Wall clock time and date at job start Sat Apr 11 2020 06:17:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 119.99628 * 2 1 4 4 H 1.48500 * 109.46937 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47237 * 299.99612 * 3 2 1 6 6 H 1.48498 * 109.47345 * 59.99938 * 3 2 1 7 7 C 1.37869 * 120.00292 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00043 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99817 * 0.02562 * 7 2 1 10 10 N 1.46507 * 109.46849 * 180.02562 * 9 7 2 11 11 N 1.39903 * 125.80835 * 89.97846 * 10 9 7 12 12 C 1.30460 * 109.21774 * 180.02562 * 11 10 9 13 13 C 1.41082 * 108.30391 * 0.02562 * 12 11 10 14 14 C 1.47174 * 126.48008 * 179.97438 * 13 12 11 15 15 O 1.21646 * 119.99523 * 180.02562 * 14 13 12 16 16 N 1.34774 * 120.00454 * 0.02562 * 14 13 12 17 17 C 1.46502 * 120.00215 * 180.02562 * 16 14 13 18 18 C 1.50701 * 109.46804 * 180.02562 * 17 16 14 19 19 C 1.30994 * 119.99826 * 125.27541 * 18 17 16 20 20 C 1.50702 * 120.00204 * 179.71900 * 19 18 17 21 21 O 1.42897 * 109.47335 * 134.99934 * 20 19 18 22 22 C 1.35178 * 125.80353 * 270.28837 * 10 9 7 23 23 C 1.47737 * 126.47393 * 0.02562 * 22 10 9 24 24 C 1.39616 * 120.14882 * 314.89320 * 23 22 10 25 25 C 1.37945 * 119.84957 * 179.79155 * 24 23 22 26 26 C 1.38372 * 120.14776 * 0.46704 * 25 24 23 27 27 C 1.38356 * 120.29938 * 359.78634 * 26 25 24 28 28 C 1.37947 * 120.15254 * 359.97438 * 27 26 25 29 29 H 0.97002 * 120.00747 * 0.02562 * 1 2 3 30 30 H 1.08999 * 109.47262 * 60.00590 * 9 7 2 31 31 H 1.09001 * 109.47445 * 299.99844 * 9 7 2 32 32 H 1.08005 * 125.85104 * 180.02562 * 12 11 10 33 33 H 0.96997 * 119.99865 * 0.02562 * 16 14 13 34 34 H 1.08998 * 109.47066 * 59.99906 * 17 16 14 35 35 H 1.09001 * 109.47002 * 300.00046 * 17 16 14 36 36 H 1.08002 * 119.99761 * 304.99301 * 18 17 16 37 37 H 1.08002 * 120.00350 * 359.72370 * 19 18 17 38 38 H 1.09001 * 109.46998 * 255.00367 * 20 19 18 39 39 H 1.09002 * 109.46470 * 15.00112 * 20 19 18 40 40 H 0.96702 * 114.00071 * 180.02562 * 21 20 19 41 41 H 1.08002 * 120.07370 * 0.02991 * 24 23 22 42 42 H 1.08004 * 119.92867 * 180.23512 * 25 24 23 43 43 H 1.08000 * 119.84527 * 179.76616 * 26 25 24 44 44 H 1.08001 * 119.92240 * 179.97438 * 27 26 25 45 45 H 1.07998 * 120.07646 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3465 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1939 0.0005 8 1 3.0845 -1.1939 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2032 -3.6126 0.0018 11 7 2.7346 -4.2339 1.1370 12 6 3.5477 -5.1841 0.7656 13 6 3.5765 -5.2165 -0.6446 14 6 4.3637 -6.1350 -1.4828 15 8 4.2995 -6.0582 -2.6951 16 7 5.1557 -7.0613 -0.9073 17 6 5.9397 -7.9753 -1.7417 18 6 6.7331 -8.9049 -0.8600 19 6 6.6241 -10.2016 -1.0097 20 6 7.4223 -11.1312 -0.1322 21 8 6.5802 -12.1880 0.3324 22 6 2.7221 -4.2105 -1.0939 23 6 2.4367 -3.8644 -2.5015 24 6 1.1226 -3.6394 -2.9157 25 6 0.8635 -3.3124 -4.2305 26 6 1.9017 -3.2166 -5.1403 27 6 3.2058 -3.4435 -4.7377 28 6 3.4794 -3.7665 -3.4248 29 1 -0.4851 0.8400 -0.0004 30 1 0.6248 -2.5571 -0.8897 31 1 0.6240 -2.5567 0.8903 32 1 4.1036 -5.8345 1.4247 33 1 5.2066 -7.1228 0.0594 34 1 6.6203 -7.4005 -2.3698 35 1 5.2681 -8.5581 -2.3723 36 1 7.3949 -8.5018 -0.1077 37 1 5.9624 -10.6047 -1.7620 38 1 8.2494 -11.5507 -0.7049 39 1 7.8149 -10.5777 0.7209 40 1 7.0286 -12.8257 0.9046 41 1 0.3110 -3.7175 -2.2074 42 1 -0.1522 -3.1343 -4.5515 43 1 1.6930 -2.9639 -6.1694 44 1 4.0114 -3.3675 -5.4530 45 1 4.4979 -3.9429 -3.1118 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001469971795.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:31 Heat of formation + Delta-G solvation = 5.681524 kcal Electronic energy + Delta-G solvation = -28534.982707 eV Core-core repulsion = 24518.316731 eV Total energy + Delta-G solvation = -4016.665975 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.37143 -40.13919 -39.65880 -38.15309 -36.50420 -35.81883 -34.21916 -33.66374 -32.94509 -31.75476 -30.19610 -29.42601 -28.42674 -25.75319 -24.69140 -23.96277 -23.52902 -22.88988 -21.30329 -21.00648 -20.35619 -19.05367 -18.71230 -18.13551 -17.56004 -17.16340 -16.86003 -16.58902 -16.46058 -16.02816 -15.85682 -15.51880 -15.37633 -15.28340 -14.96654 -14.56020 -14.50070 -14.30466 -13.97385 -13.94812 -13.62157 -13.47683 -13.44358 -13.04817 -13.00035 -12.75971 -12.39981 -12.29387 -11.99938 -11.93857 -11.85957 -11.79248 -11.26583 -10.85971 -10.76261 -10.66502 -10.27535 -9.97243 -9.75843 -9.68093 -9.21700 -8.38556 -6.53767 -0.04813 0.57544 0.92098 0.98950 1.28611 1.33763 1.35775 1.47238 1.64135 2.30671 2.51814 2.52745 2.93406 2.97537 3.42436 3.48055 3.70541 4.00047 4.03911 4.08132 4.09750 4.13531 4.26124 4.30435 4.41772 4.51848 4.56625 4.59615 4.67173 4.68878 4.77218 4.82141 4.89363 4.94141 5.01229 5.17393 5.44677 5.45447 5.54020 5.60114 5.60650 5.62168 5.63049 5.73815 5.74758 5.96843 6.10828 6.52484 6.63068 6.79103 6.93082 7.16069 7.36886 8.69767 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.013032 B = 0.002755 C = 0.002449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2148.077385 B =10160.231186 C =11429.745186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.026 3.974 3 Si 0.968 3.032 4 H -0.274 1.274 5 H -0.268 1.268 6 H -0.270 1.270 7 C -0.551 4.551 8 H 0.047 0.953 9 C 0.262 3.738 10 N -0.331 5.331 11 N -0.329 5.329 12 C 0.080 3.920 13 C -0.317 4.317 14 C 0.599 3.401 15 O -0.570 6.570 16 N -0.712 5.712 17 C 0.154 3.846 18 C -0.155 4.155 19 C -0.143 4.143 20 C 0.102 3.898 21 O -0.596 6.596 22 C 0.179 3.821 23 C -0.059 4.059 24 C -0.111 4.111 25 C -0.133 4.133 26 C -0.103 4.103 27 C -0.132 4.132 28 C -0.054 4.054 29 H 0.274 0.726 30 H 0.057 0.943 31 H 0.031 0.969 32 H 0.231 0.769 33 H 0.412 0.588 34 H 0.074 0.926 35 H 0.059 0.941 36 H 0.139 0.861 37 H 0.106 0.894 38 H 0.072 0.928 39 H 0.070 0.930 40 H 0.400 0.600 41 H 0.107 0.893 42 H 0.145 0.855 43 H 0.158 0.842 44 H 0.150 0.850 45 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.757 -17.718 -4.485 22.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.176 4.176 3 Si 0.792 3.208 4 H -0.198 1.198 5 H -0.193 1.193 6 H -0.195 1.195 7 C -0.589 4.589 8 H 0.065 0.935 9 C 0.144 3.856 10 N -0.108 5.108 11 N -0.149 5.149 12 C -0.106 4.106 13 C -0.332 4.332 14 C 0.388 3.612 15 O -0.451 6.451 16 N -0.364 5.364 17 C 0.031 3.969 18 C -0.173 4.173 19 C -0.162 4.162 20 C 0.025 3.975 21 O -0.405 6.405 22 C 0.044 3.956 23 C -0.061 4.061 24 C -0.129 4.129 25 C -0.150 4.150 26 C -0.121 4.121 27 C -0.150 4.150 28 C -0.073 4.073 29 H 0.083 0.917 30 H 0.075 0.925 31 H 0.049 0.951 32 H 0.247 0.753 33 H 0.249 0.751 34 H 0.092 0.908 35 H 0.077 0.923 36 H 0.157 0.843 37 H 0.125 0.875 38 H 0.090 0.910 39 H 0.088 0.912 40 H 0.251 0.749 41 H 0.125 0.875 42 H 0.163 0.837 43 H 0.176 0.824 44 H 0.168 0.832 45 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 12.479 -16.515 -4.609 21.206 hybrid contribution 0.698 0.222 0.528 0.902 sum 13.176 -16.293 -4.082 21.348 Atomic orbital electron populations 1.69990 1.07155 1.28838 1.49237 1.25678 0.95841 1.02505 0.93551 0.85352 0.78474 0.78450 0.78529 1.19845 1.19337 1.19530 1.21339 0.92956 0.90840 1.53798 0.93461 1.19556 0.86403 0.80898 0.98741 1.49351 1.33269 1.25711 1.02422 1.77053 1.16223 1.12091 1.09518 1.24482 0.96589 0.96058 0.93478 1.20165 1.12322 1.06616 0.94147 1.17058 0.78263 0.79446 0.86462 1.90752 1.67030 1.72381 1.14911 1.45538 1.45497 1.34362 1.11034 1.20277 0.93330 0.90585 0.92664 1.22780 1.00163 0.93744 1.00622 1.22847 0.99591 0.94421 0.99391 1.21230 0.91645 0.87974 0.96618 1.86468 1.41921 1.40957 1.71198 1.20281 0.93901 0.92737 0.88679 1.18076 0.94807 1.04061 0.89142 1.21308 0.94973 0.99202 0.97465 1.21272 1.00976 1.00504 0.92281 1.21602 0.92059 0.97662 1.00733 1.21343 0.98096 1.00356 0.95231 1.21121 0.97899 0.94924 0.93344 0.91667 0.92548 0.95090 0.75266 0.75119 0.90813 0.92274 0.84291 0.87550 0.90970 0.91228 0.74933 0.87481 0.83720 0.82396 0.83194 0.86463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.93 13.29 21.44 0.28 -51.65 16 2 C 0.03 1.42 5.46 84.65 0.46 1.88 16 3 Si 0.97 43.73 29.54 68.60 2.03 45.76 16 4 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 5 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 6 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 7 C -0.55 -31.44 9.39 25.60 0.24 -31.20 16 8 H 0.05 2.80 7.81 -2.91 -0.02 2.77 16 9 C 0.26 14.06 5.95 85.63 0.51 14.57 16 10 N -0.33 -15.98 3.59 -338.01 -1.21 -17.20 16 11 N -0.33 -14.44 12.48 -56.41 -0.70 -15.14 16 12 C 0.08 2.69 11.48 85.59 0.98 3.68 16 13 C -0.32 -11.81 6.12 -19.95 -0.12 -11.93 16 14 C 0.60 19.61 7.69 86.59 0.67 20.27 16 15 O -0.57 -21.59 12.95 -4.18 -0.05 -21.64 16 16 N -0.71 -16.18 5.54 -470.33 -2.61 -18.79 16 17 C 0.15 2.98 6.11 85.63 0.52 3.50 16 18 C -0.15 -2.06 9.22 25.65 0.24 -1.82 16 19 C -0.14 -2.00 9.50 25.65 0.24 -1.76 16 20 C 0.10 1.03 7.46 71.24 0.53 1.56 16 21 O -0.60 -7.90 13.64 -148.98 -2.03 -9.93 16 22 C 0.18 7.91 6.50 41.43 0.27 8.18 16 23 C -0.06 -2.49 5.25 -20.10 -0.11 -2.60 16 24 C -0.11 -4.44 8.52 22.53 0.19 -4.25 16 25 C -0.13 -4.35 10.03 22.23 0.22 -4.13 16 26 C -0.10 -2.94 10.04 22.33 0.22 -2.72 16 27 C -0.13 -4.11 10.03 22.23 0.22 -3.89 16 28 C -0.05 -2.04 7.54 22.53 0.17 -1.87 16 29 H 0.27 14.48 8.31 -92.71 -0.77 13.71 16 30 H 0.06 3.05 5.08 -2.39 -0.01 3.03 16 31 H 0.03 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.23 4.86 7.49 -2.91 -0.02 4.84 16 33 H 0.41 7.02 7.41 -92.71 -0.69 6.34 16 34 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.06 1.30 7.79 -2.39 -0.02 1.28 16 36 H 0.14 1.27 7.90 -2.91 -0.02 1.25 16 37 H 0.11 1.73 7.84 -2.91 -0.02 1.71 16 38 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 39 H 0.07 0.48 7.86 -2.39 -0.02 0.46 16 40 H 0.40 1.37 9.12 -74.06 -0.68 0.69 16 41 H 0.11 4.47 6.53 -2.91 -0.02 4.45 16 42 H 0.15 3.92 8.06 -2.91 -0.02 3.90 16 43 H 0.16 3.21 8.06 -2.91 -0.02 3.18 16 44 H 0.15 3.63 8.06 -2.91 -0.02 3.60 16 45 H 0.12 4.52 6.77 -2.91 -0.02 4.50 16 Total: -1.00 -76.10 387.18 0.85 -75.24 By element: Atomic # 1 Polarization: 26.16 SS G_CDS: -0.32 Total: 25.84 kcal Atomic # 6 Polarization: -17.97 SS G_CDS: 5.47 Total: -12.50 kcal Atomic # 7 Polarization: -98.54 SS G_CDS: -4.24 Total: -102.77 kcal Atomic # 8 Polarization: -29.49 SS G_CDS: -2.09 Total: -31.57 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Total: -76.10 0.85 -75.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001469971795.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.925 kcal (2) G-P(sol) polarization free energy of solvation -76.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.243 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds