Wall clock time and date at job start Sat Apr 11 2020 06:17:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86794 * 120.00263 * 2 1 4 4 H 1.48500 * 109.47214 * 269.99247 * 3 2 1 5 5 H 1.48498 * 109.47381 * 29.99534 * 3 2 1 6 6 H 1.48504 * 109.47450 * 149.99438 * 3 2 1 7 7 C 1.37882 * 119.99871 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99694 * 0.02562 * 7 2 1 9 9 C 1.50695 * 120.00292 * 180.02562 * 7 2 1 10 10 H 1.09005 * 109.52884 * 60.07595 * 9 7 2 11 11 C 1.53043 * 109.50072 * 180.16269 * 9 7 2 12 12 C 1.53034 * 109.53904 * 181.31349 * 11 9 7 13 13 C 1.53625 * 109.24361 * 298.50930 * 12 11 9 14 14 N 1.46925 * 108.54254 * 54.85662 * 13 12 11 15 15 C 1.34777 * 120.63316 * 126.36521 * 14 13 12 16 16 O 1.21276 * 120.00418 * 179.71893 * 15 14 13 17 17 C 1.50701 * 119.99954 * 359.72601 * 15 14 13 18 18 N 1.46502 * 109.47328 * 179.97438 * 17 15 14 19 19 N 1.28161 * 118.81495 * 90.00021 * 18 17 15 20 20 C 1.30049 * 124.55354 * 180.02562 * 19 18 17 21 21 C 1.42155 * 120.31838 * 359.97438 * 20 19 18 22 22 O 1.21982 * 121.72904 * 180.02562 * 21 20 19 23 23 C 1.47294 * 116.54117 * 359.97438 * 21 20 19 24 24 C 1.39283 * 122.37165 * 180.02562 * 23 21 20 25 25 C 1.36735 * 119.48433 * 179.97438 * 24 23 21 26 26 C 1.38914 * 120.57681 * 359.97438 * 25 24 23 27 27 C 1.37719 * 120.85457 * 0.02562 * 26 25 24 28 28 C 1.37212 * 118.81989 * 270.01790 * 18 17 15 29 29 C 1.46928 * 118.73941 * 306.09719 * 14 13 12 30 30 H 0.97006 * 119.99913 * 0.02562 * 1 2 3 31 31 H 1.09003 * 109.45499 * 301.33320 * 11 9 7 32 32 H 1.08996 * 109.45520 * 61.30611 * 11 9 7 33 33 H 1.09004 * 109.50191 * 58.58346 * 12 11 9 34 34 H 1.08999 * 109.49831 * 178.65132 * 12 11 9 35 35 H 1.08998 * 109.74040 * 295.11790 * 13 12 11 36 36 H 1.09000 * 109.66711 * 174.54690 * 13 12 11 37 37 H 1.09003 * 109.47561 * 59.99375 * 17 15 14 38 38 H 1.09004 * 109.47168 * 299.99938 * 17 15 14 39 39 H 1.07998 * 119.84555 * 180.02562 * 20 19 18 40 40 H 1.08001 * 120.26316 * 359.95887 * 24 23 21 41 41 H 1.07998 * 119.70951 * 179.72595 * 25 24 23 42 42 H 1.08004 * 119.57343 * 179.97438 * 26 25 24 43 43 H 1.08007 * 120.21001 * 180.02562 * 27 26 25 44 44 H 1.08999 * 109.58695 * 173.64739 * 29 14 13 45 45 H 1.09005 * 109.58328 * 294.07073 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 2.4968 2.0462 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4401 0.7002 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5114 -1.1942 0.0011 10 1 3.8755 -0.6816 0.8915 11 6 4.0222 -2.6369 -0.0025 12 6 5.5522 -2.6382 0.0312 13 6 6.0869 -1.9334 -1.2247 14 7 5.4865 -0.5945 -1.3004 15 6 6.2631 0.5006 -1.4197 16 8 5.7552 1.5999 -1.4864 17 6 7.7626 0.3591 -1.4706 18 7 8.3740 1.6839 -1.6020 19 7 8.6781 2.3320 -0.5390 20 6 9.2231 3.5128 -0.5256 21 6 9.5248 4.1778 -1.7452 22 8 10.0363 5.2851 -1.7626 23 6 9.1890 3.4600 -2.9868 24 6 9.4325 3.9979 -4.2483 25 6 9.0973 3.2794 -5.3623 26 6 8.5187 2.0220 -5.2447 27 6 8.2696 1.4722 -4.0068 28 6 8.6001 2.1863 -2.8586 29 6 4.0232 -0.4725 -1.2495 30 1 -0.4850 0.8401 -0.0004 31 1 3.6392 -3.1598 0.8739 32 1 3.6786 -3.1414 -0.9054 33 1 5.8970 -2.1120 0.9213 34 1 5.9147 -3.6659 0.0528 35 1 5.8160 -2.5059 -2.1117 36 1 7.1714 -1.8444 -1.1618 37 1 8.0408 -0.2557 -2.3266 38 1 8.1141 -0.1144 -0.5538 39 1 9.4483 3.9901 0.4167 40 1 9.8823 4.9749 -4.3458 41 1 9.2805 3.6948 -6.3423 42 1 8.2600 1.4688 -6.1355 43 1 7.8196 0.4935 -3.9275 44 1 3.7457 0.5806 -1.2030 45 1 3.5874 -0.9284 -2.1386 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362947951.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:12 Heat of formation + Delta-G solvation = 21.061410 kcal Electronic energy + Delta-G solvation = -30054.176647 eV Core-core repulsion = 26038.177594 eV Total energy + Delta-G solvation = -4015.999053 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.08864 -39.98267 -38.56312 -38.28043 -37.11427 -34.15078 -33.50998 -32.11833 -31.50387 -31.06921 -30.65714 -28.53492 -25.35950 -25.25026 -24.60295 -24.49144 -22.20870 -22.02287 -20.12063 -19.46009 -19.01746 -18.69881 -17.72017 -17.34407 -16.78399 -16.15580 -15.83503 -15.53520 -15.34822 -15.17452 -14.65450 -14.54788 -14.26523 -14.12248 -14.02112 -13.93179 -13.46713 -13.13926 -13.00972 -12.83001 -12.80990 -12.47874 -12.36064 -12.20769 -11.87564 -11.52318 -11.36674 -11.18395 -10.75242 -10.54155 -10.25153 -10.21127 -9.89910 -9.78064 -9.58397 -9.43831 -9.34967 -9.20844 -8.69708 -8.29298 -8.06682 -6.18275 -4.20377 0.32230 0.62624 1.39925 1.85105 2.56709 2.74660 3.11049 3.31153 3.40785 3.50530 3.63043 3.87039 3.98214 4.27035 4.31024 4.34623 4.42496 4.57377 4.75693 4.83595 4.88702 4.90715 5.09792 5.12347 5.14370 5.26896 5.30872 5.37074 5.53445 5.61330 5.65616 5.82625 5.95746 5.99393 6.01006 6.08781 6.11711 6.25661 6.37869 6.45437 6.49437 6.59725 6.65492 7.03206 7.31660 7.39303 7.55770 7.62431 7.97734 8.19391 8.40330 8.84883 9.43055 10.93617 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.014026 B = 0.003505 C = 0.003299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1995.857379 B = 7987.089825 C = 8486.533636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.075 3.925 3 Si 0.879 3.121 4 H -0.275 1.275 5 H -0.294 1.294 6 H -0.264 1.264 7 C -0.518 4.518 8 H 0.078 0.922 9 C 0.005 3.995 10 H 0.031 0.969 11 C -0.101 4.101 12 C -0.137 4.137 13 C 0.105 3.895 14 N -0.601 5.601 15 C 0.488 3.512 16 O -0.527 6.527 17 C 0.097 3.903 18 N -0.320 5.320 19 N -0.172 5.172 20 C -0.044 4.044 21 C 0.393 3.607 22 O -0.479 6.479 23 C -0.207 4.207 24 C -0.026 4.026 25 C -0.157 4.157 26 C -0.050 4.050 27 C -0.164 4.164 28 C 0.167 3.833 29 C 0.102 3.898 30 H 0.266 0.734 31 H 0.061 0.939 32 H 0.057 0.943 33 H 0.064 0.936 34 H 0.068 0.932 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.127 0.873 38 H 0.133 0.867 39 H 0.194 0.806 40 H 0.140 0.860 41 H 0.133 0.867 42 H 0.135 0.865 43 H 0.135 0.865 44 H 0.079 0.921 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.537 -2.728 -8.395 23.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.128 4.128 3 Si 0.708 3.292 4 H -0.201 1.201 5 H -0.222 1.222 6 H -0.189 1.189 7 C -0.556 4.556 8 H 0.096 0.904 9 C -0.014 4.014 10 H 0.049 0.951 11 C -0.139 4.139 12 C -0.175 4.175 13 C -0.018 4.018 14 N -0.335 5.335 15 C 0.272 3.728 16 O -0.403 6.403 17 C -0.027 4.027 18 N -0.118 5.118 19 N 0.003 4.997 20 C -0.241 4.241 21 C 0.275 3.725 22 O -0.355 6.355 23 C -0.212 4.212 24 C -0.044 4.044 25 C -0.177 4.177 26 C -0.069 4.069 27 C -0.185 4.185 28 C 0.063 3.937 29 C -0.018 4.018 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.082 0.918 34 H 0.087 0.913 35 H 0.092 0.908 36 H 0.091 0.909 37 H 0.144 0.856 38 H 0.151 0.849 39 H 0.210 0.790 40 H 0.158 0.842 41 H 0.151 0.849 42 H 0.153 0.847 43 H 0.153 0.847 44 H 0.097 0.903 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 21.028 -2.150 -7.856 22.551 hybrid contribution 0.334 1.335 -0.604 1.503 sum 21.362 -0.815 -8.459 22.991 Atomic orbital electron populations 1.69879 1.06257 1.27235 1.49685 1.25032 0.94740 0.99019 0.94028 0.87010 0.79723 0.83565 0.78874 1.20116 1.22158 1.18894 1.20942 0.88129 0.94646 1.51927 0.90353 1.19487 0.96927 0.92188 0.92826 0.95096 1.21445 0.91887 0.98799 1.01745 1.22067 0.98731 0.99660 0.97061 1.21898 0.96798 0.83473 0.99655 1.48462 1.08624 1.05445 1.70947 1.20595 0.88503 0.85301 0.78351 1.90780 1.74613 1.25459 1.49418 1.22002 0.92452 0.81017 1.07241 1.43942 1.51569 1.16532 0.99804 1.70025 1.04871 1.10121 1.14645 1.25026 1.06060 0.91860 1.01185 1.19325 0.77519 0.86822 0.88786 1.90727 1.36663 1.18735 1.89416 1.20351 1.08700 0.94968 0.97131 1.20770 0.94164 0.99254 0.90225 1.20938 1.02260 0.95428 0.99030 1.21202 0.93892 0.94891 0.96920 1.20779 1.05544 1.01338 0.90860 1.18747 0.95526 0.93348 0.86068 1.22712 0.74921 1.02732 1.01423 0.92408 0.92019 0.92391 0.91763 0.91343 0.90812 0.90906 0.85563 0.84910 0.78952 0.84222 0.84946 0.84680 0.84685 0.90270 0.91207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.95 13.96 55.43 0.77 -26.18 16 2 C 0.07 2.14 5.45 -17.82 -0.10 2.04 16 3 Si 0.88 23.10 24.32 -169.99 -4.13 18.97 16 4 H -0.27 -7.33 6.92 56.52 0.39 -6.94 16 5 H -0.29 -7.77 7.11 56.52 0.40 -7.36 16 6 H -0.26 -6.95 6.53 56.52 0.37 -6.59 16 7 C -0.52 -13.88 9.15 -34.44 -0.31 -14.20 16 8 H 0.08 2.24 7.99 -52.48 -0.42 1.82 16 9 C 0.01 0.12 1.84 -91.65 -0.17 -0.05 16 10 H 0.03 0.73 7.21 -51.93 -0.37 0.36 16 11 C -0.10 -1.71 5.10 -26.69 -0.14 -1.85 16 12 C -0.14 -1.68 6.10 -26.39 -0.16 -1.84 16 13 C 0.10 1.14 6.37 -3.49 -0.02 1.11 16 14 N -0.60 -9.61 2.97 -172.50 -0.51 -10.13 16 15 C 0.49 7.95 7.77 -10.98 -0.09 7.86 16 16 O -0.53 -11.42 15.84 5.56 0.09 -11.33 16 17 C 0.10 1.06 4.13 -5.19 -0.02 1.04 16 18 N -0.32 -4.24 2.78 -59.83 -0.17 -4.41 16 19 N -0.17 -2.41 10.73 30.98 0.33 -2.08 16 20 C -0.04 -0.59 11.34 -16.80 -0.19 -0.78 16 21 C 0.39 5.78 7.01 -34.40 -0.24 5.54 16 22 O -0.48 -7.93 17.52 4.94 0.09 -7.84 16 23 C -0.21 -2.82 5.90 -104.82 -0.62 -3.44 16 24 C -0.03 -0.29 9.66 -39.74 -0.38 -0.67 16 25 C -0.16 -1.43 9.98 -39.87 -0.40 -1.83 16 26 C -0.05 -0.44 10.00 -39.52 -0.40 -0.83 16 27 C -0.16 -1.71 9.20 -39.41 -0.36 -2.07 16 28 C 0.17 2.18 6.56 -84.09 -0.55 1.62 16 29 C 0.10 2.13 5.10 -3.71 -0.02 2.11 16 30 H 0.27 7.60 8.31 -40.82 -0.34 7.27 16 31 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 33 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.07 0.50 5.93 -51.93 -0.31 0.19 16 37 H 0.13 0.86 5.95 -51.93 -0.31 0.55 16 38 H 0.13 1.12 7.69 -51.93 -0.40 0.72 16 39 H 0.19 2.01 8.06 -52.49 -0.42 1.59 16 40 H 0.14 1.45 7.88 -52.49 -0.41 1.04 16 41 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 42 H 0.14 0.78 8.06 -52.48 -0.42 0.36 16 43 H 0.14 1.13 6.23 -52.48 -0.33 0.80 16 44 H 0.08 1.92 2.32 -51.93 -0.12 1.80 16 45 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 LS Contribution 361.85 15.07 5.45 5.45 Total: -1.00 -36.79 361.85 -7.90 -44.69 By element: Atomic # 1 Polarization: 4.74 SS G_CDS: -5.65 Total: -0.92 kcal Atomic # 6 Polarization: -2.07 SS G_CDS: -4.17 Total: -6.24 kcal Atomic # 7 Polarization: -43.22 SS G_CDS: 0.43 Total: -42.79 kcal Atomic # 8 Polarization: -19.34 SS G_CDS: 0.17 Total: -19.17 kcal Atomic # 14 Polarization: 23.10 SS G_CDS: -4.13 Total: 18.97 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -36.79 -7.90 -44.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362947951.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.754 kcal (2) G-P(sol) polarization free energy of solvation -36.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.693 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds