Wall clock time and date at job start Sat Apr 11 2020 06:17:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31352 * 1 3 3 Si 1.86802 * 119.99995 * 2 1 4 4 H 1.48502 * 109.47088 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47197 * 299.99719 * 3 2 1 6 6 H 1.48498 * 109.47030 * 59.99753 * 3 2 1 7 7 C 1.39006 * 119.99978 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00390 * 195.19744 * 7 2 1 9 9 N 1.36889 * 120.00057 * 15.19545 * 7 2 1 10 10 C 1.38214 * 125.62119 * 220.54635 * 9 7 2 11 11 C 1.46885 * 125.43654 * 0.04383 * 10 9 7 12 12 O 1.21667 * 119.99920 * 354.05301 * 11 10 9 13 13 N 1.34777 * 120.00009 * 174.04924 * 11 10 9 14 14 C 1.47584 * 134.49260 * 174.91025 * 13 11 10 15 15 C 1.53947 * 86.11300 * 155.36183 * 14 13 11 16 16 N 1.46905 * 113.74008 * 137.95616 * 15 14 13 17 17 C 1.46903 * 111.00136 * 154.99623 * 16 15 14 18 18 C 1.54036 * 113.81285 * 154.99958 * 17 16 15 19 19 O 1.44180 * 85.65954 * 136.73950 * 18 17 16 20 20 C 1.44438 * 93.22745 * 335.92517 * 19 18 17 21 21 C 1.47578 * 134.49167 * 354.91217 * 13 11 10 22 22 C 1.36126 * 109.12535 * 179.77510 * 10 9 7 23 23 C 1.41699 * 107.74894 * 0.23101 * 22 10 9 24 24 C 1.40023 * 133.35074 * 180.02562 * 23 22 10 25 25 C 1.36578 * 119.83216 * 179.97438 * 24 23 22 26 26 C 1.38857 * 120.59745 * 359.97438 * 25 24 23 27 27 C 1.37840 * 120.63727 * 0.04199 * 26 25 24 28 28 C 1.37840 * 125.62113 * 40.72926 * 9 7 2 29 29 H 0.97004 * 119.99501 * 4.92626 * 1 2 3 30 30 H 1.08996 * 113.76691 * 41.06402 * 14 13 11 31 31 H 1.08996 * 113.76743 * 269.66136 * 14 13 11 32 32 H 1.09001 * 113.74034 * 269.15134 * 15 14 13 33 33 H 1.00898 * 110.99744 * 278.95278 * 16 15 14 34 34 H 1.08996 * 113.08226 * 23.09440 * 17 16 15 35 35 H 1.09003 * 113.85956 * 250.94902 * 18 17 16 36 36 H 1.08997 * 113.86900 * 22.52708 * 18 17 16 37 37 H 1.09003 * 113.74879 * 269.91504 * 20 19 18 38 38 H 1.09000 * 114.05590 * 138.26931 * 20 19 18 39 39 H 1.09006 * 113.76941 * 90.33678 * 21 13 11 40 40 H 1.09004 * 113.77529 * 318.94355 * 21 13 11 41 41 H 1.08004 * 126.12604 * 180.25038 * 22 10 9 42 42 H 1.07998 * 120.08456 * 359.93789 * 24 23 22 43 43 H 1.08000 * 119.70177 * 179.97438 * 25 24 23 44 44 H 1.08005 * 119.68320 * 180.02562 * 26 25 24 45 45 H 1.07996 * 120.09696 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3135 0.0000 0.0000 3 14 2.2475 1.6178 0.0000 4 1 3.7075 1.3464 0.0006 5 1 1.8888 2.3965 -1.2126 6 1 1.8887 2.3965 1.2125 7 6 2.0085 -1.2038 0.0005 8 1 3.0603 -1.2202 0.2457 9 7 1.3600 -2.3687 -0.3097 10 6 1.5393 -3.5835 0.3249 11 6 2.4578 -3.8325 1.4437 12 8 3.2170 -2.9568 1.8140 13 7 2.4595 -5.0310 2.0602 14 6 3.2819 -5.6483 3.1188 15 6 2.0612 -6.5433 3.3998 16 7 2.4037 -7.9504 3.6462 17 6 1.3713 -8.6093 4.4574 18 6 1.3083 -10.1361 4.2634 19 8 1.1777 -10.2028 5.6977 20 6 1.8185 -8.9239 5.8974 21 6 1.6398 -6.2530 1.9479 22 6 0.7243 -4.5108 -0.2487 23 6 0.0043 -3.8698 -1.2872 24 6 -0.9589 -4.3106 -2.2029 25 6 -1.4853 -3.4352 -3.1096 26 6 -1.0745 -2.1090 -3.1323 27 6 -0.1275 -1.6516 -2.2412 28 6 0.4231 -2.5245 -1.3087 29 1 -0.4849 0.8370 -0.0721 30 1 3.5270 -4.9703 3.9363 31 1 4.1478 -6.1922 2.7413 32 1 1.3801 -6.1347 4.1463 33 1 2.5515 -8.4439 2.7786 34 1 0.4007 -8.1173 4.3955 35 1 0.4242 -10.4759 3.7238 36 1 2.2329 -10.5710 3.8841 37 1 2.8998 -8.9890 6.0191 38 1 1.3409 -8.3008 6.6535 39 1 2.0234 -6.9745 1.2264 40 1 0.5738 -6.0579 1.8305 41 1 0.6413 -5.5491 0.0368 42 1 -1.2844 -5.3403 -2.1928 43 1 -2.2278 -3.7776 -3.8152 44 1 -1.5008 -1.4293 -3.8553 45 1 0.1860 -0.6185 -2.2669 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001363645867.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:16 Heat of formation + Delta-G solvation = 43.196605 kcal Electronic energy + Delta-G solvation = -29162.349376 eV Core-core repulsion = 25147.310177 eV Total energy + Delta-G solvation = -4015.039199 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.24836 -41.39544 -40.72605 -38.83674 -37.43808 -35.54386 -34.92252 -32.56912 -30.96634 -30.67895 -29.31543 -27.61920 -27.39181 -27.28824 -26.58660 -24.36850 -22.74663 -22.07940 -21.55740 -21.21979 -20.27143 -19.48743 -17.90280 -17.80382 -17.58503 -17.21463 -17.13625 -16.97804 -16.49440 -16.36755 -16.18159 -15.55418 -15.20287 -14.95788 -14.65478 -14.61920 -14.37638 -14.20021 -13.79255 -13.65587 -13.60850 -13.51158 -13.44779 -13.12334 -13.03382 -12.92250 -12.39796 -12.37450 -12.19208 -11.99785 -11.92739 -11.80547 -11.47796 -10.98975 -10.88008 -10.60638 -10.39289 -9.75388 -9.52135 -8.98244 -8.63568 -8.31471 -6.42297 0.12784 1.08630 1.26833 1.32155 1.41443 1.43247 1.66037 2.11238 2.45710 2.82718 2.86810 2.95849 3.06029 3.32795 3.36373 3.40507 3.66096 4.03064 4.14752 4.16604 4.23272 4.41131 4.41931 4.47266 4.50123 4.53655 4.56681 4.67699 4.69378 4.72903 4.75667 4.84314 4.87869 5.03838 5.06934 5.15617 5.18305 5.23866 5.24119 5.36559 5.44867 5.75694 5.90333 5.91778 5.96189 6.24416 6.32598 6.36636 6.57104 6.61913 6.93449 7.25504 7.46751 8.36369 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.013449 B = 0.002974 C = 0.002534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2081.465847 B = 9411.781799 C =11045.165223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.857 5.857 2 C 0.014 3.986 3 Si 0.992 3.008 4 H -0.267 1.267 5 H -0.255 1.255 6 H -0.269 1.269 7 C -0.366 4.366 8 H 0.090 0.910 9 N -0.268 5.268 10 C -0.051 4.051 11 C 0.602 3.398 12 O -0.584 6.584 13 N -0.642 5.642 14 C 0.115 3.885 15 C 0.080 3.920 16 N -0.656 5.656 17 C 0.021 3.979 18 C 0.035 3.965 19 O -0.413 6.413 20 C 0.039 3.961 21 C 0.074 3.926 22 C -0.182 4.182 23 C -0.151 4.151 24 C -0.084 4.084 25 C -0.155 4.155 26 C -0.136 4.136 27 C -0.092 4.092 28 C 0.061 3.939 29 H 0.283 0.717 30 H 0.069 0.931 31 H 0.103 0.897 32 H 0.111 0.889 33 H 0.364 0.636 34 H 0.094 0.906 35 H 0.105 0.895 36 H 0.099 0.901 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.115 0.885 40 H 0.089 0.911 41 H 0.172 0.828 42 H 0.146 0.854 43 H 0.149 0.851 44 H 0.133 0.867 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.963 -17.792 3.107 18.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.488 5.488 2 C -0.194 4.194 3 Si 0.812 3.188 4 H -0.191 1.191 5 H -0.179 1.179 6 H -0.194 1.194 7 C -0.494 4.494 8 H 0.108 0.892 9 N 0.070 4.930 10 C -0.167 4.167 11 C 0.394 3.606 12 O -0.465 6.465 13 N -0.378 5.378 14 C -0.007 4.007 15 C -0.031 4.031 16 N -0.290 5.290 17 C -0.089 4.089 18 C -0.042 4.042 19 O -0.332 6.332 20 C -0.038 4.038 21 C -0.049 4.049 22 C -0.210 4.210 23 C -0.155 4.155 24 C -0.102 4.102 25 C -0.174 4.174 26 C -0.157 4.157 27 C -0.112 4.112 28 C -0.054 4.054 29 H 0.093 0.907 30 H 0.088 0.912 31 H 0.121 0.879 32 H 0.129 0.871 33 H 0.186 0.814 34 H 0.112 0.888 35 H 0.123 0.877 36 H 0.117 0.883 37 H 0.110 0.890 38 H 0.110 0.890 39 H 0.133 0.867 40 H 0.108 0.892 41 H 0.189 0.811 42 H 0.163 0.837 43 H 0.166 0.834 44 H 0.151 0.849 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -0.242 -16.773 4.147 17.279 hybrid contribution -0.062 1.612 -0.493 1.687 sum -0.305 -15.161 3.654 15.598 Atomic orbital electron populations 1.70078 1.07417 1.30171 1.41117 1.26457 0.96224 1.03221 0.93503 0.84935 0.78619 0.76161 0.79052 1.19064 1.17938 1.19387 1.19938 0.94881 0.83851 1.50696 0.89245 1.40115 1.27214 1.06246 1.19441 1.20223 1.06430 0.89231 1.00768 1.16943 0.81599 0.81400 0.80666 1.90728 1.43937 1.45051 1.66748 1.49412 1.36785 1.11657 1.39945 1.23439 0.96289 0.92698 0.88279 1.23424 0.95438 0.89247 0.95042 1.60482 1.43688 1.00774 1.24098 1.24959 0.94958 0.94659 0.94302 1.24427 1.03761 0.93617 0.82408 1.89734 1.79253 1.41221 1.22978 1.24331 0.99013 0.83155 0.97297 1.24399 0.97747 0.84297 0.98494 1.20968 1.00379 0.99281 1.00345 1.18470 1.02866 0.92680 1.01507 1.20502 0.95350 1.00295 0.94078 1.20774 1.02597 0.92983 1.01038 1.20999 0.97938 0.97244 0.99489 1.20167 0.98538 0.97312 0.95191 1.18766 0.97639 0.95790 0.93167 0.90708 0.91197 0.87864 0.87093 0.81359 0.88783 0.87727 0.88325 0.89024 0.88990 0.86722 0.89234 0.81108 0.83658 0.83365 0.84872 0.89216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -48.35 10.95 21.67 0.24 -48.12 16 2 C 0.01 0.77 4.52 84.95 0.38 1.16 16 3 Si 0.99 43.54 29.58 68.60 2.03 45.57 16 4 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 5 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 6 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 7 C -0.37 -21.81 8.80 84.09 0.74 -21.07 16 8 H 0.09 5.61 6.89 -2.91 -0.02 5.59 16 9 N -0.27 -15.25 2.82 -331.34 -0.93 -16.18 16 10 C -0.05 -2.55 6.76 39.91 0.27 -2.28 16 11 C 0.60 28.17 8.00 86.51 0.69 28.87 16 12 O -0.58 -32.41 15.72 -4.24 -0.07 -32.47 16 13 N -0.64 -20.67 3.60 -841.70 -3.03 -23.70 16 14 C 0.11 2.70 8.64 86.48 0.75 3.45 16 15 C 0.08 1.30 4.26 46.67 0.20 1.50 16 16 N -0.66 -7.16 6.70 -505.38 -3.39 -10.55 16 17 C 0.02 0.23 4.27 45.61 0.19 0.43 16 18 C 0.03 0.36 8.79 72.27 0.64 0.99 16 19 O -0.41 -7.27 12.47 -148.98 -1.86 -9.12 16 20 C 0.04 0.53 9.02 72.27 0.65 1.19 16 21 C 0.07 1.46 6.27 86.48 0.54 2.00 16 22 C -0.18 -7.57 9.83 22.63 0.22 -7.35 16 23 C -0.15 -6.74 6.16 -21.34 -0.13 -6.87 16 24 C -0.08 -3.00 10.06 22.31 0.22 -2.77 16 25 C -0.16 -5.28 9.97 22.03 0.22 -5.06 16 26 C -0.14 -5.37 10.02 22.32 0.22 -5.15 16 27 C -0.09 -4.53 8.57 22.38 0.19 -4.34 16 28 C 0.06 3.21 6.06 39.06 0.24 3.44 16 29 H 0.28 14.65 8.31 -92.71 -0.77 13.88 16 30 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.10 2.08 8.14 -2.39 -0.02 2.07 16 32 H 0.11 1.88 7.76 -2.39 -0.02 1.86 16 33 H 0.36 2.70 8.01 -89.70 -0.72 1.98 16 34 H 0.09 1.03 7.76 -2.39 -0.02 1.01 16 35 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 37 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.12 1.62 7.82 -2.38 -0.02 1.60 16 40 H 0.09 1.81 6.95 -2.38 -0.02 1.79 16 41 H 0.17 5.24 5.34 -2.91 -0.02 5.23 16 42 H 0.15 3.92 8.06 -2.91 -0.02 3.90 16 43 H 0.15 3.72 8.06 -2.91 -0.02 3.70 16 44 H 0.13 4.36 8.06 -2.91 -0.02 4.34 16 45 H 0.09 4.71 6.57 -2.91 -0.02 4.69 16 Total: -1.00 -80.13 371.63 -0.45 -80.58 By element: Atomic # 1 Polarization: 25.55 SS G_CDS: 0.32 Total: 25.87 kcal Atomic # 6 Polarization: -18.11 SS G_CDS: 6.24 Total: -11.87 kcal Atomic # 7 Polarization: -91.43 SS G_CDS: -7.12 Total: -98.54 kcal Atomic # 8 Polarization: -39.67 SS G_CDS: -1.92 Total: -41.60 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.57 kcal Total: -80.13 -0.45 -80.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363645867.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.778 kcal (2) G-P(sol) polarization free energy of solvation -80.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.581 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds