Wall clock time and date at job start Sat Apr 11 2020 06:17:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86794 * 120.00263 * 2 1 4 4 H 1.48500 * 109.47214 * 269.99247 * 3 2 1 5 5 H 1.48498 * 109.47381 * 29.99534 * 3 2 1 6 6 H 1.48504 * 109.47450 * 149.99438 * 3 2 1 7 7 C 1.37882 * 119.99871 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99694 * 0.02562 * 7 2 1 9 9 C 1.50695 * 120.00292 * 180.02562 * 7 2 1 10 10 H 1.09005 * 109.52884 * 60.07595 * 9 7 2 11 11 C 1.53043 * 109.50072 * 180.16269 * 9 7 2 12 12 C 1.53034 * 109.53904 * 181.31349 * 11 9 7 13 13 C 1.53625 * 109.24361 * 298.50930 * 12 11 9 14 14 N 1.46925 * 108.54254 * 54.85662 * 13 12 11 15 15 C 1.34777 * 120.63316 * 126.36521 * 14 13 12 16 16 O 1.21276 * 120.00418 * 179.71893 * 15 14 13 17 17 C 1.50701 * 119.99954 * 359.72601 * 15 14 13 18 18 N 1.46502 * 109.47328 * 179.97438 * 17 15 14 19 19 N 1.28161 * 118.81495 * 90.00021 * 18 17 15 20 20 C 1.30049 * 124.55354 * 180.02562 * 19 18 17 21 21 C 1.42155 * 120.31838 * 359.97438 * 20 19 18 22 22 O 1.21982 * 121.72904 * 180.02562 * 21 20 19 23 23 C 1.47294 * 116.54117 * 359.97438 * 21 20 19 24 24 C 1.39283 * 122.37165 * 180.02562 * 23 21 20 25 25 C 1.36735 * 119.48433 * 179.97438 * 24 23 21 26 26 C 1.38914 * 120.57681 * 359.97438 * 25 24 23 27 27 C 1.37719 * 120.85457 * 0.02562 * 26 25 24 28 28 C 1.37212 * 118.81989 * 270.01790 * 18 17 15 29 29 C 1.46928 * 118.73941 * 306.09719 * 14 13 12 30 30 H 0.97006 * 119.99913 * 0.02562 * 1 2 3 31 31 H 1.09003 * 109.45499 * 301.33320 * 11 9 7 32 32 H 1.08996 * 109.45520 * 61.30611 * 11 9 7 33 33 H 1.09004 * 109.50191 * 58.58346 * 12 11 9 34 34 H 1.08999 * 109.49831 * 178.65132 * 12 11 9 35 35 H 1.08998 * 109.74040 * 295.11790 * 13 12 11 36 36 H 1.09000 * 109.66711 * 174.54690 * 13 12 11 37 37 H 1.09003 * 109.47561 * 59.99375 * 17 15 14 38 38 H 1.09004 * 109.47168 * 299.99938 * 17 15 14 39 39 H 1.07998 * 119.84555 * 180.02562 * 20 19 18 40 40 H 1.08001 * 120.26316 * 359.95887 * 24 23 21 41 41 H 1.07998 * 119.70951 * 179.72595 * 25 24 23 42 42 H 1.08004 * 119.57343 * 179.97438 * 26 25 24 43 43 H 1.08007 * 120.21001 * 180.02562 * 27 26 25 44 44 H 1.08999 * 109.58695 * 173.64739 * 29 14 13 45 45 H 1.09005 * 109.58328 * 294.07073 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 2.4968 2.0462 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4401 0.7002 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5114 -1.1942 0.0011 10 1 3.8755 -0.6816 0.8915 11 6 4.0222 -2.6369 -0.0025 12 6 5.5522 -2.6382 0.0312 13 6 6.0869 -1.9334 -1.2247 14 7 5.4865 -0.5945 -1.3004 15 6 6.2631 0.5006 -1.4197 16 8 5.7552 1.5999 -1.4864 17 6 7.7626 0.3591 -1.4706 18 7 8.3740 1.6839 -1.6020 19 7 8.6781 2.3320 -0.5390 20 6 9.2231 3.5128 -0.5256 21 6 9.5248 4.1778 -1.7452 22 8 10.0363 5.2851 -1.7626 23 6 9.1890 3.4600 -2.9868 24 6 9.4325 3.9979 -4.2483 25 6 9.0973 3.2794 -5.3623 26 6 8.5187 2.0220 -5.2447 27 6 8.2696 1.4722 -4.0068 28 6 8.6001 2.1863 -2.8586 29 6 4.0232 -0.4725 -1.2495 30 1 -0.4850 0.8401 -0.0004 31 1 3.6392 -3.1598 0.8739 32 1 3.6786 -3.1414 -0.9054 33 1 5.8970 -2.1120 0.9213 34 1 5.9147 -3.6659 0.0528 35 1 5.8160 -2.5059 -2.1117 36 1 7.1714 -1.8444 -1.1618 37 1 8.0408 -0.2557 -2.3266 38 1 8.1141 -0.1144 -0.5538 39 1 9.4483 3.9901 0.4167 40 1 9.8823 4.9749 -4.3458 41 1 9.2805 3.6948 -6.3423 42 1 8.2600 1.4688 -6.1355 43 1 7.8196 0.4935 -3.9275 44 1 3.7457 0.5806 -1.2030 45 1 3.5874 -0.9284 -2.1386 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362947951.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:12 Heat of formation + Delta-G solvation = -4.786963 kcal Electronic energy + Delta-G solvation = -30055.297516 eV Core-core repulsion = 26038.177594 eV Total energy + Delta-G solvation = -4017.119923 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.02429 -41.21160 -39.64645 -39.11364 -38.47276 -35.48706 -34.94826 -33.68869 -32.38572 -32.24506 -31.75511 -29.62026 -26.99862 -26.36337 -25.73864 -25.39110 -23.56494 -22.99722 -21.48932 -20.36208 -20.19113 -19.64538 -18.98980 -18.77995 -18.30061 -17.28808 -16.97137 -16.63339 -16.46443 -16.19146 -16.08065 -15.49178 -15.46291 -15.33986 -15.21449 -14.97472 -14.88135 -14.66289 -14.39318 -13.99864 -13.70875 -13.65506 -13.32645 -13.22887 -13.17338 -12.93877 -12.78112 -12.36893 -12.23296 -12.13886 -11.81365 -11.61044 -11.39862 -11.12636 -11.05302 -10.85460 -10.76308 -10.60907 -10.24469 -9.64557 -8.98945 -8.43577 -6.44161 -0.59801 -0.24251 0.50032 0.97844 1.15823 1.23885 1.33639 1.40408 1.82720 1.98437 2.14923 2.73197 2.94288 2.94855 3.13397 3.30057 3.47899 3.63844 3.84717 3.98560 4.05076 4.13320 4.15795 4.16645 4.19085 4.21580 4.42009 4.45215 4.53352 4.59399 4.63145 4.77854 4.78597 4.86593 4.89221 4.98520 5.11530 5.23319 5.26488 5.27940 5.34648 5.39185 5.55523 5.63053 5.69192 5.73144 6.23814 6.35024 6.37941 6.66039 6.98140 7.01874 7.21449 8.72682 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.014026 B = 0.003505 C = 0.003299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1995.857379 B = 7987.089825 C = 8486.533636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C 0.032 3.968 3 Si 0.936 3.064 4 H -0.286 1.286 5 H -0.299 1.299 6 H -0.270 1.270 7 C -0.509 4.509 8 H 0.053 0.947 9 C 0.003 3.997 10 H 0.011 0.989 11 C -0.100 4.100 12 C -0.130 4.130 13 C 0.097 3.903 14 N -0.600 5.600 15 C 0.483 3.517 16 O -0.591 6.591 17 C 0.102 3.898 18 N -0.321 5.321 19 N -0.180 5.180 20 C -0.058 4.058 21 C 0.381 3.619 22 O -0.517 6.517 23 C -0.236 4.236 24 C -0.045 4.045 25 C -0.147 4.147 26 C -0.042 4.042 27 C -0.167 4.167 28 C 0.146 3.854 29 C 0.109 3.891 30 H 0.266 0.734 31 H 0.052 0.948 32 H 0.062 0.938 33 H 0.059 0.941 34 H 0.111 0.889 35 H 0.098 0.902 36 H 0.128 0.872 37 H 0.179 0.821 38 H 0.166 0.834 39 H 0.210 0.790 40 H 0.138 0.862 41 H 0.164 0.836 42 H 0.175 0.825 43 H 0.162 0.838 44 H 0.042 0.958 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.535 -5.591 -10.416 27.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.167 4.167 3 Si 0.767 3.233 4 H -0.213 1.213 5 H -0.227 1.227 6 H -0.195 1.195 7 C -0.548 4.548 8 H 0.071 0.929 9 C -0.016 4.016 10 H 0.029 0.971 11 C -0.137 4.137 12 C -0.168 4.168 13 C -0.024 4.024 14 N -0.332 5.332 15 C 0.270 3.730 16 O -0.471 6.471 17 C -0.021 4.021 18 N -0.121 5.121 19 N -0.006 5.006 20 C -0.254 4.254 21 C 0.267 3.733 22 O -0.397 6.397 23 C -0.241 4.241 24 C -0.064 4.064 25 C -0.166 4.166 26 C -0.061 4.061 27 C -0.188 4.188 28 C 0.042 3.958 29 C -0.013 4.013 30 H 0.076 0.924 31 H 0.070 0.930 32 H 0.081 0.919 33 H 0.078 0.922 34 H 0.129 0.871 35 H 0.116 0.884 36 H 0.145 0.855 37 H 0.196 0.804 38 H 0.183 0.817 39 H 0.226 0.774 40 H 0.156 0.844 41 H 0.182 0.818 42 H 0.192 0.808 43 H 0.179 0.821 44 H 0.060 0.940 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 24.066 -5.073 -9.869 26.501 hybrid contribution -0.651 2.090 -0.060 2.190 sum 23.415 -2.983 -9.930 25.608 Atomic orbital electron populations 1.69973 1.07441 1.27732 1.52553 1.25558 0.95055 1.01292 0.94780 0.86110 0.78181 0.81132 0.77840 1.21290 1.22703 1.19515 1.21378 0.91184 0.93075 1.49119 0.92880 1.19430 0.93626 0.95896 0.92664 0.97105 1.21392 0.95977 0.94735 1.01621 1.22042 0.94440 1.02527 0.97797 1.22401 0.99611 0.80520 0.99849 1.48442 1.06449 1.07887 1.70453 1.21541 0.90733 0.84098 0.76605 1.90763 1.76221 1.27972 1.52141 1.22343 0.87787 0.80780 1.11223 1.44227 1.50919 1.17116 0.99828 1.70015 1.04836 1.10254 1.15455 1.25230 1.06571 0.92013 1.01559 1.19677 0.76975 0.86547 0.90065 1.90689 1.38896 1.20111 1.89964 1.20520 1.10245 0.95927 0.97388 1.20954 0.95125 0.99799 0.90474 1.21361 1.00373 0.95327 0.99509 1.21723 0.91986 0.94608 0.97791 1.21199 1.04942 1.02266 0.90411 1.19031 0.96368 0.93556 0.86824 1.22089 0.78897 0.99939 1.00404 0.92429 0.92965 0.91910 0.92243 0.87064 0.88369 0.85450 0.80428 0.81673 0.77366 0.84427 0.81824 0.80791 0.82069 0.93984 0.91163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.45 13.96 21.45 0.30 -58.15 16 2 C 0.03 1.87 5.45 84.66 0.46 2.33 16 3 Si 0.94 50.30 24.32 68.60 1.67 51.97 16 4 H -0.29 -15.65 6.92 99.48 0.69 -14.96 16 5 H -0.30 -16.01 7.11 99.48 0.71 -15.31 16 6 H -0.27 -14.49 6.53 99.48 0.65 -13.84 16 7 C -0.51 -27.90 9.15 25.60 0.23 -27.66 16 8 H 0.05 3.12 7.99 -2.91 -0.02 3.10 16 9 C 0.00 0.15 1.84 -11.46 -0.02 0.13 16 10 H 0.01 0.51 7.21 -2.38 -0.02 0.50 16 11 C -0.10 -3.14 5.10 30.62 0.16 -2.99 16 12 C -0.13 -2.53 6.10 30.82 0.19 -2.34 16 13 C 0.10 1.50 6.37 86.51 0.55 2.05 16 14 N -0.60 -17.15 2.97 -818.06 -2.43 -19.58 16 15 C 0.48 14.31 7.77 87.66 0.68 14.99 16 16 O -0.59 -25.28 15.84 -3.02 -0.05 -25.32 16 17 C 0.10 1.72 4.13 85.63 0.35 2.07 16 18 N -0.32 -7.74 2.78 -343.20 -0.95 -8.69 16 19 N -0.18 -4.86 10.73 -55.89 -0.60 -5.46 16 20 C -0.06 -1.58 11.34 85.93 0.97 -0.60 16 21 C 0.38 11.68 7.01 25.63 0.18 11.86 16 22 O -0.52 -18.14 17.52 -5.26 -0.09 -18.23 16 23 C -0.24 -6.40 5.90 -19.99 -0.12 -6.51 16 24 C -0.04 -0.99 9.66 22.17 0.21 -0.78 16 25 C -0.15 -2.21 9.98 22.08 0.22 -1.99 16 26 C -0.04 -0.55 10.00 22.31 0.22 -0.33 16 27 C -0.17 -2.80 9.20 22.38 0.21 -2.60 16 28 C 0.15 3.49 6.56 39.19 0.26 3.75 16 29 C 0.11 4.45 5.10 86.36 0.44 4.89 16 30 H 0.27 15.80 8.31 -92.70 -0.77 15.03 16 31 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 33 H 0.06 1.25 8.14 -2.38 -0.02 1.23 16 34 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.13 0.67 5.93 -2.39 -0.01 0.66 16 37 H 0.18 1.13 5.95 -2.39 -0.01 1.11 16 38 H 0.17 1.78 7.69 -2.38 -0.02 1.76 16 39 H 0.21 4.54 8.06 -2.91 -0.02 4.52 16 40 H 0.14 2.93 7.88 -2.91 -0.02 2.91 16 41 H 0.16 1.37 8.06 -2.91 -0.02 1.35 16 42 H 0.17 0.93 8.06 -2.91 -0.02 0.90 16 43 H 0.16 1.73 6.23 -2.91 -0.02 1.71 16 44 H 0.04 2.05 2.32 -2.39 -0.01 2.05 16 45 H 0.07 2.80 8.14 -2.38 -0.02 2.78 16 Total: -1.00 -89.65 361.85 4.00 -85.64 By element: Atomic # 1 Polarization: 0.59 SS G_CDS: 0.95 Total: 1.55 kcal Atomic # 6 Polarization: -8.92 SS G_CDS: 5.20 Total: -3.72 kcal Atomic # 7 Polarization: -88.21 SS G_CDS: -3.68 Total: -91.89 kcal Atomic # 8 Polarization: -43.41 SS G_CDS: -0.14 Total: -43.55 kcal Atomic # 14 Polarization: 50.30 SS G_CDS: 1.67 Total: 51.97 kcal Total: -89.65 4.00 -85.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362947951.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.855 kcal (2) G-P(sol) polarization free energy of solvation -89.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds