Wall clock time and date at job start Sat Apr 11 2020 06:17:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86804 * 120.00005 * 2 1 4 4 H 1.48497 * 109.47298 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.46798 * 300.00106 * 3 2 1 6 6 H 1.48501 * 109.47127 * 59.99725 * 3 2 1 7 7 C 1.38810 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00396 * 180.02562 * 7 2 1 9 9 N 1.36937 * 119.99862 * 359.97438 * 7 2 1 10 10 C 1.46498 * 119.99982 * 180.02562 * 9 7 2 11 11 H 1.08994 * 109.47339 * 35.00216 * 10 9 7 12 12 C 1.52997 * 109.47192 * 155.00223 * 10 9 7 13 13 N 1.46501 * 109.47266 * 304.99978 * 12 10 9 14 14 C 1.34770 * 120.00439 * 179.97438 * 13 12 10 15 15 O 1.21661 * 119.99684 * 359.97438 * 14 13 12 16 16 C 1.47132 * 120.00651 * 180.02562 * 14 13 12 17 17 N 1.35889 * 126.61424 * 354.66667 * 16 14 13 18 18 C 1.29929 * 108.74387 * 180.13779 * 17 16 14 19 19 O 1.34062 * 109.77520 * 359.57066 * 18 17 16 20 20 C 1.34757 * 108.23540 * 0.26999 * 19 18 17 21 21 C 1.47583 * 126.75861 * 179.97438 * 20 19 18 22 22 C 1.39684 * 120.15456 * 127.07761 * 21 20 19 23 23 C 1.37939 * 119.84003 * 179.70089 * 22 21 20 24 24 C 1.38372 * 120.15184 * 0.57273 * 23 22 21 25 25 C 1.38373 * 120.31868 * 359.72371 * 24 23 22 26 26 C 1.37932 * 120.15548 * 359.97438 * 25 24 23 27 27 C 1.52994 * 109.47252 * 275.00186 * 10 9 7 28 28 C 1.53001 * 117.50347 * 128.74690 * 27 10 9 29 29 C 1.53001 * 117.49780 * 60.08937 * 27 10 9 30 30 H 0.97005 * 120.00346 * 0.02562 * 1 2 3 31 31 H 0.96998 * 120.00018 * 0.02562 * 9 7 2 32 32 H 1.09002 * 109.47359 * 185.00105 * 12 10 9 33 33 H 1.09003 * 109.47241 * 65.00112 * 12 10 9 34 34 H 0.97000 * 119.99993 * 0.02562 * 13 12 10 35 35 H 1.07992 * 125.11670 * 179.84433 * 18 17 16 36 36 H 1.08001 * 120.08404 * 359.97438 * 22 21 20 37 37 H 1.08001 * 119.92145 * 180.29827 * 23 22 21 38 38 H 1.08000 * 119.83905 * 179.73949 * 24 23 22 39 39 H 1.08003 * 119.92448 * 179.97438 * 25 24 23 40 40 H 1.08002 * 120.07710 * 180.02562 * 26 25 24 41 41 H 1.09004 * 115.55460 * 274.41784 * 27 10 9 42 42 H 1.09004 * 117.49462 * 0.02562 * 28 27 10 43 43 H 1.08991 * 117.50442 * 145.01752 * 28 27 10 44 44 H 1.09009 * 117.49735 * 214.97623 * 29 27 10 45 45 H 1.09000 * 117.50268 * 359.97255 * 29 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8913 2.3964 -1.2125 6 1 1.8913 2.3965 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6567 -0.0005 11 1 2.9688 -3.5505 0.5889 12 6 1.1810 -4.7521 0.6090 13 7 0.7343 -4.3355 1.9406 14 6 -0.0555 -5.1473 2.6711 15 8 -0.3979 -6.2259 2.2245 16 6 -0.5046 -4.7287 4.0082 17 7 -0.1263 -3.6073 4.6761 18 6 -0.7302 -3.5826 5.8262 19 8 -1.5180 -4.6605 5.9481 20 6 -1.3995 -5.3984 4.8267 21 6 -2.0872 -6.6699 4.5294 22 6 -2.8104 -6.8158 3.3432 23 6 -3.4455 -8.0091 3.0689 24 6 -3.3774 -9.0561 3.9711 25 6 -2.6680 -8.9165 5.1509 26 6 -2.0228 -7.7311 5.4354 27 6 2.4221 -4.0355 -1.4375 28 6 3.8823 -4.3890 -1.7267 29 6 3.3030 -3.0620 -2.2231 30 1 -0.4851 0.8401 -0.0004 31 1 0.3556 -2.3881 -0.0005 32 1 1.7559 -5.6745 0.6908 33 1 0.3134 -4.9201 -0.0292 34 1 1.0064 -3.4751 2.2963 35 1 -0.6182 -2.8079 6.5702 36 1 -2.8684 -5.9978 2.6404 37 1 -4.0010 -8.1250 2.1500 38 1 -3.8801 -9.9868 3.7531 39 1 -2.6193 -9.7377 5.8507 40 1 -1.4691 -7.6237 6.3564 41 1 1.6542 -4.5774 -1.9897 42 1 4.5837 -4.3522 -0.8931 43 1 4.0752 -5.1632 -2.4693 44 1 3.1149 -2.9637 -3.2924 45 1 3.6229 -2.1515 -1.7165 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001480022802.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:34 Heat of formation + Delta-G solvation = 54.501435 kcal Electronic energy + Delta-G solvation = -28926.893579 eV Core-core repulsion = 24912.344594 eV Total energy + Delta-G solvation = -4014.548985 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.33030 -39.32376 -38.96123 -37.49018 -34.87584 -34.61493 -33.33562 -32.54133 -31.08863 -30.91990 -29.09919 -27.94280 -24.79349 -23.50523 -23.39015 -22.64549 -22.12945 -21.68589 -21.17477 -20.22093 -19.58227 -18.32859 -17.39313 -17.01061 -16.79091 -16.15180 -15.77076 -15.34365 -15.14727 -14.94952 -14.75981 -14.34429 -14.22258 -13.88104 -13.72647 -13.56502 -13.44728 -13.11945 -12.84323 -12.80663 -12.12579 -11.62422 -11.36163 -11.35810 -11.28465 -11.13596 -10.86468 -10.84514 -10.79184 -10.68936 -10.08122 -10.02016 -9.90433 -9.55429 -9.47051 -9.28657 -9.04576 -8.96091 -8.65287 -8.42584 -7.01729 -5.78454 -3.07770 0.57854 1.29699 1.44262 2.11149 2.47185 3.40723 3.43008 3.47537 3.49470 3.53454 3.66139 4.07894 4.42904 4.46252 4.61678 4.76195 4.79305 4.95796 4.97308 5.24258 5.24333 5.32990 5.41491 5.49477 5.53274 5.57039 5.62951 5.74725 5.76264 5.89147 5.90544 5.99086 6.06916 6.09838 6.18643 6.25990 6.33157 6.36918 6.41859 6.55669 6.61199 6.77444 6.78582 6.89754 6.99266 7.41198 7.68276 7.98429 8.37904 8.52265 9.50410 10.04349 10.40361 11.43479 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.012266 B = 0.003049 C = 0.002636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2282.189984 B = 9180.232058 C =10621.174972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C -0.009 4.009 3 Si 0.902 3.098 4 H -0.281 1.281 5 H -0.293 1.293 6 H -0.292 1.292 7 C -0.235 4.235 8 H 0.071 0.929 9 N -0.716 5.716 10 C 0.193 3.807 11 H 0.055 0.945 12 C 0.119 3.881 13 N -0.692 5.692 14 C 0.593 3.407 15 O -0.540 6.540 16 C -0.044 4.044 17 N -0.450 5.450 18 C 0.176 3.824 19 O -0.194 6.194 20 C 0.066 3.934 21 C -0.022 4.022 22 C -0.046 4.046 23 C -0.121 4.121 24 C -0.103 4.103 25 C -0.129 4.129 26 C -0.090 4.090 27 C -0.158 4.158 28 C -0.196 4.196 29 C -0.156 4.156 30 H 0.254 0.746 31 H 0.385 0.615 32 H 0.068 0.932 33 H 0.066 0.934 34 H 0.419 0.581 35 H 0.256 0.744 36 H 0.127 0.873 37 H 0.129 0.871 38 H 0.124 0.876 39 H 0.126 0.874 40 H 0.124 0.876 41 H 0.091 0.909 42 H 0.086 0.914 43 H 0.081 0.919 44 H 0.079 0.921 45 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.987 -15.420 10.702 19.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.205 4.205 3 Si 0.734 3.266 4 H -0.206 1.206 5 H -0.220 1.220 6 H -0.219 1.219 7 C -0.366 4.366 8 H 0.089 0.911 9 N -0.357 5.357 10 C 0.082 3.918 11 H 0.073 0.927 12 C -0.005 4.005 13 N -0.343 5.343 14 C 0.378 3.622 15 O -0.418 6.418 16 C -0.166 4.166 17 N -0.178 5.178 18 C -0.052 4.052 19 O -0.081 6.081 20 C 0.010 3.990 21 C -0.023 4.023 22 C -0.064 4.064 23 C -0.139 4.139 24 C -0.121 4.121 25 C -0.147 4.147 26 C -0.108 4.108 27 C -0.180 4.180 28 C -0.234 4.234 29 C -0.193 4.193 30 H 0.064 0.936 31 H 0.219 0.781 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.257 0.743 35 H 0.272 0.728 36 H 0.145 0.855 37 H 0.147 0.853 38 H 0.142 0.858 39 H 0.144 0.856 40 H 0.142 0.858 41 H 0.109 0.891 42 H 0.104 0.896 43 H 0.099 0.901 44 H 0.098 0.902 45 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -3.678 -15.531 10.183 18.932 hybrid contribution -0.056 1.244 0.344 1.292 sum -3.734 -14.287 10.527 18.135 Atomic orbital electron populations 1.69669 1.05052 1.25480 1.57371 1.24708 0.95417 0.97537 1.02878 0.86195 0.78828 0.84469 0.77136 1.20588 1.21995 1.21932 1.19185 0.90816 0.83811 1.42806 0.91105 1.42440 1.05810 0.99407 1.88015 1.20045 0.94363 0.86107 0.91245 0.92671 1.21661 0.98718 0.97707 0.82443 1.45810 1.49128 1.21887 1.17446 1.16624 0.79122 0.84229 0.82256 1.90821 1.57816 1.21957 1.71239 1.22123 1.02162 0.93804 0.98495 1.70764 1.23603 1.18598 1.04866 1.28074 0.90169 0.89814 0.97141 1.84466 1.54865 1.30913 1.37817 1.21763 0.98781 0.93745 0.84744 1.17436 0.99814 0.88461 0.96557 1.21118 0.92817 0.98224 0.94245 1.21053 1.00268 0.92850 0.99708 1.21300 0.98120 0.98727 0.93970 1.20991 0.98594 0.97290 0.97799 1.21190 0.98616 0.92649 0.98354 1.23022 0.92154 1.03091 0.99765 1.22961 0.97294 0.99817 1.03347 1.22781 1.03363 0.94061 0.99069 0.93605 0.78061 0.91417 0.91549 0.74306 0.72818 0.85492 0.85338 0.85782 0.85615 0.85809 0.89125 0.89550 0.90096 0.90226 0.87691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.14 13.06 55.49 0.72 -26.42 16 2 C -0.01 -0.25 5.50 -17.43 -0.10 -0.34 16 3 Si 0.90 21.83 29.55 -169.99 -5.02 16.81 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 6 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 7 C -0.24 -6.08 8.63 -15.06 -0.13 -6.21 16 8 H 0.07 1.80 6.91 -52.48 -0.36 1.44 16 9 N -0.72 -16.71 4.54 -53.43 -0.24 -16.95 16 10 C 0.19 3.66 2.70 -67.94 -0.18 3.47 16 11 H 0.06 1.07 7.84 -51.93 -0.41 0.67 16 12 C 0.12 2.08 5.21 -4.04 -0.02 2.06 16 13 N -0.69 -12.59 5.38 -61.47 -0.33 -12.93 16 14 C 0.59 10.75 7.76 -12.65 -0.10 10.66 16 15 O -0.54 -10.29 14.06 5.22 0.07 -10.21 16 16 C -0.04 -0.74 7.05 -82.35 -0.58 -1.32 16 17 N -0.45 -7.08 11.05 -11.04 -0.12 -7.20 16 18 C 0.18 2.03 13.16 51.96 0.68 2.71 16 19 O -0.19 -2.45 10.75 5.10 0.05 -2.39 16 20 C 0.07 0.97 6.83 -35.66 -0.24 0.73 16 21 C -0.02 -0.30 5.21 -105.01 -0.55 -0.85 16 22 C -0.05 -0.62 7.82 -39.15 -0.31 -0.92 16 23 C -0.12 -1.34 10.03 -39.64 -0.40 -1.73 16 24 C -0.10 -0.98 10.04 -39.48 -0.40 -1.38 16 25 C -0.13 -1.23 10.03 -39.64 -0.40 -1.63 16 26 C -0.09 -1.02 9.79 -39.15 -0.38 -1.40 16 27 C -0.16 -2.78 5.36 -90.62 -0.49 -3.26 16 28 C -0.20 -3.00 10.18 -26.70 -0.27 -3.27 16 29 C -0.16 -2.77 9.78 -26.70 -0.26 -3.03 16 30 H 0.25 7.27 8.31 -40.82 -0.34 6.94 16 31 H 0.39 9.88 7.80 -40.82 -0.32 9.56 16 32 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 33 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 34 H 0.42 8.17 7.88 -40.82 -0.32 7.85 16 35 H 0.26 1.53 8.06 -52.49 -0.42 1.11 16 36 H 0.13 1.83 7.78 -52.49 -0.41 1.42 16 37 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 38 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 39 H 0.13 0.86 8.06 -52.48 -0.42 0.43 16 40 H 0.12 1.20 8.06 -52.49 -0.42 0.77 16 41 H 0.09 1.54 8.11 -51.93 -0.42 1.12 16 42 H 0.09 1.28 8.05 -51.93 -0.42 0.86 16 43 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 44 H 0.08 1.34 8.14 -51.92 -0.42 0.92 16 45 H 0.10 2.10 6.23 -51.93 -0.32 1.78 16 LS Contribution 386.55 15.07 5.83 5.83 Total: -1.00 -31.73 386.55 -9.08 -40.80 By element: Atomic # 1 Polarization: 24.32 SS G_CDS: -5.92 Total: 18.40 kcal Atomic # 6 Polarization: -1.62 SS G_CDS: -4.11 Total: -5.74 kcal Atomic # 7 Polarization: -63.52 SS G_CDS: 0.03 Total: -63.49 kcal Atomic # 8 Polarization: -12.73 SS G_CDS: 0.13 Total: -12.60 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -31.73 -9.08 -40.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480022802.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.305 kcal (2) G-P(sol) polarization free energy of solvation -31.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.804 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds