Wall clock time and date at job start Sat Apr 11 2020 06:17:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 119.99628 * 2 1 4 4 H 1.48500 * 109.46937 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47237 * 299.99612 * 3 2 1 6 6 H 1.48498 * 109.47345 * 59.99938 * 3 2 1 7 7 C 1.37869 * 120.00292 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00043 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99817 * 0.02562 * 7 2 1 10 10 N 1.46507 * 109.46849 * 180.02562 * 9 7 2 11 11 N 1.39903 * 125.80835 * 89.97846 * 10 9 7 12 12 C 1.30460 * 109.21774 * 180.02562 * 11 10 9 13 13 C 1.41082 * 108.30391 * 0.02562 * 12 11 10 14 14 C 1.47174 * 126.48008 * 179.97438 * 13 12 11 15 15 O 1.21646 * 119.99523 * 180.02562 * 14 13 12 16 16 N 1.34774 * 120.00454 * 0.02562 * 14 13 12 17 17 C 1.46502 * 120.00215 * 180.02562 * 16 14 13 18 18 C 1.50701 * 109.46804 * 180.02562 * 17 16 14 19 19 C 1.30994 * 119.99826 * 125.27541 * 18 17 16 20 20 C 1.50702 * 120.00204 * 179.71900 * 19 18 17 21 21 O 1.42897 * 109.47335 * 134.99934 * 20 19 18 22 22 C 1.35178 * 125.80353 * 270.28837 * 10 9 7 23 23 C 1.47737 * 126.47393 * 0.02562 * 22 10 9 24 24 C 1.39616 * 120.14882 * 314.89320 * 23 22 10 25 25 C 1.37945 * 119.84957 * 179.79155 * 24 23 22 26 26 C 1.38372 * 120.14776 * 0.46704 * 25 24 23 27 27 C 1.38356 * 120.29938 * 359.78634 * 26 25 24 28 28 C 1.37947 * 120.15254 * 359.97438 * 27 26 25 29 29 H 0.97002 * 120.00747 * 0.02562 * 1 2 3 30 30 H 1.08999 * 109.47262 * 60.00590 * 9 7 2 31 31 H 1.09001 * 109.47445 * 299.99844 * 9 7 2 32 32 H 1.08005 * 125.85104 * 180.02562 * 12 11 10 33 33 H 0.96997 * 119.99865 * 0.02562 * 16 14 13 34 34 H 1.08998 * 109.47066 * 59.99906 * 17 16 14 35 35 H 1.09001 * 109.47002 * 300.00046 * 17 16 14 36 36 H 1.08002 * 119.99761 * 304.99301 * 18 17 16 37 37 H 1.08002 * 120.00350 * 359.72370 * 19 18 17 38 38 H 1.09001 * 109.46998 * 255.00367 * 20 19 18 39 39 H 1.09002 * 109.46470 * 15.00112 * 20 19 18 40 40 H 0.96702 * 114.00071 * 180.02562 * 21 20 19 41 41 H 1.08002 * 120.07370 * 0.02991 * 24 23 22 42 42 H 1.08004 * 119.92867 * 180.23512 * 25 24 23 43 43 H 1.08000 * 119.84527 * 179.76616 * 26 25 24 44 44 H 1.08001 * 119.92240 * 179.97438 * 27 26 25 45 45 H 1.07998 * 120.07646 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3465 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1939 0.0005 8 1 3.0845 -1.1939 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2032 -3.6126 0.0018 11 7 2.7346 -4.2339 1.1370 12 6 3.5477 -5.1841 0.7656 13 6 3.5765 -5.2165 -0.6446 14 6 4.3637 -6.1350 -1.4828 15 8 4.2995 -6.0582 -2.6951 16 7 5.1557 -7.0613 -0.9073 17 6 5.9397 -7.9753 -1.7417 18 6 6.7331 -8.9049 -0.8600 19 6 6.6241 -10.2016 -1.0097 20 6 7.4223 -11.1312 -0.1322 21 8 6.5802 -12.1880 0.3324 22 6 2.7221 -4.2105 -1.0939 23 6 2.4367 -3.8644 -2.5015 24 6 1.1226 -3.6394 -2.9157 25 6 0.8635 -3.3124 -4.2305 26 6 1.9017 -3.2166 -5.1403 27 6 3.2058 -3.4435 -4.7377 28 6 3.4794 -3.7665 -3.4248 29 1 -0.4851 0.8400 -0.0004 30 1 0.6248 -2.5571 -0.8897 31 1 0.6240 -2.5567 0.8903 32 1 4.1036 -5.8345 1.4247 33 1 5.2066 -7.1228 0.0594 34 1 6.6203 -7.4005 -2.3698 35 1 5.2681 -8.5581 -2.3723 36 1 7.3949 -8.5018 -0.1077 37 1 5.9624 -10.6047 -1.7620 38 1 8.2494 -11.5507 -0.7049 39 1 7.8149 -10.5777 0.7209 40 1 7.0286 -12.8257 0.9046 41 1 0.3110 -3.7175 -2.2074 42 1 -0.1522 -3.1343 -4.5515 43 1 1.6930 -2.9639 -6.1694 44 1 4.0114 -3.3675 -5.4530 45 1 4.4979 -3.9429 -3.1118 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001469971795.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:32 Heat of formation + Delta-G solvation = 29.312922 kcal Electronic energy + Delta-G solvation = -28533.957972 eV Core-core repulsion = 24518.316731 eV Total energy + Delta-G solvation = -4015.641241 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.85981 -38.88200 -38.29963 -37.59356 -35.61615 -33.91561 -33.16125 -32.11301 -31.38578 -30.39215 -28.92980 -27.94493 -27.08856 -24.39119 -23.32861 -22.63842 -22.10420 -21.58154 -20.35037 -19.66535 -19.14883 -17.80765 -17.40716 -16.75729 -16.24688 -16.00744 -15.55536 -15.39592 -15.06064 -14.80756 -14.76419 -14.33527 -13.97727 -13.95008 -13.60386 -13.24186 -13.14512 -13.01511 -12.83810 -12.56249 -12.36682 -12.25474 -12.07261 -11.69924 -11.37551 -11.11178 -10.98823 -10.92947 -10.75759 -10.58871 -10.35650 -10.30604 -9.91184 -9.71537 -9.35426 -9.11243 -8.90392 -8.68977 -8.36180 -8.16405 -7.77049 -6.31608 -4.38247 1.38675 1.62170 1.94904 2.36595 2.75623 3.17884 3.18586 3.26297 3.33354 3.63048 3.88122 3.92012 4.26208 4.35562 4.58742 4.65517 4.89419 4.93042 4.99816 5.02389 5.08243 5.23142 5.36565 5.37912 5.43632 5.48982 5.53319 5.67300 5.73895 5.91263 5.99098 6.21054 6.21310 6.28441 6.36093 6.50756 6.57287 6.69366 6.84682 6.92291 6.94826 7.02462 7.11267 7.18302 7.41151 7.55340 7.72404 7.75309 7.78731 8.31038 8.60398 8.65887 9.27909 10.76849 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.013032 B = 0.002755 C = 0.002449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2148.077385 B =10160.231186 C =11429.745186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.069 3.931 3 Si 0.906 3.094 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.280 1.280 7 C -0.535 4.535 8 H 0.065 0.935 9 C 0.245 3.755 10 N -0.305 5.305 11 N -0.289 5.289 12 C 0.058 3.942 13 C -0.316 4.316 14 C 0.599 3.401 15 O -0.545 6.545 16 N -0.732 5.732 17 C 0.155 3.845 18 C -0.159 4.159 19 C -0.140 4.140 20 C 0.104 3.896 21 O -0.570 6.570 22 C 0.198 3.802 23 C -0.031 4.031 24 C -0.086 4.086 25 C -0.129 4.129 26 C -0.111 4.111 27 C -0.133 4.133 28 C -0.039 4.039 29 H 0.268 0.732 30 H 0.063 0.937 31 H 0.058 0.942 32 H 0.178 0.822 33 H 0.399 0.601 34 H 0.075 0.925 35 H 0.070 0.930 36 H 0.117 0.883 37 H 0.119 0.881 38 H 0.056 0.944 39 H 0.053 0.947 40 H 0.381 0.619 41 H 0.123 0.877 42 H 0.121 0.879 43 H 0.117 0.883 44 H 0.119 0.881 45 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.710 -17.085 -3.700 21.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.135 4.135 3 Si 0.733 3.267 4 H -0.195 1.195 5 H -0.205 1.205 6 H -0.206 1.206 7 C -0.574 4.574 8 H 0.083 0.917 9 C 0.128 3.872 10 N -0.081 5.081 11 N -0.109 5.109 12 C -0.128 4.128 13 C -0.332 4.332 14 C 0.389 3.611 15 O -0.424 6.424 16 N -0.384 5.384 17 C 0.031 3.969 18 C -0.178 4.178 19 C -0.159 4.159 20 C 0.027 3.973 21 O -0.376 6.376 22 C 0.061 3.939 23 C -0.032 4.032 24 C -0.105 4.105 25 C -0.147 4.147 26 C -0.129 4.129 27 C -0.151 4.151 28 C -0.059 4.059 29 H 0.078 0.922 30 H 0.081 0.919 31 H 0.076 0.924 32 H 0.195 0.805 33 H 0.233 0.767 34 H 0.093 0.907 35 H 0.088 0.912 36 H 0.135 0.865 37 H 0.137 0.863 38 H 0.074 0.926 39 H 0.071 0.929 40 H 0.228 0.772 41 H 0.141 0.859 42 H 0.139 0.861 43 H 0.135 0.865 44 H 0.137 0.863 45 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 10.407 -15.833 -3.854 19.335 hybrid contribution 1.285 0.195 0.339 1.343 sum 11.692 -15.638 -3.515 19.840 Atomic orbital electron populations 1.69911 1.06000 1.27707 1.49043 1.24885 0.94988 0.99421 0.94232 0.86295 0.80083 0.82449 0.77882 1.19528 1.20524 1.20574 1.21235 0.93722 0.89312 1.53112 0.91683 1.20072 0.86272 0.80391 1.00458 1.49647 1.32042 1.25051 1.01337 1.77120 1.14326 1.10282 1.09215 1.23671 0.98474 0.97394 0.93278 1.19820 1.12932 1.07122 0.93290 1.17246 0.77831 0.78949 0.87037 1.90771 1.66089 1.71557 1.13960 1.45691 1.46950 1.35704 1.10077 1.20200 0.93588 0.90715 0.92380 1.22906 0.99986 0.94403 1.00470 1.22693 0.99812 0.93918 0.99480 1.21153 0.91886 0.88201 0.96102 1.86529 1.40530 1.40062 1.70455 1.19769 0.93461 0.92174 0.88450 1.17845 0.93912 1.02410 0.89075 1.21239 0.95536 0.97473 0.96224 1.20906 0.99102 1.01491 0.93184 1.21142 0.93003 0.99661 0.99138 1.20925 0.96541 1.01831 0.95830 1.21044 0.98631 0.93943 0.92250 0.92202 0.91915 0.92419 0.80507 0.76734 0.90680 0.91163 0.86490 0.86291 0.92578 0.92905 0.77177 0.85939 0.86119 0.86525 0.86328 0.85723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.70 13.29 55.43 0.74 -23.96 16 2 C 0.07 1.86 5.46 -17.82 -0.10 1.76 16 3 Si 0.91 21.16 29.54 -169.99 -5.02 16.14 16 4 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 5 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 6 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.54 -14.64 9.39 -34.44 -0.32 -14.97 16 8 H 0.06 1.84 7.81 -52.49 -0.41 1.43 16 9 C 0.24 6.16 5.95 -5.19 -0.03 6.13 16 10 N -0.30 -6.98 3.59 -58.19 -0.21 -7.19 16 11 N -0.29 -6.18 12.48 30.82 0.38 -5.79 16 12 C 0.06 0.99 11.48 -17.06 -0.20 0.80 16 13 C -0.32 -5.84 6.12 -104.75 -0.64 -6.48 16 14 C 0.60 9.94 7.69 -12.63 -0.10 9.84 16 15 O -0.55 -10.28 12.95 5.24 0.07 -10.21 16 16 N -0.73 -8.92 5.54 -62.64 -0.35 -9.27 16 17 C 0.15 1.60 6.11 -5.19 -0.03 1.57 16 18 C -0.16 -1.25 9.22 -36.02 -0.33 -1.58 16 19 C -0.14 -1.11 9.50 -36.02 -0.34 -1.45 16 20 C 0.10 0.66 7.46 36.01 0.27 0.93 16 21 O -0.57 -4.34 13.64 -35.23 -0.48 -4.82 16 22 C 0.20 4.19 6.50 -82.07 -0.53 3.66 16 23 C -0.03 -0.62 5.25 -104.99 -0.55 -1.17 16 24 C -0.09 -1.65 8.52 -39.17 -0.33 -1.98 16 25 C -0.13 -2.15 10.03 -39.64 -0.40 -2.55 16 26 C -0.11 -1.72 10.04 -39.49 -0.40 -2.11 16 27 C -0.13 -2.17 10.03 -39.64 -0.40 -2.57 16 28 C -0.04 -0.74 7.54 -39.17 -0.30 -1.04 16 29 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 30 H 0.06 1.57 5.08 -51.93 -0.26 1.31 16 31 H 0.06 1.53 8.14 -51.93 -0.42 1.11 16 32 H 0.18 2.15 7.49 -52.48 -0.39 1.75 16 33 H 0.40 3.95 7.41 -40.82 -0.30 3.65 16 34 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.07 0.79 7.79 -51.93 -0.40 0.39 16 36 H 0.12 0.75 7.90 -52.49 -0.41 0.33 16 37 H 0.12 1.02 7.84 -52.49 -0.41 0.60 16 38 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 39 H 0.05 0.27 7.86 -51.93 -0.41 -0.14 16 40 H 0.38 1.04 9.12 45.56 0.42 1.45 16 41 H 0.12 2.35 6.53 -52.49 -0.34 2.01 16 42 H 0.12 1.71 8.06 -52.48 -0.42 1.29 16 43 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 44 H 0.12 1.60 8.06 -52.49 -0.42 1.18 16 45 H 0.12 2.34 6.77 -52.49 -0.36 1.99 16 LS Contribution 387.18 15.07 5.83 5.83 Total: -1.00 -33.49 387.18 -8.73 -42.21 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: -4.96 Total: 8.27 kcal Atomic # 6 Polarization: -6.49 SS G_CDS: -4.73 Total: -11.22 kcal Atomic # 7 Polarization: -46.78 SS G_CDS: 0.57 Total: -46.21 kcal Atomic # 8 Polarization: -14.61 SS G_CDS: -0.41 Total: -15.03 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -33.49 -8.73 -42.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001469971795.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.525 kcal (2) G-P(sol) polarization free energy of solvation -33.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.212 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds