Wall clock time and date at job start Sat Apr 11 2020 06:17:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31347 * 1 3 3 Si 1.86802 * 119.99598 * 2 1 4 4 H 1.48504 * 109.47284 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47550 * 300.00742 * 3 2 1 6 6 H 1.48505 * 109.47094 * 60.00780 * 3 2 1 7 7 C 1.39006 * 120.00551 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00117 * 173.82662 * 7 2 1 9 9 N 1.36896 * 119.99561 * 353.82531 * 7 2 1 10 10 C 1.38213 * 125.61842 * 135.47812 * 9 7 2 11 11 C 1.46890 * 125.43752 * 359.94566 * 10 9 7 12 12 O 1.21662 * 120.00350 * 173.97363 * 11 10 9 13 13 N 1.34778 * 120.00072 * 354.24470 * 11 10 9 14 14 C 1.46500 * 120.00149 * 184.69167 * 13 11 10 15 15 C 1.53782 * 113.61281 * 257.62966 * 14 13 11 16 16 C 1.53953 * 87.02047 * 220.04883 * 15 14 13 17 17 C 1.53000 * 113.66608 * 139.93322 * 16 15 14 18 18 C 1.50705 * 109.47023 * 87.44050 * 17 16 15 19 19 N 1.34775 * 119.99752 * 180.02562 * 18 17 16 20 20 O 1.21280 * 119.99988 * 359.97438 * 18 17 16 21 21 C 1.53777 * 113.61330 * 160.02756 * 14 13 11 22 22 C 1.36123 * 109.12639 * 180.20276 * 10 9 7 23 23 C 1.41700 * 107.74599 * 359.62257 * 22 10 9 24 24 C 1.40020 * 133.34701 * 180.13080 * 23 22 10 25 25 C 1.36582 * 119.83016 * 180.28826 * 24 23 22 26 26 C 1.38862 * 120.59985 * 359.97438 * 25 24 23 27 27 C 1.37845 * 120.63126 * 359.97438 * 26 25 24 28 28 C 1.37832 * 125.62117 * 315.43389 * 9 7 2 29 29 H 0.96996 * 120.00070 * 4.99618 * 1 2 3 30 30 H 0.97007 * 119.99646 * 4.69054 * 13 11 10 31 31 H 1.08994 * 112.85184 * 28.82963 * 14 13 11 32 32 H 1.09001 * 113.61377 * 334.57405 * 15 14 13 33 33 H 1.09005 * 113.61416 * 105.46819 * 15 14 13 34 34 H 1.08999 * 113.61198 * 270.79692 * 16 15 14 35 35 H 1.08999 * 109.47520 * 207.43737 * 17 16 15 36 36 H 1.09000 * 109.47411 * 327.44368 * 17 16 15 37 37 H 0.97000 * 120.00258 * 359.97438 * 19 18 17 38 38 H 0.97004 * 119.99422 * 180.02562 * 19 18 17 39 39 H 1.09002 * 113.61450 * 254.52669 * 21 14 13 40 40 H 1.08994 * 113.62018 * 25.34575 * 21 14 13 41 41 H 1.07999 * 126.12387 * 179.71459 * 22 10 9 42 42 H 1.08001 * 120.09081 * 0.26477 * 24 23 22 43 43 H 1.08002 * 119.70450 * 180.02562 * 25 24 23 44 44 H 1.07999 * 119.68113 * 179.97438 * 26 25 24 45 45 H 1.07997 * 120.09595 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3135 0.0000 0.0000 3 14 2.2474 1.6178 0.0000 4 1 3.7074 1.3466 -0.0006 5 1 1.8885 2.3966 -1.2124 6 1 1.8887 2.3964 1.2126 7 6 2.0086 -1.2038 -0.0005 8 1 3.0839 -1.2063 -0.1011 9 7 1.3301 -2.3859 0.1265 10 6 1.5495 -3.5247 -0.6254 11 6 2.5498 -3.6612 -1.6924 12 8 2.7348 -4.7427 -2.2181 13 7 3.2664 -2.5896 -2.0854 14 6 4.1895 -2.7008 -3.2176 15 6 5.6649 -2.8182 -2.8002 16 6 5.9898 -1.8852 -3.9808 17 6 7.0658 -0.8448 -3.6634 18 6 8.4271 -1.4300 -3.9384 19 7 9.5337 -0.6898 -3.7287 20 8 8.5268 -2.5674 -4.3476 21 6 4.5551 -1.3473 -3.8495 22 6 0.6869 -4.4979 -0.2231 23 6 -0.1042 -3.9671 0.8259 24 6 -1.1348 -4.4941 1.6136 25 6 -1.7254 -3.7167 2.5688 26 6 -1.3128 -2.4058 2.7676 27 6 -0.2996 -1.8650 2.0052 28 6 0.3162 -2.6370 1.0257 29 1 -0.4850 0.8368 -0.0732 30 1 3.1709 -1.7446 -1.6186 31 1 3.8800 -3.4523 -3.9438 32 1 5.8791 -2.3799 -1.8254 33 1 6.0717 -3.8233 -2.9119 34 1 6.1744 -2.4130 -4.9165 35 1 6.9158 0.0355 -4.2884 36 1 6.9980 -0.5606 -2.6133 37 1 9.4539 0.2197 -3.4012 38 1 10.4098 -1.0664 -3.9062 39 1 4.0672 -1.1666 -4.8073 40 1 4.4641 -0.5059 -3.1627 41 1 0.6188 -5.4961 -0.6295 42 1 -1.4623 -5.5127 1.4662 43 1 -2.5199 -4.1254 3.1756 44 1 -1.7904 -1.8041 3.5268 45 1 0.0146 -0.8446 2.1675 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001419377189.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:27 Heat of formation + Delta-G solvation = -2.956434 kcal Electronic energy + Delta-G solvation = -29298.871904 eV Core-core repulsion = 25281.831359 eV Total energy + Delta-G solvation = -4017.040545 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.54629 -40.04459 -38.92632 -37.53047 -35.90343 -33.88400 -33.79403 -33.01279 -30.73315 -29.96221 -28.90584 -27.93056 -25.58548 -25.08500 -24.13539 -22.24600 -21.01231 -20.59528 -19.92366 -19.75123 -19.02032 -18.11934 -17.60262 -16.78982 -16.49278 -15.69500 -15.65423 -15.50429 -14.99551 -14.88447 -14.51329 -14.29706 -14.05488 -13.69426 -13.33811 -13.06144 -12.91254 -12.75693 -12.63132 -12.39728 -12.20459 -11.94947 -11.72588 -11.61701 -11.53252 -11.23420 -10.96701 -10.77683 -10.68927 -10.65788 -10.25057 -10.17201 -10.03822 -9.92619 -9.77860 -9.35565 -9.28260 -8.64098 -8.41819 -7.19802 -6.86580 -6.60463 -4.73798 1.85711 2.47923 2.72513 2.85805 2.89182 2.91242 3.15916 3.31173 3.61882 3.88553 4.22632 4.47077 4.53785 4.58719 4.63208 4.83115 4.90379 5.07798 5.08976 5.32961 5.38837 5.42757 5.70132 5.82755 5.85803 5.86312 5.96943 6.01133 6.17642 6.21051 6.23913 6.44302 6.51106 6.54405 6.58473 6.70147 6.79324 6.92203 7.08137 7.10417 7.12724 7.14929 7.46173 7.58281 7.64961 7.91188 7.94918 8.06732 8.27305 8.28537 8.66248 9.00754 9.24819 10.08761 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.013784 B = 0.003269 C = 0.002779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2030.886760 B = 8563.696382 C =10071.358451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.817 5.817 2 C 0.059 3.941 3 Si 0.925 3.075 4 H -0.261 1.261 5 H -0.271 1.271 6 H -0.270 1.270 7 C -0.374 4.374 8 H 0.106 0.894 9 N -0.262 5.262 10 C -0.018 4.018 11 C 0.596 3.404 12 O -0.557 6.557 13 N -0.719 5.719 14 C 0.125 3.875 15 C -0.143 4.143 16 C -0.094 4.094 17 C -0.132 4.132 18 C 0.516 3.484 19 N -0.862 5.862 20 O -0.539 6.539 21 C -0.142 4.142 22 C -0.164 4.164 23 C -0.135 4.135 24 C -0.086 4.086 25 C -0.161 4.161 26 C -0.148 4.148 27 C -0.053 4.053 28 C 0.108 3.892 29 H 0.283 0.717 30 H 0.415 0.585 31 H 0.108 0.892 32 H 0.081 0.919 33 H 0.073 0.927 34 H 0.102 0.898 35 H 0.096 0.904 36 H 0.097 0.903 37 H 0.400 0.600 38 H 0.398 0.602 39 H 0.075 0.925 40 H 0.088 0.912 41 H 0.132 0.868 42 H 0.104 0.896 43 H 0.102 0.898 44 H 0.104 0.896 45 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.292 6.020 -3.273 12.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.445 5.445 2 C -0.155 4.155 3 Si 0.749 3.251 4 H -0.185 1.185 5 H -0.196 1.196 6 H -0.195 1.195 7 C -0.501 4.501 8 H 0.124 0.876 9 N 0.073 4.927 10 C -0.133 4.133 11 C 0.385 3.615 12 O -0.436 6.436 13 N -0.377 5.377 14 C 0.019 3.981 15 C -0.182 4.182 16 C -0.113 4.113 17 C -0.172 4.172 18 C 0.301 3.699 19 N -0.426 5.426 20 O -0.415 6.415 21 C -0.180 4.180 22 C -0.192 4.192 23 C -0.139 4.139 24 C -0.105 4.105 25 C -0.180 4.180 26 C -0.168 4.168 27 C -0.073 4.073 28 C -0.007 4.007 29 H 0.094 0.906 30 H 0.261 0.739 31 H 0.126 0.874 32 H 0.100 0.900 33 H 0.092 0.908 34 H 0.121 0.879 35 H 0.114 0.886 36 H 0.115 0.885 37 H 0.229 0.771 38 H 0.229 0.771 39 H 0.094 0.906 40 H 0.106 0.894 41 H 0.150 0.850 42 H 0.122 0.878 43 H 0.120 0.880 44 H 0.123 0.877 45 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 10.305 5.016 -3.948 12.122 hybrid contribution 0.544 1.740 0.266 1.842 sum 10.849 6.756 -3.682 13.301 Atomic orbital electron populations 1.69931 1.06271 1.29422 1.38860 1.25696 0.95660 1.00385 0.93807 0.85891 0.79886 0.80376 0.78983 1.18470 1.19630 1.19522 1.19528 0.92116 0.81793 1.56693 0.87644 1.39913 1.24308 1.07804 1.20639 1.20142 1.03366 0.90576 0.99202 1.17309 0.79216 0.83658 0.81277 1.90714 1.68459 1.26789 1.57678 1.46694 1.42330 1.15195 1.33512 1.22301 0.88488 0.97720 0.89586 1.23533 0.96471 1.00509 0.97718 1.22185 0.92351 0.96224 1.00526 1.21697 0.91421 1.00113 1.04013 1.20826 0.86947 0.85844 0.76251 1.43957 1.09131 1.18414 1.71087 1.90754 1.87431 1.18348 1.44935 1.23413 0.95346 0.97640 1.01638 1.20400 0.99058 0.98799 1.00939 1.18042 1.00749 0.94401 1.00754 1.20058 0.96038 0.98428 0.95993 1.20269 1.01998 0.94994 1.00734 1.20577 0.99205 0.95635 1.01411 1.20080 0.95408 0.98205 0.93569 1.18238 0.95083 0.93388 0.94025 0.90593 0.73907 0.87447 0.90045 0.90848 0.87948 0.88588 0.88499 0.77147 0.77128 0.90625 0.89383 0.85026 0.87779 0.87959 0.87747 0.86690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -19.61 10.62 55.50 0.59 -19.02 16 2 C 0.06 1.31 4.84 -17.47 -0.08 1.22 16 3 Si 0.92 16.52 29.56 -169.99 -5.02 11.50 16 4 H -0.26 -4.37 7.11 56.52 0.40 -3.97 16 5 H -0.27 -4.81 7.11 56.52 0.40 -4.41 16 6 H -0.27 -4.91 7.11 56.52 0.40 -4.51 16 7 C -0.37 -8.62 7.77 -15.01 -0.12 -8.73 16 8 H 0.11 2.25 6.31 -52.49 -0.33 1.92 16 9 N -0.26 -6.47 2.81 -56.08 -0.16 -6.63 16 10 C -0.02 -0.44 6.77 -82.25 -0.56 -1.00 16 11 C 0.60 13.53 7.77 -12.76 -0.10 13.43 16 12 O -0.56 -13.52 16.56 5.22 0.09 -13.43 16 13 N -0.72 -13.76 5.31 -54.26 -0.29 -14.05 16 14 C 0.12 1.97 4.13 -67.12 -0.28 1.69 16 15 C -0.14 -2.03 7.44 -25.83 -0.19 -2.23 16 16 C -0.09 -1.08 3.15 -89.72 -0.28 -1.36 16 17 C -0.13 -1.17 5.54 -27.88 -0.15 -1.32 16 18 C 0.52 5.33 8.10 -10.98 -0.09 5.24 16 19 N -0.86 -5.43 8.87 31.22 0.28 -5.16 16 20 O -0.54 -8.05 16.59 5.56 0.09 -7.96 16 21 C -0.14 -1.72 7.38 -25.92 -0.19 -1.92 16 22 C -0.16 -3.89 10.55 -39.02 -0.41 -4.30 16 23 C -0.13 -3.19 6.16 -106.89 -0.66 -3.85 16 24 C -0.09 -1.78 10.06 -39.51 -0.40 -2.18 16 25 C -0.16 -3.11 9.97 -39.95 -0.40 -3.51 16 26 C -0.15 -2.99 10.02 -39.49 -0.40 -3.39 16 27 C -0.05 -1.22 8.54 -39.41 -0.34 -1.56 16 28 C 0.11 2.67 6.03 -83.84 -0.51 2.16 16 29 H 0.28 6.32 8.31 -40.82 -0.34 5.98 16 30 H 0.42 7.92 4.48 -40.82 -0.18 7.74 16 31 H 0.11 1.81 7.66 -51.93 -0.40 1.41 16 32 H 0.08 1.13 7.90 -51.93 -0.41 0.72 16 33 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 34 H 0.10 1.26 7.67 -51.93 -0.40 0.86 16 35 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.10 0.76 7.85 -51.93 -0.41 0.35 16 37 H 0.40 1.31 8.83 -40.82 -0.36 0.95 16 38 H 0.40 2.23 8.93 -40.82 -0.36 1.87 16 39 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.09 1.02 8.06 -51.93 -0.42 0.61 16 41 H 0.13 2.89 8.06 -52.49 -0.42 2.47 16 42 H 0.10 1.86 8.06 -52.49 -0.42 1.44 16 43 H 0.10 1.64 8.06 -52.49 -0.42 1.22 16 44 H 0.10 1.81 8.06 -52.49 -0.42 1.39 16 45 H 0.12 2.70 6.66 -52.49 -0.35 2.35 16 LS Contribution 375.19 15.07 5.65 5.65 Total: -1.00 -31.33 375.19 -9.63 -40.97 By element: Atomic # 1 Polarization: 25.44 SS G_CDS: -5.72 Total: 19.72 kcal Atomic # 6 Polarization: -6.44 SS G_CDS: -5.15 Total: -11.58 kcal Atomic # 7 Polarization: -45.28 SS G_CDS: 0.42 Total: -44.86 kcal Atomic # 8 Polarization: -21.57 SS G_CDS: 0.18 Total: -21.39 kcal Atomic # 14 Polarization: 16.52 SS G_CDS: -5.02 Total: 11.50 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -31.33 -9.63 -40.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001419377189.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.010 kcal (2) G-P(sol) polarization free energy of solvation -31.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds