Wall clock time and date at job start Sat Apr 11 2020 06:17:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31352 * 1 3 3 Si 1.86802 * 119.99995 * 2 1 4 4 H 1.48502 * 109.47088 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47197 * 299.99719 * 3 2 1 6 6 H 1.48498 * 109.47030 * 59.99753 * 3 2 1 7 7 C 1.39006 * 119.99978 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00390 * 195.19744 * 7 2 1 9 9 N 1.36889 * 120.00057 * 15.19545 * 7 2 1 10 10 C 1.38214 * 125.62119 * 220.54635 * 9 7 2 11 11 C 1.46885 * 125.43654 * 0.04383 * 10 9 7 12 12 O 1.21667 * 119.99920 * 354.05301 * 11 10 9 13 13 N 1.34777 * 120.00009 * 174.04924 * 11 10 9 14 14 C 1.47584 * 134.49260 * 174.91025 * 13 11 10 15 15 C 1.53947 * 86.11300 * 155.36183 * 14 13 11 16 16 N 1.46905 * 113.74008 * 137.95616 * 15 14 13 17 17 C 1.46903 * 111.00136 * 154.99623 * 16 15 14 18 18 C 1.54036 * 113.81285 * 154.99958 * 17 16 15 19 19 O 1.44180 * 85.65954 * 136.73950 * 18 17 16 20 20 C 1.44438 * 93.22745 * 335.92517 * 19 18 17 21 21 C 1.47578 * 134.49167 * 354.91217 * 13 11 10 22 22 C 1.36126 * 109.12535 * 179.77510 * 10 9 7 23 23 C 1.41699 * 107.74894 * 0.23101 * 22 10 9 24 24 C 1.40023 * 133.35074 * 180.02562 * 23 22 10 25 25 C 1.36578 * 119.83216 * 179.97438 * 24 23 22 26 26 C 1.38857 * 120.59745 * 359.97438 * 25 24 23 27 27 C 1.37840 * 120.63727 * 0.04199 * 26 25 24 28 28 C 1.37840 * 125.62113 * 40.72926 * 9 7 2 29 29 H 0.97004 * 119.99501 * 4.92626 * 1 2 3 30 30 H 1.08996 * 113.76691 * 41.06402 * 14 13 11 31 31 H 1.08996 * 113.76743 * 269.66136 * 14 13 11 32 32 H 1.09001 * 113.74034 * 269.15134 * 15 14 13 33 33 H 1.00898 * 110.99744 * 278.95278 * 16 15 14 34 34 H 1.08996 * 113.08226 * 23.09440 * 17 16 15 35 35 H 1.09003 * 113.85956 * 250.94902 * 18 17 16 36 36 H 1.08997 * 113.86900 * 22.52708 * 18 17 16 37 37 H 1.09003 * 113.74879 * 269.91504 * 20 19 18 38 38 H 1.09000 * 114.05590 * 138.26931 * 20 19 18 39 39 H 1.09006 * 113.76941 * 90.33678 * 21 13 11 40 40 H 1.09004 * 113.77529 * 318.94355 * 21 13 11 41 41 H 1.08004 * 126.12604 * 180.25038 * 22 10 9 42 42 H 1.07998 * 120.08456 * 359.93789 * 24 23 22 43 43 H 1.08000 * 119.70177 * 179.97438 * 25 24 23 44 44 H 1.08005 * 119.68320 * 180.02562 * 26 25 24 45 45 H 1.07996 * 120.09696 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3135 0.0000 0.0000 3 14 2.2475 1.6178 0.0000 4 1 3.7075 1.3464 0.0006 5 1 1.8888 2.3965 -1.2126 6 1 1.8887 2.3965 1.2125 7 6 2.0085 -1.2038 0.0005 8 1 3.0603 -1.2202 0.2457 9 7 1.3600 -2.3687 -0.3097 10 6 1.5393 -3.5835 0.3249 11 6 2.4578 -3.8325 1.4437 12 8 3.2170 -2.9568 1.8140 13 7 2.4595 -5.0310 2.0602 14 6 3.2819 -5.6483 3.1188 15 6 2.0612 -6.5433 3.3998 16 7 2.4037 -7.9504 3.6462 17 6 1.3713 -8.6093 4.4574 18 6 1.3083 -10.1361 4.2634 19 8 1.1777 -10.2028 5.6977 20 6 1.8185 -8.9239 5.8974 21 6 1.6398 -6.2530 1.9479 22 6 0.7243 -4.5108 -0.2487 23 6 0.0043 -3.8698 -1.2872 24 6 -0.9589 -4.3106 -2.2029 25 6 -1.4853 -3.4352 -3.1096 26 6 -1.0745 -2.1090 -3.1323 27 6 -0.1275 -1.6516 -2.2412 28 6 0.4231 -2.5245 -1.3087 29 1 -0.4849 0.8370 -0.0721 30 1 3.5270 -4.9703 3.9363 31 1 4.1478 -6.1922 2.7413 32 1 1.3801 -6.1347 4.1463 33 1 2.5515 -8.4439 2.7786 34 1 0.4007 -8.1173 4.3955 35 1 0.4242 -10.4759 3.7238 36 1 2.2329 -10.5710 3.8841 37 1 2.8998 -8.9890 6.0191 38 1 1.3409 -8.3008 6.6535 39 1 2.0234 -6.9745 1.2264 40 1 0.5738 -6.0579 1.8305 41 1 0.6413 -5.5491 0.0368 42 1 -1.2844 -5.3403 -2.1928 43 1 -2.2278 -3.7776 -3.8152 44 1 -1.5008 -1.4293 -3.8553 45 1 0.1860 -0.6185 -2.2669 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001363645867.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:17 Heat of formation + Delta-G solvation = 66.913824 kcal Electronic energy + Delta-G solvation = -29161.320920 eV Core-core repulsion = 25147.310177 eV Total energy + Delta-G solvation = -4014.010743 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.80727 -40.45508 -39.57232 -37.32538 -35.77152 -34.16500 -33.58950 -30.80873 -29.63604 -28.98463 -28.09450 -26.87624 -26.54013 -26.13797 -24.80359 -22.88258 -21.30324 -20.88271 -20.50973 -19.83349 -18.84423 -17.80715 -17.14809 -16.68270 -16.39940 -16.15229 -15.87154 -15.51648 -15.30838 -14.78685 -14.68046 -14.07210 -13.97027 -13.58541 -13.28441 -13.02094 -12.99960 -12.93518 -12.89222 -12.68944 -12.36108 -12.11539 -11.96442 -11.75800 -11.55326 -11.32763 -11.24317 -11.15392 -11.02309 -10.75581 -10.50760 -10.24278 -10.01177 -9.82915 -9.24096 -9.12963 -8.84228 -8.63312 -8.41982 -7.18048 -6.85208 -6.53660 -4.43807 1.80419 2.75045 2.92979 3.01865 3.07723 3.12059 3.15015 3.37564 3.75939 3.86251 3.88830 4.19780 4.29878 4.50603 4.67496 4.72830 4.87609 4.93593 5.01763 5.07264 5.08419 5.21083 5.28054 5.39725 5.45884 5.49553 5.66967 5.72742 5.78219 5.79038 5.89569 5.94116 6.05139 6.19696 6.31158 6.53566 6.61395 6.69923 6.85158 6.88913 7.01212 7.08074 7.18560 7.47399 7.56260 7.68236 7.90788 7.99088 8.10617 8.44546 8.70820 8.93700 9.32894 10.24727 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.013449 B = 0.002974 C = 0.002534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2081.465847 B = 9411.781799 C =11045.165223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.051 3.949 3 Si 0.930 3.070 4 H -0.260 1.260 5 H -0.272 1.272 6 H -0.274 1.274 7 C -0.334 4.334 8 H 0.118 0.882 9 N -0.230 5.230 10 C -0.018 4.018 11 C 0.613 3.387 12 O -0.528 6.528 13 N -0.642 5.642 14 C 0.123 3.877 15 C 0.050 3.950 16 N -0.665 5.665 17 C 0.015 3.985 18 C 0.032 3.968 19 O -0.384 6.384 20 C 0.045 3.955 21 C 0.078 3.922 22 C -0.210 4.210 23 C -0.125 4.125 24 C -0.093 4.093 25 C -0.155 4.155 26 C -0.154 4.154 27 C -0.048 4.048 28 C 0.087 3.913 29 H 0.280 0.720 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.110 0.890 33 H 0.351 0.649 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.087 0.913 37 H 0.090 0.910 38 H 0.089 0.911 39 H 0.083 0.917 40 H 0.088 0.912 41 H 0.127 0.873 42 H 0.102 0.898 43 H 0.102 0.898 44 H 0.105 0.895 45 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.711 -14.574 4.137 15.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.161 4.161 3 Si 0.754 3.246 4 H -0.184 1.184 5 H -0.198 1.198 6 H -0.200 1.200 7 C -0.463 4.463 8 H 0.135 0.865 9 N 0.110 4.890 10 C -0.136 4.136 11 C 0.406 3.594 12 O -0.404 6.404 13 N -0.380 5.380 14 C 0.000 4.000 15 C -0.061 4.061 16 N -0.298 5.298 17 C -0.095 4.095 18 C -0.045 4.045 19 O -0.302 6.302 20 C -0.033 4.033 21 C -0.047 4.047 22 C -0.238 4.238 23 C -0.129 4.129 24 C -0.112 4.112 25 C -0.174 4.174 26 C -0.174 4.174 27 C -0.067 4.067 28 C -0.028 4.028 29 H 0.091 0.909 30 H 0.100 0.900 31 H 0.103 0.897 32 H 0.128 0.872 33 H 0.172 0.828 34 H 0.109 0.891 35 H 0.109 0.891 36 H 0.105 0.895 37 H 0.108 0.892 38 H 0.107 0.893 39 H 0.101 0.899 40 H 0.106 0.894 41 H 0.145 0.855 42 H 0.120 0.880 43 H 0.120 0.880 44 H 0.123 0.877 45 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 1.443 -13.463 5.163 14.491 hybrid contribution -0.507 0.912 -0.777 1.301 sum 0.936 -12.550 4.386 13.328 Atomic orbital electron populations 1.70015 1.06376 1.29468 1.39579 1.25689 0.95459 1.00737 0.94243 0.85807 0.80402 0.79974 0.78401 1.18377 1.19757 1.19964 1.20115 0.95571 0.82128 1.48476 0.86480 1.39936 1.25565 1.05751 1.17790 1.19519 1.05227 0.89251 0.99555 1.16847 0.82142 0.79867 0.80552 1.90781 1.41870 1.42619 1.65163 1.49296 1.35786 1.12228 1.40739 1.23104 0.94621 0.92616 0.89641 1.23825 0.97675 0.88296 0.96264 1.60587 1.43735 1.02115 1.23394 1.25018 0.95143 0.94321 0.95015 1.24258 1.02467 0.94131 0.83685 1.89754 1.78901 1.40404 1.21101 1.24229 0.98921 0.83620 0.96520 1.23978 0.98100 0.86319 0.96319 1.20472 1.02905 0.98018 1.02369 1.17957 1.01408 0.93554 0.99985 1.20003 0.97359 0.98083 0.95779 1.20269 1.02346 0.94111 1.00676 1.20543 1.00259 0.95680 1.00965 1.20102 0.95674 0.98013 0.92929 1.18177 0.97679 0.93927 0.92979 0.90945 0.90022 0.89692 0.87179 0.82818 0.89139 0.89102 0.89509 0.89162 0.89310 0.89863 0.89371 0.85545 0.87979 0.87974 0.87684 0.86911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -22.03 10.95 55.50 0.61 -21.42 16 2 C 0.05 1.32 4.52 -17.47 -0.08 1.24 16 3 Si 0.93 19.98 29.58 -169.99 -5.03 14.95 16 4 H -0.26 -5.58 7.11 56.52 0.40 -5.17 16 5 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 6 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 7 C -0.33 -9.22 8.80 -15.01 -0.13 -9.35 16 8 H 0.12 3.31 6.89 -52.48 -0.36 2.95 16 9 N -0.23 -6.19 2.82 -56.08 -0.16 -6.35 16 10 C -0.02 -0.44 6.76 -82.25 -0.56 -1.00 16 11 C 0.61 13.76 8.00 -12.76 -0.10 13.66 16 12 O -0.53 -13.63 15.72 5.22 0.08 -13.55 16 13 N -0.64 -10.50 3.60 -180.02 -0.65 -11.15 16 14 C 0.12 1.52 8.64 -2.97 -0.03 1.49 16 15 C 0.05 0.48 4.26 -69.93 -0.30 0.18 16 16 N -0.67 -4.79 6.70 -107.82 -0.72 -5.51 16 17 C 0.02 0.11 4.27 -66.63 -0.28 -0.18 16 18 C 0.03 0.22 8.79 37.61 0.33 0.55 16 19 O -0.38 -3.76 12.47 -35.23 -0.44 -4.19 16 20 C 0.04 0.35 9.02 37.60 0.34 0.69 16 21 C 0.08 0.89 6.27 -2.98 -0.02 0.87 16 22 C -0.21 -4.50 9.83 -39.02 -0.38 -4.88 16 23 C -0.12 -2.87 6.16 -106.89 -0.66 -3.52 16 24 C -0.09 -1.86 10.06 -39.51 -0.40 -2.25 16 25 C -0.15 -2.96 9.97 -39.95 -0.40 -3.36 16 26 C -0.15 -3.16 10.02 -39.50 -0.40 -3.56 16 27 C -0.05 -1.14 8.57 -39.41 -0.34 -1.48 16 28 C 0.09 2.23 6.06 -83.83 -0.51 1.72 16 29 H 0.28 6.89 8.31 -40.82 -0.34 6.55 16 30 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 31 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.11 1.07 7.76 -51.93 -0.40 0.66 16 33 H 0.35 2.08 8.01 -39.29 -0.31 1.77 16 34 H 0.09 0.64 7.76 -51.93 -0.40 0.24 16 35 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 38 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.08 0.79 7.82 -51.93 -0.41 0.38 16 40 H 0.09 1.05 6.95 -51.93 -0.36 0.69 16 41 H 0.13 2.18 5.34 -52.48 -0.28 1.90 16 42 H 0.10 1.70 8.06 -52.49 -0.42 1.28 16 43 H 0.10 1.61 8.06 -52.49 -0.42 1.18 16 44 H 0.11 1.86 8.06 -52.48 -0.42 1.43 16 45 H 0.11 2.78 6.57 -52.49 -0.35 2.43 16 LS Contribution 371.63 15.07 5.60 5.60 Total: -1.00 -32.98 371.63 -10.43 -43.41 By element: Atomic # 1 Polarization: 13.21 SS G_CDS: -5.82 Total: 7.40 kcal Atomic # 6 Polarization: -5.27 SS G_CDS: -3.91 Total: -9.18 kcal Atomic # 7 Polarization: -43.51 SS G_CDS: -0.92 Total: -44.43 kcal Atomic # 8 Polarization: -17.39 SS G_CDS: -0.36 Total: -17.74 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -5.03 Total: 14.95 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.98 -10.43 -43.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363645867.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.320 kcal (2) G-P(sol) polarization free energy of solvation -32.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.407 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds