Wall clock time and date at job start Sat Apr 11 2020 06:17:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 120.00560 * 2 1 4 4 H 1.48503 * 109.47305 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46805 * 300.00139 * 3 2 1 6 6 H 1.48495 * 109.46761 * 59.99991 * 3 2 1 7 7 C 1.37877 * 119.99894 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00872 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99883 * 359.97438 * 7 2 1 10 10 N 1.46502 * 109.47334 * 180.02562 * 9 7 2 11 11 N 1.39910 * 125.80389 * 90.02899 * 10 9 7 12 12 C 1.30466 * 109.21641 * 179.97438 * 11 10 9 13 13 C 1.41085 * 108.29951 * 359.97438 * 12 11 10 14 14 C 1.47182 * 126.47909 * 179.97438 * 13 12 11 15 15 O 1.21632 * 119.99925 * 180.02562 * 14 13 12 16 16 N 1.34776 * 119.99681 * 0.02562 * 14 13 12 17 17 C 1.46496 * 119.99968 * 179.97438 * 16 14 13 18 18 C 1.50698 * 109.47469 * 180.02562 * 17 16 14 19 19 C 1.31002 * 120.00223 * 126.60653 * 18 17 16 20 20 C 1.50698 * 119.99599 * 6.93472 * 19 18 17 21 21 O 1.42904 * 109.47256 * 135.96560 * 20 19 18 22 22 C 1.35167 * 125.80580 * 270.29515 * 10 9 7 23 23 C 1.47736 * 126.47806 * 0.03407 * 22 10 9 24 24 C 1.39617 * 120.14724 * 314.90200 * 23 22 10 25 25 C 1.37946 * 119.84850 * 179.78937 * 24 23 22 26 26 C 1.38365 * 120.15038 * 0.46637 * 25 24 23 27 27 C 1.38363 * 120.29915 * 359.78868 * 26 25 24 28 28 C 1.37955 * 120.14880 * 359.97438 * 27 26 25 29 29 H 0.97002 * 119.99342 * 359.97438 * 1 2 3 30 30 H 1.09003 * 109.46682 * 60.00045 * 9 7 2 31 31 H 1.09004 * 109.47431 * 300.00565 * 9 7 2 32 32 H 1.07997 * 125.84664 * 180.02562 * 12 11 10 33 33 H 0.97003 * 120.00252 * 0.02562 * 16 14 13 34 34 H 1.09001 * 109.47130 * 60.00749 * 17 16 14 35 35 H 1.08996 * 109.47597 * 300.00466 * 17 16 14 36 36 H 1.08000 * 120.00236 * 306.33732 * 18 17 16 37 37 H 1.07995 * 120.00191 * 186.92823 * 19 18 17 38 38 H 1.09003 * 109.46990 * 255.95915 * 20 19 18 39 39 H 1.08998 * 109.47326 * 15.96495 * 20 19 18 40 40 H 0.96701 * 114.00323 * 180.02562 * 21 20 19 41 41 H 1.08001 * 120.07248 * 0.02562 * 24 23 22 42 42 H 1.08004 * 119.92828 * 180.23237 * 25 24 23 43 43 H 1.07999 * 119.85049 * 179.76312 * 26 25 24 44 44 H 1.07997 * 119.92406 * 180.02562 * 27 26 25 45 45 H 1.07997 * 120.07331 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7093 1.3462 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8906 2.3963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2028 -3.6128 -0.0005 11 7 2.7342 -4.2353 1.1342 12 6 3.5464 -5.1860 0.7617 13 6 3.5736 -5.2182 -0.6485 14 6 4.3593 -6.1372 -1.4878 15 8 4.2938 -6.0602 -2.6999 16 7 5.1513 -7.0640 -0.9132 17 6 5.9329 -7.9791 -1.7485 18 6 6.7270 -8.9091 -0.8678 19 6 6.6364 -10.2053 -1.0341 20 6 5.8638 -10.7630 -2.2016 21 8 6.6070 -11.8266 -2.8003 22 6 2.7210 -4.2102 -1.0967 23 6 2.4349 -3.8633 -2.5040 24 6 1.1205 -3.6376 -2.9173 25 6 0.8609 -3.3098 -4.2318 26 6 1.8985 -3.2139 -5.1422 27 6 3.2028 -3.4416 -4.7405 28 6 3.4770 -3.7654 -3.4278 29 1 -0.4849 0.8401 0.0004 30 1 0.6239 -2.5566 -0.8903 31 1 0.6245 -2.5571 0.8896 32 1 4.1020 -5.8372 1.4201 33 1 5.2033 -7.1256 0.0535 34 1 6.6131 -7.4052 -2.3779 35 1 5.2599 -8.5614 -2.3776 36 1 7.3741 -8.5068 -0.1024 37 1 7.1155 -10.8743 -0.3346 38 1 4.9029 -11.1423 -1.8535 39 1 5.6988 -9.9759 -2.9374 40 1 6.1689 -12.2334 -3.5604 41 1 0.3094 -3.7157 -2.2085 42 1 -0.1550 -3.1312 -4.5521 43 1 1.6893 -2.9607 -6.1710 44 1 4.0081 -3.3647 -5.4560 45 1 4.4956 -3.9424 -3.1156 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001469971792.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:29 Heat of formation + Delta-G solvation = 35.649867 kcal Electronic energy + Delta-G solvation = -28785.180520 eV Core-core repulsion = 24769.814070 eV Total energy + Delta-G solvation = -4015.366450 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.89071 -38.99932 -38.32516 -37.66014 -35.61070 -33.93746 -33.15003 -32.12813 -31.39933 -30.41161 -28.73596 -27.70749 -26.83372 -25.31246 -23.59658 -22.71746 -22.13187 -21.66322 -19.87862 -19.58765 -18.82816 -17.91727 -17.39298 -16.75711 -16.38075 -16.25337 -15.56044 -15.31631 -14.95508 -14.79995 -14.68908 -14.42290 -14.01455 -13.94088 -13.64488 -13.41259 -13.16722 -13.07288 -12.87554 -12.68651 -12.36786 -12.33921 -12.10265 -11.71601 -11.22358 -11.12544 -11.00345 -10.94087 -10.61599 -10.54554 -10.37031 -10.32842 -9.92916 -9.68624 -9.38333 -9.13797 -8.89009 -8.70433 -8.38642 -8.18943 -7.79837 -6.33210 -4.39833 1.36045 1.60276 1.92399 2.33612 2.72797 3.15224 3.17580 3.25394 3.32306 3.61018 3.85348 4.00361 4.24974 4.33040 4.49694 4.71812 4.86488 4.87722 5.01047 5.06341 5.09648 5.27752 5.34163 5.35303 5.44458 5.50477 5.55033 5.64854 5.71483 5.88783 5.96606 6.14312 6.18727 6.27711 6.33640 6.48303 6.54322 6.66769 6.82367 6.89998 6.92511 6.99921 7.08760 7.23722 7.38695 7.53369 7.69428 7.72538 7.76987 8.28398 8.56680 8.64226 9.26429 10.75261 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.013961 B = 0.002876 C = 0.002568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2005.034801 B = 9731.962759 C =10900.703514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.069 3.931 3 Si 0.906 3.094 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.280 1.280 7 C -0.536 4.536 8 H 0.065 0.935 9 C 0.245 3.755 10 N -0.304 5.304 11 N -0.289 5.289 12 C 0.058 3.942 13 C -0.317 4.317 14 C 0.599 3.401 15 O -0.545 6.545 16 N -0.731 5.731 17 C 0.142 3.858 18 C -0.161 4.161 19 C -0.137 4.137 20 C 0.091 3.909 21 O -0.572 6.572 22 C 0.198 3.802 23 C -0.031 4.031 24 C -0.086 4.086 25 C -0.129 4.129 26 C -0.111 4.111 27 C -0.133 4.133 28 C -0.040 4.040 29 H 0.268 0.732 30 H 0.063 0.937 31 H 0.058 0.942 32 H 0.178 0.822 33 H 0.399 0.601 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.124 0.876 37 H 0.120 0.880 38 H 0.057 0.943 39 H 0.064 0.936 40 H 0.382 0.618 41 H 0.123 0.877 42 H 0.121 0.879 43 H 0.117 0.883 44 H 0.119 0.881 45 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.162 -16.505 -5.878 19.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.135 4.135 3 Si 0.733 3.267 4 H -0.195 1.195 5 H -0.205 1.205 6 H -0.206 1.206 7 C -0.574 4.574 8 H 0.083 0.917 9 C 0.128 3.872 10 N -0.080 5.080 11 N -0.109 5.109 12 C -0.128 4.128 13 C -0.332 4.332 14 C 0.389 3.611 15 O -0.424 6.424 16 N -0.383 5.383 17 C 0.019 3.981 18 C -0.180 4.180 19 C -0.156 4.156 20 C 0.014 3.986 21 O -0.378 6.378 22 C 0.062 3.938 23 C -0.032 4.032 24 C -0.105 4.105 25 C -0.147 4.147 26 C -0.129 4.129 27 C -0.151 4.151 28 C -0.059 4.059 29 H 0.078 0.922 30 H 0.081 0.919 31 H 0.076 0.924 32 H 0.195 0.805 33 H 0.233 0.767 34 H 0.092 0.908 35 H 0.093 0.907 36 H 0.142 0.858 37 H 0.138 0.862 38 H 0.075 0.925 39 H 0.082 0.918 40 H 0.229 0.771 41 H 0.141 0.859 42 H 0.139 0.861 43 H 0.135 0.865 44 H 0.137 0.863 45 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 7.717 -15.421 -5.199 18.011 hybrid contribution 0.413 0.362 -0.315 0.633 sum 8.131 -15.059 -5.513 17.980 Atomic orbital electron populations 1.69913 1.06007 1.27714 1.49017 1.24886 0.94990 0.99429 0.94208 0.86294 0.80092 0.82428 0.77895 1.19516 1.20515 1.20565 1.21237 0.93724 0.89304 1.53158 0.91678 1.20075 0.86270 0.80394 1.00459 1.49650 1.32032 1.25024 1.01338 1.77129 1.14331 1.10232 1.09238 1.23674 0.98478 0.97406 0.93259 1.19817 1.13033 1.07092 0.93286 1.17249 0.77822 0.78946 0.87041 1.90766 1.66086 1.71550 1.13982 1.45681 1.46972 1.35621 1.10058 1.20364 0.93956 0.90965 0.92793 1.22928 0.99542 0.94211 1.01292 1.22640 0.99630 0.95672 0.97657 1.21348 0.93672 0.89576 0.93991 1.86467 1.49386 1.51745 1.50177 1.19769 0.93472 0.92137 0.88449 1.17841 0.93906 1.02432 0.89068 1.21238 0.95528 0.97483 0.96223 1.20905 0.99108 1.01478 0.93183 1.21144 0.93003 0.99640 0.99147 1.20929 0.96538 1.01802 0.95838 1.21043 0.98628 0.93960 0.92247 0.92195 0.91918 0.92417 0.80493 0.76713 0.90760 0.90748 0.85802 0.86174 0.92543 0.91817 0.77066 0.85945 0.86121 0.86521 0.86324 0.85735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.54 13.29 55.43 0.74 -23.80 16 2 C 0.07 1.85 5.46 -17.82 -0.10 1.75 16 3 Si 0.91 21.05 29.54 -169.99 -5.02 16.03 16 4 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 5 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 6 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.54 -14.55 9.39 -34.44 -0.32 -14.87 16 8 H 0.07 1.83 7.81 -52.48 -0.41 1.42 16 9 C 0.24 6.10 5.95 -5.19 -0.03 6.06 16 10 N -0.30 -6.87 3.59 -58.19 -0.21 -7.08 16 11 N -0.29 -6.08 12.48 30.82 0.38 -5.69 16 12 C 0.06 0.97 11.48 -17.05 -0.20 0.77 16 13 C -0.32 -5.71 6.13 -104.74 -0.64 -6.35 16 14 C 0.60 9.62 7.69 -12.63 -0.10 9.53 16 15 O -0.55 -9.98 12.96 5.25 0.07 -9.92 16 16 N -0.73 -8.52 5.54 -62.65 -0.35 -8.87 16 17 C 0.14 1.43 5.72 -5.20 -0.03 1.40 16 18 C -0.16 -1.27 9.63 -36.03 -0.35 -1.62 16 19 C -0.14 -1.09 9.89 -36.03 -0.36 -1.45 16 20 C 0.09 0.71 6.92 36.00 0.25 0.96 16 21 O -0.57 -4.69 13.64 -35.23 -0.48 -5.17 16 22 C 0.20 4.12 6.50 -82.07 -0.53 3.59 16 23 C -0.03 -0.61 5.25 -104.99 -0.55 -1.16 16 24 C -0.09 -1.62 8.52 -39.17 -0.33 -1.95 16 25 C -0.13 -2.11 10.03 -39.64 -0.40 -2.50 16 26 C -0.11 -1.68 10.04 -39.49 -0.40 -2.08 16 27 C -0.13 -2.13 10.03 -39.64 -0.40 -2.52 16 28 C -0.04 -0.73 7.54 -39.17 -0.30 -1.03 16 29 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 30 H 0.06 1.55 5.08 -51.93 -0.26 1.29 16 31 H 0.06 1.52 8.14 -51.93 -0.42 1.09 16 32 H 0.18 2.07 7.49 -52.49 -0.39 1.67 16 33 H 0.40 3.70 7.41 -40.82 -0.30 3.40 16 34 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.07 0.78 5.42 -51.93 -0.28 0.49 16 36 H 0.12 0.81 8.06 -52.49 -0.42 0.38 16 37 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 38 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.06 0.49 5.64 -51.93 -0.29 0.20 16 40 H 0.38 1.41 9.12 45.56 0.42 1.82 16 41 H 0.12 2.31 6.53 -52.49 -0.34 1.96 16 42 H 0.12 1.67 8.06 -52.48 -0.42 1.25 16 43 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 44 H 0.12 1.57 8.06 -52.49 -0.42 1.15 16 45 H 0.12 2.31 6.78 -52.49 -0.36 1.95 16 LS Contribution 382.83 15.07 5.77 5.77 Total: -1.00 -32.94 382.83 -8.62 -41.56 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: -4.74 Total: 8.64 kcal Atomic # 6 Polarization: -6.69 SS G_CDS: -4.78 Total: -11.47 kcal Atomic # 7 Polarization: -46.01 SS G_CDS: 0.57 Total: -45.45 kcal Atomic # 8 Polarization: -14.67 SS G_CDS: -0.41 Total: -15.08 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -32.94 -8.62 -41.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001469971792.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.209 kcal (2) G-P(sol) polarization free energy of solvation -32.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.559 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds