Wall clock time and date at job start Sat Apr 11 2020 06:17:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 120.00560 * 2 1 4 4 H 1.48503 * 109.47305 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46805 * 300.00139 * 3 2 1 6 6 H 1.48495 * 109.46761 * 59.99991 * 3 2 1 7 7 C 1.37877 * 119.99894 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00872 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99883 * 359.97438 * 7 2 1 10 10 N 1.46502 * 109.47334 * 180.02562 * 9 7 2 11 11 N 1.39910 * 125.80389 * 90.02899 * 10 9 7 12 12 C 1.30466 * 109.21641 * 179.97438 * 11 10 9 13 13 C 1.41085 * 108.29951 * 359.97438 * 12 11 10 14 14 C 1.47182 * 126.47909 * 179.97438 * 13 12 11 15 15 O 1.21632 * 119.99925 * 180.02562 * 14 13 12 16 16 N 1.34776 * 119.99681 * 0.02562 * 14 13 12 17 17 C 1.46496 * 119.99968 * 179.97438 * 16 14 13 18 18 C 1.50698 * 109.47469 * 180.02562 * 17 16 14 19 19 C 1.31002 * 120.00223 * 126.60653 * 18 17 16 20 20 C 1.50698 * 119.99599 * 6.93472 * 19 18 17 21 21 O 1.42904 * 109.47256 * 135.96560 * 20 19 18 22 22 C 1.35167 * 125.80580 * 270.29515 * 10 9 7 23 23 C 1.47736 * 126.47806 * 0.03407 * 22 10 9 24 24 C 1.39617 * 120.14724 * 314.90200 * 23 22 10 25 25 C 1.37946 * 119.84850 * 179.78937 * 24 23 22 26 26 C 1.38365 * 120.15038 * 0.46637 * 25 24 23 27 27 C 1.38363 * 120.29915 * 359.78868 * 26 25 24 28 28 C 1.37955 * 120.14880 * 359.97438 * 27 26 25 29 29 H 0.97002 * 119.99342 * 359.97438 * 1 2 3 30 30 H 1.09003 * 109.46682 * 60.00045 * 9 7 2 31 31 H 1.09004 * 109.47431 * 300.00565 * 9 7 2 32 32 H 1.07997 * 125.84664 * 180.02562 * 12 11 10 33 33 H 0.97003 * 120.00252 * 0.02562 * 16 14 13 34 34 H 1.09001 * 109.47130 * 60.00749 * 17 16 14 35 35 H 1.08996 * 109.47597 * 300.00466 * 17 16 14 36 36 H 1.08000 * 120.00236 * 306.33732 * 18 17 16 37 37 H 1.07995 * 120.00191 * 186.92823 * 19 18 17 38 38 H 1.09003 * 109.46990 * 255.95915 * 20 19 18 39 39 H 1.08998 * 109.47326 * 15.96495 * 20 19 18 40 40 H 0.96701 * 114.00323 * 180.02562 * 21 20 19 41 41 H 1.08001 * 120.07248 * 0.02562 * 24 23 22 42 42 H 1.08004 * 119.92828 * 180.23237 * 25 24 23 43 43 H 1.07999 * 119.85049 * 179.76312 * 26 25 24 44 44 H 1.07997 * 119.92406 * 180.02562 * 27 26 25 45 45 H 1.07997 * 120.07331 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7093 1.3462 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8906 2.3963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2028 -3.6128 -0.0005 11 7 2.7342 -4.2353 1.1342 12 6 3.5464 -5.1860 0.7617 13 6 3.5736 -5.2182 -0.6485 14 6 4.3593 -6.1372 -1.4878 15 8 4.2938 -6.0602 -2.6999 16 7 5.1513 -7.0640 -0.9132 17 6 5.9329 -7.9791 -1.7485 18 6 6.7270 -8.9091 -0.8678 19 6 6.6364 -10.2053 -1.0341 20 6 5.8638 -10.7630 -2.2016 21 8 6.6070 -11.8266 -2.8003 22 6 2.7210 -4.2102 -1.0967 23 6 2.4349 -3.8633 -2.5040 24 6 1.1205 -3.6376 -2.9173 25 6 0.8609 -3.3098 -4.2318 26 6 1.8985 -3.2139 -5.1422 27 6 3.2028 -3.4416 -4.7405 28 6 3.4770 -3.7654 -3.4278 29 1 -0.4849 0.8401 0.0004 30 1 0.6239 -2.5566 -0.8903 31 1 0.6245 -2.5571 0.8896 32 1 4.1020 -5.8372 1.4201 33 1 5.2033 -7.1256 0.0535 34 1 6.6131 -7.4052 -2.3779 35 1 5.2599 -8.5614 -2.3776 36 1 7.3741 -8.5068 -0.1024 37 1 7.1155 -10.8743 -0.3346 38 1 4.9029 -11.1423 -1.8535 39 1 5.6988 -9.9759 -2.9374 40 1 6.1689 -12.2334 -3.5604 41 1 0.3094 -3.7157 -2.2085 42 1 -0.1550 -3.1312 -4.5521 43 1 1.6893 -2.9607 -6.1710 44 1 4.0081 -3.3647 -5.4560 45 1 4.4956 -3.9424 -3.1156 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001469971792.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:29 Heat of formation + Delta-G solvation = 12.495704 kcal Electronic energy + Delta-G solvation = -28786.184560 eV Core-core repulsion = 24769.814070 eV Total energy + Delta-G solvation = -4016.370490 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.36707 -40.18499 -39.65614 -38.35036 -36.45923 -35.81706 -34.23008 -33.64843 -32.93564 -31.74835 -30.07407 -29.35585 -27.89266 -26.19537 -25.28314 -24.12015 -23.53064 -22.96400 -21.22987 -20.84035 -19.81481 -18.95754 -18.58467 -18.44485 -17.55607 -17.21512 -16.95808 -16.60282 -16.42944 -16.16756 -15.67291 -15.50788 -15.45632 -15.21035 -14.97066 -14.56233 -14.49135 -14.34762 -14.08159 -13.93731 -13.62355 -13.59124 -13.47245 -13.15338 -13.03292 -12.76023 -12.39710 -12.28363 -11.98502 -11.86121 -11.82720 -11.77907 -11.15727 -10.85664 -10.76227 -10.66083 -10.30448 -9.91280 -9.75207 -9.65485 -9.21051 -8.38733 -6.53763 -0.04290 0.57885 0.91948 0.97475 1.29179 1.33630 1.35932 1.47201 1.64489 2.30582 2.51328 2.53660 2.93379 2.97928 3.48355 3.49212 3.70932 3.86242 4.00720 4.08002 4.09696 4.13600 4.25266 4.26556 4.31081 4.48619 4.57423 4.59809 4.61130 4.74302 4.81796 4.83691 4.94189 5.00184 5.02109 5.17769 5.44759 5.45511 5.53533 5.54703 5.60655 5.62723 5.63702 5.73958 5.74623 5.97212 6.11125 6.52575 6.63882 6.79830 6.85834 7.16108 7.37493 8.69551 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.013961 B = 0.002876 C = 0.002568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2005.034801 B = 9731.962759 C =10900.703514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.026 3.974 3 Si 0.967 3.033 4 H -0.274 1.274 5 H -0.268 1.268 6 H -0.270 1.270 7 C -0.551 4.551 8 H 0.047 0.953 9 C 0.262 3.738 10 N -0.332 5.332 11 N -0.330 5.330 12 C 0.080 3.920 13 C -0.317 4.317 14 C 0.600 3.400 15 O -0.570 6.570 16 N -0.710 5.710 17 C 0.142 3.858 18 C -0.157 4.157 19 C -0.139 4.139 20 C 0.087 3.913 21 O -0.589 6.589 22 C 0.179 3.821 23 C -0.058 4.058 24 C -0.110 4.110 25 C -0.132 4.132 26 C -0.103 4.103 27 C -0.132 4.132 28 C -0.054 4.054 29 H 0.274 0.726 30 H 0.057 0.943 31 H 0.031 0.969 32 H 0.232 0.768 33 H 0.413 0.587 34 H 0.068 0.932 35 H 0.072 0.928 36 H 0.142 0.858 37 H 0.129 0.871 38 H 0.064 0.936 39 H 0.061 0.939 40 H 0.399 0.601 41 H 0.107 0.893 42 H 0.145 0.855 43 H 0.158 0.842 44 H 0.150 0.850 45 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.780 -17.206 -6.916 20.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.175 4.175 3 Si 0.791 3.209 4 H -0.199 1.199 5 H -0.193 1.193 6 H -0.196 1.196 7 C -0.590 4.590 8 H 0.065 0.935 9 C 0.144 3.856 10 N -0.108 5.108 11 N -0.150 5.150 12 C -0.106 4.106 13 C -0.332 4.332 14 C 0.388 3.612 15 O -0.450 6.450 16 N -0.363 5.363 17 C 0.020 3.980 18 C -0.175 4.175 19 C -0.158 4.158 20 C 0.010 3.990 21 O -0.398 6.398 22 C 0.044 3.956 23 C -0.060 4.060 24 C -0.129 4.129 25 C -0.150 4.150 26 C -0.121 4.121 27 C -0.150 4.150 28 C -0.073 4.073 29 H 0.083 0.917 30 H 0.075 0.925 31 H 0.049 0.951 32 H 0.248 0.752 33 H 0.249 0.751 34 H 0.086 0.914 35 H 0.090 0.910 36 H 0.160 0.840 37 H 0.147 0.853 38 H 0.082 0.918 39 H 0.079 0.921 40 H 0.249 0.751 41 H 0.125 0.875 42 H 0.163 0.837 43 H 0.176 0.824 44 H 0.167 0.833 45 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 9.347 -16.167 -6.226 19.685 hybrid contribution -0.039 0.413 -0.065 0.420 sum 9.308 -15.753 -6.290 19.349 Atomic orbital electron populations 1.69991 1.07139 1.28819 1.49244 1.25668 0.95832 1.02470 0.93558 0.85363 0.78479 0.78506 0.78526 1.19872 1.19338 1.19555 1.21344 0.92949 0.90870 1.53787 0.93489 1.19550 0.86404 0.80887 0.98750 1.49345 1.33285 1.25693 1.02444 1.77062 1.16269 1.12077 1.09554 1.24493 0.96558 0.96049 0.93482 1.20164 1.12372 1.06558 0.94129 1.17039 0.78252 0.79427 0.86454 1.90749 1.67006 1.72345 1.14903 1.45507 1.45466 1.34275 1.11022 1.20437 0.93800 0.90790 0.93011 1.22853 0.99648 0.93627 1.01416 1.22815 0.99356 0.95869 0.97730 1.21389 0.94014 0.89573 0.94008 1.86419 1.50231 1.51915 1.51249 1.20281 0.93935 0.92727 0.88651 1.18065 0.94776 1.04039 0.89129 1.21305 0.94971 0.99184 0.97440 1.21267 1.00956 1.00491 0.92293 1.21596 0.92065 0.97671 1.00725 1.21338 0.98069 1.00354 0.95242 1.21113 0.97883 0.94966 0.93334 0.91673 0.92524 0.95091 0.75214 0.75054 0.91399 0.91002 0.83992 0.85280 0.91788 0.92102 0.75061 0.87470 0.83749 0.82442 0.83259 0.86520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.58 13.29 21.45 0.28 -51.30 16 2 C 0.03 1.44 5.46 84.66 0.46 1.90 16 3 Si 0.97 43.52 29.54 68.60 2.03 45.54 16 4 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 5 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 6 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 7 C -0.55 -31.22 9.39 25.60 0.24 -30.98 16 8 H 0.05 2.76 7.81 -2.91 -0.02 2.74 16 9 C 0.26 13.91 5.95 85.63 0.51 14.42 16 10 N -0.33 -15.74 3.59 -338.01 -1.21 -16.96 16 11 N -0.33 -14.22 12.48 -56.41 -0.70 -14.93 16 12 C 0.08 2.63 11.48 85.59 0.98 3.61 16 13 C -0.32 -11.45 6.13 -19.94 -0.12 -11.57 16 14 C 0.60 18.84 7.69 86.59 0.67 19.50 16 15 O -0.57 -20.78 12.96 -4.13 -0.05 -20.84 16 16 N -0.71 -15.19 5.54 -470.36 -2.61 -17.80 16 17 C 0.14 2.61 5.72 85.63 0.49 3.10 16 18 C -0.16 -2.07 9.63 25.64 0.25 -1.83 16 19 C -0.14 -1.90 9.89 25.64 0.25 -1.65 16 20 C 0.09 1.21 6.92 71.24 0.49 1.71 16 21 O -0.59 -8.72 13.64 -148.98 -2.03 -10.75 16 22 C 0.18 7.75 6.50 41.43 0.27 8.02 16 23 C -0.06 -2.41 5.25 -20.10 -0.11 -2.52 16 24 C -0.11 -4.32 8.52 22.53 0.19 -4.13 16 25 C -0.13 -4.24 10.03 22.23 0.22 -4.02 16 26 C -0.10 -2.87 10.04 22.33 0.22 -2.65 16 27 C -0.13 -4.02 10.03 22.23 0.22 -3.79 16 28 C -0.05 -2.00 7.54 22.53 0.17 -1.83 16 29 H 0.27 14.39 8.31 -92.71 -0.77 13.62 16 30 H 0.06 3.02 5.08 -2.39 -0.01 3.01 16 31 H 0.03 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.23 4.63 7.49 -2.91 -0.02 4.61 16 33 H 0.41 6.45 7.41 -92.71 -0.69 5.76 16 34 H 0.07 1.37 8.14 -2.39 -0.02 1.36 16 35 H 0.07 1.40 5.42 -2.39 -0.01 1.39 16 36 H 0.14 1.38 8.06 -2.91 -0.02 1.36 16 37 H 0.13 1.57 8.06 -2.91 -0.02 1.54 16 38 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.06 0.87 5.64 -2.39 -0.01 0.85 16 40 H 0.40 2.37 9.12 -74.06 -0.68 1.70 16 41 H 0.11 4.39 6.53 -2.91 -0.02 4.37 16 42 H 0.14 3.81 8.06 -2.91 -0.02 3.79 16 43 H 0.16 3.11 8.06 -2.91 -0.02 3.08 16 44 H 0.15 3.53 8.06 -2.91 -0.02 3.51 16 45 H 0.12 4.42 6.78 -2.91 -0.02 4.40 16 Total: -1.00 -74.42 382.83 0.81 -73.61 By element: Atomic # 1 Polarization: 26.42 SS G_CDS: -0.31 Total: 26.11 kcal Atomic # 6 Polarization: -18.12 SS G_CDS: 5.42 Total: -12.70 kcal Atomic # 7 Polarization: -96.74 SS G_CDS: -4.24 Total: -100.98 kcal Atomic # 8 Polarization: -29.50 SS G_CDS: -2.09 Total: -31.59 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.54 kcal Total: -74.42 0.81 -73.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001469971792.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.109 kcal (2) G-P(sol) polarization free energy of solvation -74.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.613 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds