.38791 * 120.52986 * 179.76157 * 19 18 17 21 21 C 1.37793 * 120.66512 * 0.49517 * 20 19 18 22 22 C 1.39084 * 119.77673 * 359.76267 * 21 20 19 23 23 N 1.37695 * 133.51612 * 180.02562 * 22 21 20 24 24 H 0.97002 * 125.05685 * 359.97438 * 23 22 21 25 25 C 1.36826 * 109.87454 * 180.02562 * 23 22 21 26 26 C 1.34231 * 109.94231 * 359.97438 * 25 23 22 27 27 C 1.39593 * 120.11532 * 79.99671 * 18 17 16 28 28 C 1.53002 * 117.49801 * 129.25521 * 9 7 2 29 29 C 1.53002 * 117.49725 * 60.59714 * 9 7 2 30 30 H 0.97005 * 120.00851 * 4.99739 * 1 2 3 31 31 H 1.08991 * 109.47335 * 54.81270 * 10 9 7 32 32 H 1.09002 * 109.46846 * 174.81992 * 10 9 7 33 33 H 0.97000 * 119.99835 * 4.78396 * 11 10 9 34 34 H 0.97003 * 119.99494 * 359.97438 * 16 14 12 35 35 H 1.09008 * 109.47015 * 299.99819 * 17 16 14 36 36 H 1.09006 * 109.47218 * 59.99467 * 17 16 14 37 37 H 1.08002 * 119.73615 * 359.96939 * 19 18 17 38 38 H 1.07997 * 119.67009 * 180.26079 * 20 19 18 39 39 H 1.07994 * 120.11393 * 179.79259 * 21 20 19 40 40 H 1.08009 * 125.03017 * 179.97438 * 25 23 22 41 41 H 1.08001 * 126.50249 * 179.97438 * 26 25 23 42 42 H 1.09007 * 117.49900 * 359.97438 * 28 9 7 43 43 H 1.08994 * 117.50021 * 145.02262 * 28 9 7 44 44 H 1.09005 * 117.49794 * 214.98180 * 29 9 7 45 45 H 1.09000 * 117.49885 * 359.97020 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3466 -0.0006 5 1 1.8902 2.3966 -1.2125 6 1 1.8903 2.3966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0816 -1.1957 -0.0787 9 6 1.2547 -2.4970 0.1054 10 6 0.9190 -2.9526 1.5268 11 7 2.1583 -3.2462 2.2510 12 6 2.1058 -3.7585 3.4965 13 8 1.0364 -4.0620 3.9831 14 6 3.3646 -3.9527 4.2782 15 8 4.4233 -3.5647 3.8298 16 7 3.3241 -4.5589 5.4813 17 6 4.5579 -4.7488 6.2479 18 6 4.2406 -5.4449 7.5462 19 6 4.1398 -4.7251 8.7035 20 6 3.8430 -5.3568 9.9031 21 6 3.6548 -6.7210 9.9513 22 6 3.7579 -7.4740 8.7865 23 7 3.6283 -8.8169 8.5110 24 1 3.4240 -9.5028 9.1659 25 6 3.8315 -9.0398 7.1764 26 6 4.0931 -7.8800 6.5532 27 6 4.0541 -6.8281 7.5720 28 6 1.5731 -3.5803 -0.9271 29 6 0.2453 -2.8219 -0.9976 30 1 -0.4851 0.8368 -0.0732 31 1 0.3753 -2.1616 2.0431 32 1 0.3017 -3.8500 1.4844 33 1 3.0166 -3.0718 1.8341 34 1 2.4777 -4.8688 5.8399 35 1 5.2546 -5.3564 5.6703 36 1 5.0088 -3.7786 6.4569 37 1 4.2889 -3.6556 8.6838 38 1 3.7626 -4.7739 10.8087 39 1 3.4276 -7.2038 10.8902 40 1 3.7880 -10.0059 6.6955 41 1 4.2945 -7.7476 5.5005 42 1 2.3246 -3.3504 -1.6825 43 1 1.5430 -4.6176 -0.5938 44 1 -0.6578 -3.3606 -0.7105 45 1 0.1232 -2.0929 -1.7987 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001336508635.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:10 Heat of formation + Delta-G solvation = 12.045471 kcal Electronic energy + Delta-G solvation = -28188.419203 eV Core-core repulsion = 24172.029190 eV Total energy + Delta-G solvation = -4016.390014 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.55634 -40.14588 -38.25910 -37.43320 -36.68103 -35.06407 -33.34403 -32.15053 -31.94638 -30.00969 -29.29424 -27.33310 -26.22167 -25.29795 -23.09214 -22.18731 -22.07972 -21.13263 -20.68541 -19.88660 -19.49935 -18.34389 -17.61091 -16.52000 -16.48531 -16.09470 -15.79452 -15.53591 -15.18083 -14.84732 -14.67211 -14.62744 -14.53309 -13.99000 -13.63657 -13.46254 -13.32104 -13.12919 -12.80627 -12.67954 -12.52470 -11.91079 -11.88219 -11.80374 -11.59691 -11.25729 -11.14447 -10.97435 -10.93235 -10.48948 -10.22941 -10.02550 -9.58705 -9.17995 -9.14322 -9.05112 -8.51127 -8.50717 -8.35444 -8.15691 -8.00947 -6.06663 -4.16114 0.72328 1.33753 1.85797 2.43286 2.80594 2.82310 3.27912 3.37150 3.41298 3.61415 3.66981 4.21486 4.29346 4.38434 4.53435 4.66784 4.85953 4.93033 4.98863 5.04079 5.21155 5.30807 5.34390 5.37118 5.47863 5.59993 5.69036 5.81965 5.98891 6.17988 6.27709 6.31315 6.35117 6.39690 6.42938 6.48785 6.50722 6.69635 6.78101 6.84687 7.04686 7.10725 7.19277 7.30598 7.36691 7.52600 7.83664 7.92403 8.21227 8.34154 8.58002 8.86477 9.51615 11.00444 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.017830 B = 0.002263 C = 0.002122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1570.016585 B =12368.176400 C =13192.006440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.073 3.927 3 Si 0.890 3.110 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.499 4.499 8 H 0.063 0.937 9 C 0.021 3.979 10 C 0.160 3.840 11 N -0.667 5.667 12 C 0.496 3.504 13 O -0.541 6.541 14 C 0.508 3.492 15 O -0.520 6.520 16 N -0.700 5.700 17 C 0.162 3.838 18 C -0.061 4.061 19 C -0.123 4.123 20 C -0.101 4.101 21 C -0.122 4.122 22 C 0.091 3.909 23 N -0.597 5.597 24 H 0.415 0.585 25 C 0.051 3.949 26 C -0.199 4.199 27 C -0.091 4.091 28 C -0.210 4.210 29 C -0.140 4.140 30 H 0.261 0.739 31 H 0.073 0.927 32 H 0.047 0.953 33 H 0.414 0.586 34 H 0.413 0.587 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.127 0.873 38 H 0.128 0.872 39 H 0.120 0.880 40 H 0.171 0.829 41 H 0.147 0.853 42 H 0.079 0.921 43 H 0.065 0.935 44 H 0.064 0.936 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.491 -16.893 18.804 26.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.131 4.131 3 Si 0.718 3.282 4 H -0.195 1.195 5 H -0.211 1.211 6 H -0.209 1.209 7 C -0.537 4.537 8 H 0.081 0.919 9 C 0.020 3.980 10 C 0.037 3.963 11 N -0.317 5.317 12 C 0.275 3.725 13 O -0.419 6.419 14 C 0.289 3.711 15 O -0.395 6.395 16 N -0.354 5.354 17 C 0.040 3.960 18 C -0.062 4.062 19 C -0.143 4.143 20 C -0.120 4.120 21 C -0.143 4.143 22 C -0.016 4.016 23 N -0.201 5.201 24 H 0.251 0.749 25 C -0.074 4.074 26 C -0.224 4.224 27 C -0.097 4.097 28 C -0.247 4.247 29 C -0.178 4.178 30 H 0.071 0.929 31 H 0.092 0.908 32 H 0.066 0.934 33 H 0.250 0.750 34 H 0.249 0.751 35 H 0.099 0.901 36 H 0.098 0.902 37 H 0.145 0.855 38 H 0.146 0.854 39 H 0.138 0.862 40 H 0.188 0.812 41 H 0.165 0.835 42 H 0.098 0.902 43 H 0.084 0.916 44 H 0.082 0.918 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 7.309 -16.773 18.901 26.306 hybrid contribution 0.224 0.512 0.290 0.630 sum 7.533 -16.261 19.191 26.258 Atomic orbital electron populations 1.69994 1.05876 1.26807 1.48533 1.24989 0.94836 0.99038 0.94249 0.86564 0.80377 0.83692 0.77591 1.19541 1.21051 1.20919 1.20430 0.92846 0.88470 1.51939 0.91922 1.19039 0.99697 0.93578 0.85675 1.21200 0.83454 0.98360 0.93284 1.45882 1.12622 1.59482 1.13675 1.19934 0.88759 0.80337 0.83469 1.90713 1.30324 1.51071 1.69838 1.20487 0.89891 0.78563 0.82166 1.90755 1.31232 1.48274 1.69237 1.45779 1.11553 1.59443 1.18608 1.20207 0.86731 1.00305 0.88801 1.19001 1.00959 0.91421 0.94779 1.20648 1.01743 1.00009 0.91884 1.20808 0.99764 0.93360 0.98058 1.20071 1.05200 0.93722 0.95340 1.18238 1.03928 0.83859 0.95583 1.41791 1.62951 1.06481 1.08833 0.74863 1.21854 1.02894 0.99965 0.82733 1.21759 1.10970 0.90680 0.99000 1.19030 1.04911 0.92768 0.92958 1.23032 1.00708 0.95539 1.05419 1.22475 0.90766 1.01278 1.03273 0.92922 0.90837 0.93444 0.75015 0.75088 0.90146 0.90215 0.85532 0.85449 0.86230 0.81187 0.83510 0.90223 0.91644 0.91758 0.89404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.24 12.65 55.43 0.70 -23.54 16 2 C 0.07 1.95 5.43 -17.82 -0.10 1.85 16 3 Si 0.89 20.93 29.54 -169.99 -5.02 15.91 16 4 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.50 -13.04 8.59 -34.44 -0.30 -13.34 16 8 H 0.06 1.64 7.82 -52.48 -0.41 1.23 16 9 C 0.02 0.49 1.47 -155.66 -0.23 0.26 16 10 C 0.16 3.59 5.53 -4.04 -0.02 3.56 16 11 N -0.67 -13.57 5.46 -60.73 -0.33 -13.90 16 12 C 0.50 9.52 7.88 -11.59 -0.09 9.43 16 13 O -0.54 -11.26 16.47 5.50 0.09 -11.16 16 14 C 0.51 8.55 7.89 -11.59 -0.09 8.46 16 15 O -0.52 -9.72 16.50 5.50 0.09 -9.63 16 16 N -0.70 -9.48 5.54 -61.91 -0.34 -9.82 16 17 C 0.16 1.87 5.71 -5.20 -0.03 1.84 16 18 C -0.06 -0.64 5.24 -104.69 -0.55 -1.19 16 19 C -0.12 -1.15 9.59 -39.95 -0.38 -1.53 16 20 C -0.10 -0.82 10.01 -39.54 -0.40 -1.21 16 21 C -0.12 -0.99 10.08 -39.43 -0.40 -1.39 16 22 C 0.09 0.84 7.28 -83.99 -0.61 0.23 16 23 N -0.60 -4.12 6.07 -10.65 -0.06 -4.18 16 24 H 0.41 1.56 8.96 -40.82 -0.37 1.19 16 25 C 0.05 0.37 11.81 -16.74 -0.20 0.17 16 26 C -0.20 -1.91 10.94 -37.67 -0.41 -2.32 16 27 C -0.09 -0.97 6.16 -105.14 -0.65 -1.62 16 28 C -0.21 -4.40 9.96 -26.69 -0.27 -4.66 16 29 C -0.14 -3.18 9.14 -26.69 -0.24 -3.43 16 30 H 0.26 6.93 8.32 -40.82 -0.34 6.59 16 31 H 0.07 1.85 8.14 -51.93 -0.42 1.42 16 32 H 0.05 1.03 8.05 -51.93 -0.42 0.61 16 33 H 0.41 8.32 7.84 -40.82 -0.32 8.00 16 34 H 0.41 5.48 7.95 -40.82 -0.32 5.15 16 35 H 0.08 0.93 8.14 -51.92 -0.42 0.51 16 36 H 0.08 0.90 7.98 -51.93 -0.41 0.48 16 37 H 0.13 1.02 8.01 -52.49 -0.42 0.60 16 38 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 39 H 0.12 0.68 8.06 -52.49 -0.42 0.26 16 40 H 0.17 0.66 8.06 -52.48 -0.42 0.23 16 41 H 0.15 1.36 8.06 -52.49 -0.42 0.93 16 42 H 0.08 1.65 8.14 -51.93 -0.42 1.23 16 43 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 44 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 45 H 0.09 2.14 8.14 -51.93 -0.42 1.72 16 LS Contribution 392.29 15.07 5.91 5.91 Total: -1.00 -31.55 392.29 -9.96 -41.52 By element: Atomic # 1 Polarization: 19.82 SS G_CDS: -6.04 Total: 13.79 kcal Atomic # 6 Polarization: 0.08 SS G_CDS: -4.96 Total: -4.88 kcal Atomic # 7 Polarization: -51.41 SS G_CDS: -0.04 Total: -51.45 kcal Atomic # 8 Polarization: -20.98 SS G_CDS: 0.18 Total: -20.80 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -31.55 -9.96 -41.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336508635.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.561 kcal (2) G-P(sol) polarization free energy of solvation -31.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.516 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds