Wall clock time and date at job start Sat Apr 11 2020 06:17:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31347 * 1 3 3 Si 1.86802 * 119.99598 * 2 1 4 4 H 1.48504 * 109.47284 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47550 * 300.00742 * 3 2 1 6 6 H 1.48505 * 109.47094 * 60.00780 * 3 2 1 7 7 C 1.39006 * 120.00551 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00117 * 173.82662 * 7 2 1 9 9 N 1.36896 * 119.99561 * 353.82531 * 7 2 1 10 10 C 1.38213 * 125.61842 * 135.47812 * 9 7 2 11 11 C 1.46890 * 125.43752 * 359.94566 * 10 9 7 12 12 O 1.21662 * 120.00350 * 173.97363 * 11 10 9 13 13 N 1.34778 * 120.00072 * 354.24470 * 11 10 9 14 14 C 1.46500 * 120.00149 * 184.69167 * 13 11 10 15 15 C 1.53782 * 113.61281 * 257.62966 * 14 13 11 16 16 C 1.53953 * 87.02047 * 220.04883 * 15 14 13 17 17 C 1.53000 * 113.66608 * 139.93322 * 16 15 14 18 18 C 1.50705 * 109.47023 * 87.44050 * 17 16 15 19 19 N 1.34775 * 119.99752 * 180.02562 * 18 17 16 20 20 O 1.21280 * 119.99988 * 359.97438 * 18 17 16 21 21 C 1.53777 * 113.61330 * 160.02756 * 14 13 11 22 22 C 1.36123 * 109.12639 * 180.20276 * 10 9 7 23 23 C 1.41700 * 107.74599 * 359.62257 * 22 10 9 24 24 C 1.40020 * 133.34701 * 180.13080 * 23 22 10 25 25 C 1.36582 * 119.83016 * 180.28826 * 24 23 22 26 26 C 1.38862 * 120.59985 * 359.97438 * 25 24 23 27 27 C 1.37845 * 120.63126 * 359.97438 * 26 25 24 28 28 C 1.37832 * 125.62117 * 315.43389 * 9 7 2 29 29 H 0.96996 * 120.00070 * 4.99618 * 1 2 3 30 30 H 0.97007 * 119.99646 * 4.69054 * 13 11 10 31 31 H 1.08994 * 112.85184 * 28.82963 * 14 13 11 32 32 H 1.09001 * 113.61377 * 334.57405 * 15 14 13 33 33 H 1.09005 * 113.61416 * 105.46819 * 15 14 13 34 34 H 1.08999 * 113.61198 * 270.79692 * 16 15 14 35 35 H 1.08999 * 109.47520 * 207.43737 * 17 16 15 36 36 H 1.09000 * 109.47411 * 327.44368 * 17 16 15 37 37 H 0.97000 * 120.00258 * 359.97438 * 19 18 17 38 38 H 0.97004 * 119.99422 * 180.02562 * 19 18 17 39 39 H 1.09002 * 113.61450 * 254.52669 * 21 14 13 40 40 H 1.08994 * 113.62018 * 25.34575 * 21 14 13 41 41 H 1.07999 * 126.12387 * 179.71459 * 22 10 9 42 42 H 1.08001 * 120.09081 * 0.26477 * 24 23 22 43 43 H 1.08002 * 119.70450 * 180.02562 * 25 24 23 44 44 H 1.07999 * 119.68113 * 179.97438 * 26 25 24 45 45 H 1.07997 * 120.09595 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3135 0.0000 0.0000 3 14 2.2474 1.6178 0.0000 4 1 3.7074 1.3466 -0.0006 5 1 1.8885 2.3966 -1.2124 6 1 1.8887 2.3964 1.2126 7 6 2.0086 -1.2038 -0.0005 8 1 3.0839 -1.2063 -0.1011 9 7 1.3301 -2.3859 0.1265 10 6 1.5495 -3.5247 -0.6254 11 6 2.5498 -3.6612 -1.6924 12 8 2.7348 -4.7427 -2.2181 13 7 3.2664 -2.5896 -2.0854 14 6 4.1895 -2.7008 -3.2176 15 6 5.6649 -2.8182 -2.8002 16 6 5.9898 -1.8852 -3.9808 17 6 7.0658 -0.8448 -3.6634 18 6 8.4271 -1.4300 -3.9384 19 7 9.5337 -0.6898 -3.7287 20 8 8.5268 -2.5674 -4.3476 21 6 4.5551 -1.3473 -3.8495 22 6 0.6869 -4.4979 -0.2231 23 6 -0.1042 -3.9671 0.8259 24 6 -1.1348 -4.4941 1.6136 25 6 -1.7254 -3.7167 2.5688 26 6 -1.3128 -2.4058 2.7676 27 6 -0.2996 -1.8650 2.0052 28 6 0.3162 -2.6370 1.0257 29 1 -0.4850 0.8368 -0.0732 30 1 3.1709 -1.7446 -1.6186 31 1 3.8800 -3.4523 -3.9438 32 1 5.8791 -2.3799 -1.8254 33 1 6.0717 -3.8233 -2.9119 34 1 6.1744 -2.4130 -4.9165 35 1 6.9158 0.0355 -4.2884 36 1 6.9980 -0.5606 -2.6133 37 1 9.4539 0.2197 -3.4012 38 1 10.4098 -1.0664 -3.9062 39 1 4.0672 -1.1666 -4.8073 40 1 4.4641 -0.5059 -3.1627 41 1 0.6188 -5.4961 -0.6295 42 1 -1.4623 -5.5127 1.4662 43 1 -2.5199 -4.1254 3.1756 44 1 -1.7904 -1.8041 3.5268 45 1 0.0146 -0.8446 2.1675 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001419377189.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:26 Heat of formation + Delta-G solvation = -23.685766 kcal Electronic energy + Delta-G solvation = -29299.770795 eV Core-core repulsion = 25281.831359 eV Total energy + Delta-G solvation = -4017.939436 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.23405 -41.12081 -40.18420 -38.91902 -37.58274 -35.48139 -34.64968 -34.49210 -32.45718 -31.06030 -30.47875 -29.56194 -26.84632 -26.64850 -25.55764 -23.56208 -22.70545 -21.82041 -21.34983 -21.12257 -20.40320 -19.73662 -18.34050 -18.13324 -17.54172 -17.36341 -17.01905 -16.52362 -16.44846 -16.29845 -16.02381 -15.73498 -15.55052 -14.91666 -14.73377 -14.63069 -14.57931 -14.25513 -13.92309 -13.59973 -13.50143 -13.39879 -13.26543 -13.06730 -12.76453 -12.66362 -12.32509 -12.09678 -12.06569 -11.85992 -11.71957 -11.44598 -11.31735 -11.03865 -10.98203 -10.90815 -10.59546 -10.38387 -9.95366 -8.91154 -8.59374 -8.32361 -6.50817 0.12641 1.12062 1.38164 1.41811 1.45868 1.56889 1.72383 2.10999 2.31448 2.50855 2.69913 2.82163 2.92196 3.36842 3.53943 3.59572 3.85032 3.91374 4.04288 4.14918 4.24187 4.39521 4.43795 4.55684 4.62355 4.72247 4.74872 4.77912 4.84396 4.86965 4.90229 5.02260 5.07266 5.08426 5.16305 5.22878 5.36829 5.40925 5.46347 5.66457 5.76938 5.91585 5.95557 5.97590 6.21016 6.25485 6.53362 6.57825 6.62368 6.93012 7.30273 7.42748 7.50285 8.42016 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.013784 B = 0.003269 C = 0.002779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2030.886760 B = 8563.696382 C =10071.358451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.853 5.853 2 C 0.022 3.978 3 Si 0.994 3.006 4 H -0.237 1.237 5 H -0.265 1.265 6 H -0.275 1.275 7 C -0.393 4.393 8 H 0.117 0.883 9 N -0.271 5.271 10 C -0.045 4.045 11 C 0.589 3.411 12 O -0.585 6.585 13 N -0.706 5.706 14 C 0.103 3.897 15 C -0.143 4.143 16 C -0.079 4.079 17 C -0.128 4.128 18 C 0.511 3.489 19 N -0.841 5.841 20 O -0.595 6.595 21 C -0.125 4.125 22 C -0.182 4.182 23 C -0.157 4.157 24 C -0.094 4.094 25 C -0.153 4.153 26 C -0.138 4.138 27 C -0.079 4.079 28 C 0.076 3.924 29 H 0.285 0.715 30 H 0.417 0.583 31 H 0.089 0.911 32 H 0.087 0.913 33 H 0.050 0.950 34 H 0.092 0.908 35 H 0.131 0.869 36 H 0.114 0.886 37 H 0.418 0.582 38 H 0.404 0.596 39 H 0.089 0.911 40 H 0.103 0.897 41 H 0.137 0.863 42 H 0.131 0.869 43 H 0.145 0.855 44 H 0.137 0.863 45 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.855 8.634 -2.603 14.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.481 5.481 2 C -0.189 4.189 3 Si 0.813 3.187 4 H -0.160 1.160 5 H -0.190 1.190 6 H -0.200 1.200 7 C -0.520 4.520 8 H 0.134 0.866 9 N 0.064 4.936 10 C -0.160 4.160 11 C 0.378 3.622 12 O -0.467 6.467 13 N -0.362 5.362 14 C -0.002 4.002 15 C -0.182 4.182 16 C -0.098 4.098 17 C -0.167 4.167 18 C 0.297 3.703 19 N -0.405 5.405 20 O -0.476 6.476 21 C -0.163 4.163 22 C -0.210 4.210 23 C -0.162 4.162 24 C -0.113 4.113 25 C -0.172 4.172 26 C -0.159 4.159 27 C -0.098 4.098 28 C -0.039 4.039 29 H 0.096 0.904 30 H 0.263 0.737 31 H 0.107 0.893 32 H 0.105 0.895 33 H 0.069 0.931 34 H 0.110 0.890 35 H 0.148 0.852 36 H 0.133 0.867 37 H 0.250 0.750 38 H 0.235 0.765 39 H 0.108 0.892 40 H 0.122 0.878 41 H 0.155 0.845 42 H 0.149 0.851 43 H 0.163 0.837 44 H 0.155 0.845 45 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 10.913 7.685 -3.272 13.742 hybrid contribution 0.306 0.902 0.136 0.962 sum 11.219 8.587 -3.137 14.472 Atomic orbital electron populations 1.70051 1.08102 1.30428 1.39560 1.26656 0.96278 1.03490 0.92466 0.84875 0.79800 0.75303 0.78706 1.15982 1.18980 1.20035 1.19988 0.92813 0.81899 1.57268 0.86566 1.40149 1.24527 1.08218 1.20669 1.20501 1.04309 0.91099 1.00078 1.17324 0.79528 0.84163 0.81137 1.90675 1.69524 1.27837 1.58700 1.46664 1.41720 1.14050 1.33814 1.22668 0.88521 1.00299 0.88675 1.23519 0.95018 1.00304 0.99351 1.22015 0.93194 0.96012 0.98598 1.21710 0.89290 0.99919 1.05795 1.21130 0.88293 0.85267 0.75584 1.43788 1.08467 1.18921 1.69349 1.90745 1.88216 1.20799 1.47848 1.23366 0.95206 0.95563 1.02115 1.20609 0.99641 0.99180 1.01593 1.18423 1.01914 0.94415 1.01420 1.20458 0.95168 0.99985 0.95671 1.20733 1.02088 0.94263 1.00072 1.21022 0.97629 0.96432 1.00791 1.20160 0.97130 0.97882 0.94677 1.18704 0.95903 0.94373 0.94904 0.90423 0.73738 0.89259 0.89497 0.93121 0.88980 0.85155 0.86750 0.75022 0.76548 0.89209 0.87842 0.84494 0.85104 0.83690 0.84537 0.87912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -41.44 10.62 21.67 0.23 -41.21 16 2 C 0.02 0.96 4.84 84.95 0.41 1.37 16 3 Si 0.99 32.46 29.56 68.60 2.03 34.49 16 4 H -0.24 -6.79 7.11 99.48 0.71 -6.08 16 5 H -0.27 -8.37 7.11 99.48 0.71 -7.67 16 6 H -0.28 -9.16 7.11 99.48 0.71 -8.46 16 7 C -0.39 -18.33 7.77 84.09 0.65 -17.67 16 8 H 0.12 4.96 6.31 -2.91 -0.02 4.94 16 9 N -0.27 -13.82 2.81 -331.35 -0.93 -14.75 16 10 C -0.05 -2.29 6.77 39.91 0.27 -2.02 16 11 C 0.59 28.05 7.77 86.51 0.67 28.72 16 12 O -0.59 -30.00 16.56 -4.23 -0.07 -30.07 16 13 N -0.71 -27.64 5.31 -443.82 -2.36 -30.00 16 14 C 0.10 3.30 4.13 45.52 0.19 3.49 16 15 C -0.14 -4.09 7.44 31.18 0.23 -3.86 16 16 C -0.08 -1.71 3.15 -10.21 -0.03 -1.74 16 17 C -0.13 -1.84 5.54 29.85 0.17 -1.67 16 18 C 0.51 9.59 8.10 87.66 0.71 10.30 16 19 N -0.84 -8.37 8.87 -173.53 -1.54 -9.91 16 20 O -0.60 -17.71 16.59 -3.03 -0.05 -17.76 16 21 C -0.12 -2.78 7.38 31.12 0.23 -2.55 16 22 C -0.18 -9.03 10.55 22.63 0.24 -8.79 16 23 C -0.16 -7.60 6.16 -21.34 -0.13 -7.74 16 24 C -0.09 -3.78 10.06 22.31 0.22 -3.56 16 25 C -0.15 -5.51 9.97 22.03 0.22 -5.29 16 26 C -0.14 -5.37 10.02 22.33 0.22 -5.15 16 27 C -0.08 -3.66 8.54 22.38 0.19 -3.47 16 28 C 0.08 3.86 6.03 39.06 0.24 4.09 16 29 H 0.29 12.84 8.31 -92.71 -0.77 12.07 16 30 H 0.42 15.93 4.48 -92.70 -0.42 15.52 16 31 H 0.09 3.17 7.66 -2.39 -0.02 3.15 16 32 H 0.09 2.36 7.90 -2.39 -0.02 2.34 16 33 H 0.05 1.65 8.14 -2.38 -0.02 1.63 16 34 H 0.09 2.23 7.67 -2.39 -0.02 2.21 16 35 H 0.13 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.11 1.32 7.85 -2.39 -0.02 1.30 16 37 H 0.42 1.22 8.83 -92.71 -0.82 0.40 16 38 H 0.40 3.68 8.93 -92.71 -0.83 2.85 16 39 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 40 H 0.10 2.04 8.06 -2.39 -0.02 2.02 16 41 H 0.14 6.36 8.06 -2.91 -0.02 6.34 16 42 H 0.13 4.44 8.06 -2.91 -0.02 4.42 16 43 H 0.15 3.98 8.06 -2.91 -0.02 3.96 16 44 H 0.14 4.33 8.06 -2.91 -0.02 4.30 16 45 H 0.10 4.93 6.66 -2.91 -0.02 4.91 16 Total: -1.00 -72.78 375.19 1.02 -71.77 By element: Atomic # 1 Polarization: 53.96 SS G_CDS: -0.99 Total: 52.96 kcal Atomic # 6 Polarization: -20.22 SS G_CDS: 4.70 Total: -15.52 kcal Atomic # 7 Polarization: -91.28 SS G_CDS: -4.60 Total: -95.88 kcal Atomic # 8 Polarization: -47.71 SS G_CDS: -0.12 Total: -47.83 kcal Atomic # 14 Polarization: 32.46 SS G_CDS: 2.03 Total: 34.49 kcal Total: -72.78 1.02 -71.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001419377189.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.084 kcal (2) G-P(sol) polarization free energy of solvation -72.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds