Wall clock time and date at job start Sat Apr 11 2020 06:17:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86800 * 119.99698 * 2 1 4 4 H 1.48494 * 109.47384 * 264.79051 * 3 2 1 5 5 H 1.48505 * 109.47187 * 24.79340 * 3 2 1 6 6 H 1.48503 * 109.46693 * 144.78998 * 3 2 1 7 7 C 1.37875 * 119.99754 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00566 * 4.92802 * 7 2 1 9 9 C 1.50706 * 119.99632 * 184.92805 * 7 2 1 10 10 H 1.09001 * 109.52039 * 335.11547 * 9 7 2 11 11 C 1.53342 * 109.68436 * 214.94832 * 9 7 2 12 12 C 1.53041 * 109.60902 * 178.74625 * 11 9 7 13 13 C 1.53196 * 109.31344 * 61.37391 * 12 11 9 14 14 N 1.46930 * 108.77217 * 305.36593 * 13 12 11 15 15 C 1.34773 * 120.63259 * 233.62778 * 14 13 12 16 16 O 1.21279 * 120.00319 * 179.97438 * 15 14 13 17 17 C 1.50701 * 119.99772 * 359.97438 * 15 14 13 18 18 N 1.46497 * 109.47458 * 179.97438 * 17 15 14 19 19 N 1.28167 * 118.82166 * 269.74008 * 18 17 15 20 20 C 1.30049 * 124.55129 * 179.68393 * 19 18 17 21 21 C 1.42147 * 120.32074 * 0.57760 * 20 19 18 22 22 O 1.21978 * 121.72948 * 179.75409 * 21 20 19 23 23 C 1.47289 * 116.54433 * 359.72557 * 21 20 19 24 24 C 1.39288 * 122.37789 * 179.97438 * 23 21 20 25 25 C 1.36730 * 119.48444 * 180.02562 * 24 23 21 26 26 C 1.38918 * 120.58104 * 359.96537 * 25 24 23 27 27 C 1.37715 * 120.85057 * 0.02562 * 26 25 24 28 28 C 1.37217 * 118.81575 * 89.99512 * 18 17 15 29 29 C 1.46931 * 118.73703 * 53.61021 * 14 13 12 30 30 H 0.96997 * 119.99573 * 359.97438 * 1 2 3 31 31 H 1.09004 * 109.42069 * 58.70744 * 11 9 7 32 32 H 1.09001 * 109.43401 * 298.79250 * 11 9 7 33 33 H 1.08992 * 109.49939 * 301.42291 * 12 11 9 34 34 H 1.08995 * 109.50097 * 181.32166 * 12 11 9 35 35 H 1.08989 * 109.58870 * 185.57966 * 13 12 11 36 36 H 1.09002 * 109.58767 * 65.15088 * 13 12 11 37 37 H 1.09002 * 109.47187 * 300.00198 * 17 15 14 38 38 H 1.09000 * 109.47189 * 60.00146 * 17 15 14 39 39 H 1.08002 * 119.83903 * 180.28089 * 20 19 18 40 40 H 1.08004 * 120.25933 * 0.02562 * 24 23 21 41 41 H 1.08003 * 119.71044 * 179.97438 * 25 24 23 42 42 H 1.07994 * 119.56964 * 180.02562 * 26 25 24 43 43 H 1.08005 * 120.21052 * 180.02562 * 27 26 25 44 44 H 1.08998 * 109.58957 * 66.17668 * 29 14 13 45 45 H 1.09003 * 109.58382 * 186.45899 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.6067 1.9830 -1.3942 5 1 1.3958 2.6820 0.5871 6 1 3.4873 1.4745 0.8073 7 6 2.0046 -1.1941 -0.0005 8 1 1.4676 -2.1276 -0.0813 9 6 3.5074 -1.1965 0.1116 10 1 3.9013 -0.2472 -0.2516 11 6 4.0860 -2.3438 -0.7253 12 6 5.6136 -2.3256 -0.6353 13 6 6.0378 -2.5303 0.8224 14 7 5.3721 -1.5191 1.6550 15 6 6.0885 -0.7246 2.4747 16 8 5.5273 0.1067 3.1566 17 6 7.5869 -0.8690 2.5439 18 7 8.1275 0.1013 3.4991 19 7 8.4709 1.2608 3.0747 20 6 8.9563 2.2066 3.8238 21 6 9.1518 1.9909 5.2152 22 8 9.6093 2.8582 5.9407 23 6 8.7728 0.6661 5.7355 24 6 8.9134 0.3241 7.0784 25 6 8.5430 -0.9236 7.4975 26 6 8.0290 -1.8480 6.5968 27 6 7.8816 -1.5298 5.2651 28 6 8.2530 -0.2659 4.8153 29 6 3.9105 -1.3904 1.5767 30 1 -0.4849 0.8401 0.0004 31 1 3.7820 -2.2229 -1.7651 32 1 3.7112 -3.2944 -0.3458 33 1 5.9876 -1.3658 -0.9916 34 1 6.0239 -3.1271 -1.2495 35 1 7.1187 -2.4196 0.9075 36 1 5.7433 -3.5266 1.1522 37 1 7.8401 -1.8784 2.8681 38 1 8.0155 -0.6856 1.5586 39 1 9.2165 3.1589 3.3858 40 1 9.3119 1.0389 7.7832 41 1 8.6509 -1.1928 8.5378 42 1 7.7412 -2.8287 6.9456 43 1 7.4805 -2.2563 4.5739 44 1 3.4426 -2.2937 1.9680 45 1 3.5878 -0.5290 2.1616 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362947953.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:15 Heat of formation + Delta-G solvation = 13.093230 kcal Electronic energy + Delta-G solvation = -29840.418178 eV Core-core repulsion = 25824.073599 eV Total energy + Delta-G solvation = -4016.344579 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.07873 -39.92770 -38.54520 -38.27557 -37.06424 -34.12186 -33.46822 -32.05163 -31.49669 -31.05756 -30.64109 -28.52291 -25.36559 -25.22056 -24.59654 -24.48547 -22.05685 -21.99743 -20.11629 -19.45275 -18.97669 -18.68591 -17.68632 -17.34195 -16.83318 -16.12751 -15.76384 -15.54475 -15.33643 -15.04806 -14.67460 -14.56525 -14.23994 -14.03932 -13.97666 -13.91267 -13.50037 -12.99880 -12.98019 -12.80395 -12.64233 -12.48773 -12.44477 -12.20357 -11.86936 -11.45827 -11.34946 -11.18265 -10.81309 -10.68073 -10.24784 -10.19967 -9.84746 -9.79040 -9.57853 -9.46252 -9.43367 -9.22032 -8.66348 -8.27279 -8.05904 -6.18946 -4.20745 0.32737 0.63043 1.40607 1.86076 2.59832 2.75204 3.14722 3.26844 3.36843 3.43657 3.63691 3.87623 3.99151 4.27794 4.33408 4.36043 4.43127 4.58615 4.76587 4.84548 4.90567 4.91137 5.10371 5.11559 5.16635 5.27523 5.35295 5.37624 5.54082 5.65730 5.66091 5.83612 6.00064 6.01648 6.07792 6.11493 6.14080 6.28787 6.45264 6.47242 6.53959 6.64823 6.70927 7.14817 7.24044 7.39931 7.59307 7.64271 7.98431 8.23479 8.40072 8.85886 9.44164 10.93308 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.014175 B = 0.003309 C = 0.003088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1974.858258 B = 8459.766016 C = 9064.718063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.077 3.923 3 Si 0.871 3.129 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.261 1.261 7 C -0.517 4.517 8 H 0.076 0.924 9 C 0.007 3.993 10 H 0.035 0.965 11 C -0.106 4.106 12 C -0.138 4.138 13 C 0.105 3.895 14 N -0.602 5.602 15 C 0.489 3.511 16 O -0.526 6.526 17 C 0.096 3.904 18 N -0.319 5.319 19 N -0.172 5.172 20 C -0.045 4.045 21 C 0.393 3.607 22 O -0.479 6.479 23 C -0.206 4.206 24 C -0.026 4.026 25 C -0.158 4.158 26 C -0.050 4.050 27 C -0.163 4.163 28 C 0.167 3.833 29 C 0.114 3.886 30 H 0.266 0.734 31 H 0.061 0.939 32 H 0.055 0.945 33 H 0.062 0.938 34 H 0.067 0.933 35 H 0.071 0.929 36 H 0.072 0.928 37 H 0.126 0.874 38 H 0.132 0.868 39 H 0.194 0.806 40 H 0.140 0.860 41 H 0.132 0.868 42 H 0.135 0.865 43 H 0.135 0.865 44 H 0.064 0.936 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.843 -7.489 7.497 23.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.126 4.126 3 Si 0.699 3.301 4 H -0.201 1.201 5 H -0.214 1.214 6 H -0.185 1.185 7 C -0.555 4.555 8 H 0.094 0.906 9 C -0.013 4.013 10 H 0.053 0.947 11 C -0.144 4.144 12 C -0.177 4.177 13 C -0.018 4.018 14 N -0.336 5.336 15 C 0.273 3.727 16 O -0.402 6.402 17 C -0.028 4.028 18 N -0.118 5.118 19 N 0.003 4.997 20 C -0.242 4.242 21 C 0.276 3.724 22 O -0.356 6.356 23 C -0.211 4.211 24 C -0.044 4.044 25 C -0.177 4.177 26 C -0.069 4.069 27 C -0.185 4.185 28 C 0.063 3.937 29 C -0.007 4.007 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.074 0.926 33 H 0.081 0.919 34 H 0.086 0.914 35 H 0.089 0.911 36 H 0.090 0.910 37 H 0.144 0.856 38 H 0.150 0.850 39 H 0.210 0.790 40 H 0.158 0.842 41 H 0.150 0.850 42 H 0.153 0.847 43 H 0.153 0.847 44 H 0.082 0.918 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 20.340 -6.674 7.335 22.628 hybrid contribution 0.287 0.868 0.612 1.100 sum 20.627 -5.806 7.946 22.854 Atomic orbital electron populations 1.69896 1.06359 1.27300 1.49410 1.25071 0.94690 0.99044 0.93786 0.86931 0.80718 0.83690 0.78805 1.20136 1.21423 1.18509 1.20862 0.88560 0.94700 1.51364 0.90602 1.19516 0.96959 0.94798 0.90006 0.94701 1.21640 0.91552 1.00041 1.01153 1.22011 0.99233 1.01800 0.94610 1.21788 0.96067 0.91998 0.91930 1.48536 1.09607 1.35095 1.40321 1.20545 0.88613 0.82308 0.81204 1.90775 1.71532 1.34751 1.43188 1.22015 0.93792 0.92144 0.94884 1.43941 1.53072 1.09487 1.05305 1.70030 1.03843 0.91885 1.33924 1.25020 1.07096 0.98992 0.93051 1.19319 0.77016 0.86609 0.89505 1.90726 1.37820 1.45367 1.61662 1.20352 1.09391 0.96308 0.95095 1.20769 0.93890 0.96329 0.93437 1.20937 1.02426 0.93879 1.00425 1.21198 0.94098 0.99576 0.92045 1.20773 1.05554 0.94775 0.97370 1.18749 0.95860 0.94926 0.84142 1.22535 0.74481 1.02212 1.01426 0.92414 0.92026 0.92635 0.91934 0.91418 0.91062 0.90951 0.85632 0.85032 0.78980 0.84236 0.84961 0.84692 0.84687 0.91776 0.89970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.66 13.96 55.43 0.77 -25.89 16 2 C 0.08 2.17 5.47 -17.82 -0.10 2.08 16 3 Si 0.87 21.86 26.99 -169.99 -4.59 17.27 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -7.32 7.11 56.52 0.40 -6.91 16 6 H -0.26 -6.63 6.82 56.52 0.39 -6.24 16 7 C -0.52 -13.64 8.88 -34.44 -0.31 -13.94 16 8 H 0.08 2.15 8.06 -52.49 -0.42 1.73 16 9 C 0.01 0.15 1.93 -91.49 -0.18 -0.03 16 10 H 0.03 0.80 5.29 -51.93 -0.27 0.53 16 11 C -0.11 -1.80 5.17 -26.53 -0.14 -1.94 16 12 C -0.14 -1.71 6.08 -26.61 -0.16 -1.88 16 13 C 0.11 1.13 6.34 -3.71 -0.02 1.11 16 14 N -0.60 -9.33 2.97 -172.76 -0.51 -9.84 16 15 C 0.49 7.75 7.77 -10.99 -0.09 7.66 16 16 O -0.53 -11.10 15.84 5.56 0.09 -11.01 16 17 C 0.10 1.03 4.13 -5.19 -0.02 1.01 16 18 N -0.32 -4.18 2.78 -59.83 -0.17 -4.35 16 19 N -0.17 -2.40 10.73 30.98 0.33 -2.07 16 20 C -0.04 -0.59 11.34 -16.81 -0.19 -0.78 16 21 C 0.39 5.74 7.01 -34.40 -0.24 5.50 16 22 O -0.48 -7.89 17.52 4.94 0.09 -7.80 16 23 C -0.21 -2.79 5.90 -104.81 -0.62 -3.41 16 24 C -0.03 -0.29 9.66 -39.74 -0.38 -0.67 16 25 C -0.16 -1.40 9.98 -39.87 -0.40 -1.80 16 26 C -0.05 -0.43 10.00 -39.52 -0.40 -0.82 16 27 C -0.16 -1.67 9.20 -39.42 -0.36 -2.03 16 28 C 0.17 2.14 6.56 -84.09 -0.55 1.59 16 29 C 0.11 2.28 5.69 -3.71 -0.02 2.26 16 30 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 31 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 33 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.07 0.50 5.93 -51.94 -0.31 0.19 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.13 0.85 5.97 -51.93 -0.31 0.54 16 38 H 0.13 1.11 7.68 -51.93 -0.40 0.72 16 39 H 0.19 2.01 8.06 -52.49 -0.42 1.58 16 40 H 0.14 1.43 7.88 -52.48 -0.41 1.02 16 41 H 0.13 0.80 8.06 -52.48 -0.42 0.38 16 42 H 0.14 0.75 8.06 -52.49 -0.42 0.33 16 43 H 0.14 1.10 6.23 -52.48 -0.33 0.77 16 44 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 45 H 0.08 1.93 7.00 -51.93 -0.36 1.57 16 LS Contribution 368.31 15.07 5.55 5.55 Total: -1.00 -35.94 368.31 -8.38 -44.32 By element: Atomic # 1 Polarization: 5.68 SS G_CDS: -5.78 Total: -0.09 kcal Atomic # 6 Polarization: -1.92 SS G_CDS: -4.17 Total: -6.09 kcal Atomic # 7 Polarization: -42.57 SS G_CDS: 0.43 Total: -42.15 kcal Atomic # 8 Polarization: -18.99 SS G_CDS: 0.17 Total: -18.81 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.59 Total: 17.27 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -35.94 -8.38 -44.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362947953.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.415 kcal (2) G-P(sol) polarization free energy of solvation -35.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.322 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds