Wall clock time and date at job start Sat Apr 11 2020 06:17:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86799 * 120.00078 * 2 1 4 4 H 1.48500 * 109.47466 * 270.00752 * 3 2 1 5 5 H 1.48510 * 109.46975 * 30.00394 * 3 2 1 6 6 H 1.48501 * 109.47351 * 150.00270 * 3 2 1 7 7 C 1.38808 * 120.00201 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99678 * 359.97438 * 7 2 1 9 9 N 1.36940 * 120.00365 * 179.97438 * 7 2 1 10 10 C 1.46499 * 120.00245 * 180.02562 * 9 7 2 11 11 H 1.09003 * 109.47271 * 325.00078 * 10 9 7 12 12 C 1.52998 * 109.47175 * 204.99940 * 10 9 7 13 13 N 1.46505 * 109.46762 * 54.99835 * 12 10 9 14 14 C 1.34783 * 119.99864 * 179.97438 * 13 12 10 15 15 O 1.21657 * 119.99836 * 0.02562 * 14 13 12 16 16 C 1.47131 * 120.00045 * 180.02562 * 14 13 12 17 17 N 1.35882 * 126.62040 * 5.43933 * 16 14 13 18 18 C 1.29933 * 108.74153 * 180.29166 * 17 16 14 19 19 O 1.34042 * 109.77904 * 359.72834 * 18 17 16 20 20 C 1.34766 * 108.23909 * 0.02562 * 19 18 17 21 21 C 1.47584 * 126.75965 * 179.97438 * 20 19 18 22 22 C 1.39686 * 120.15103 * 231.16581 * 21 20 19 23 23 C 1.37933 * 119.83996 * 179.97438 * 22 21 20 24 24 C 1.38376 * 120.15691 * 359.97438 * 23 22 21 25 25 C 1.38382 * 120.31314 * 0.02835 * 24 23 22 26 26 C 1.37929 * 120.15533 * 359.97438 * 25 24 23 27 27 C 1.53000 * 109.47159 * 84.99729 * 10 9 7 28 28 C 1.52995 * 117.50029 * 8.75185 * 27 10 9 29 29 C 1.52996 * 117.50303 * 300.08936 * 27 10 9 30 30 H 0.97001 * 119.99981 * 359.97438 * 1 2 3 31 31 H 0.96995 * 119.99605 * 359.97438 * 9 7 2 32 32 H 1.08997 * 109.47215 * 295.00562 * 12 10 9 33 33 H 1.08999 * 109.47290 * 174.99287 * 12 10 9 34 34 H 0.96997 * 120.00682 * 359.97438 * 13 12 10 35 35 H 1.08003 * 125.10765 * 179.71499 * 18 17 16 36 36 H 1.08008 * 120.08346 * 0.25593 * 22 21 20 37 37 H 1.08001 * 119.92434 * 179.97438 * 23 22 21 38 38 H 1.07993 * 119.84579 * 180.02562 * 24 23 22 39 39 H 1.07998 * 119.91981 * 179.97438 * 25 24 23 40 40 H 1.08002 * 120.07834 * 179.97438 * 26 25 24 41 41 H 1.09006 * 115.54485 * 154.41688 * 27 10 9 42 42 H 1.09002 * 117.49861 * 359.97438 * 28 27 10 43 43 H 1.08994 * 117.50259 * 145.01944 * 28 27 10 44 44 H 1.08997 * 117.50024 * 214.98067 * 29 27 10 45 45 H 1.09000 * 117.49649 * 359.97438 * 29 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0466 -1.4000 5 1 1.4476 2.6527 0.7002 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0005 9 7 3.3797 -1.2021 -0.0011 10 6 4.1122 -2.4708 -0.0022 11 1 3.5651 -3.2068 0.5870 12 6 5.4996 -2.2592 0.6070 13 7 5.3625 -1.6650 1.9391 14 6 6.4607 -1.3882 2.6698 15 8 7.5658 -1.6315 2.2230 16 6 6.3231 -0.7919 4.0078 17 7 5.1631 -0.5613 4.6770 18 6 5.4436 -0.0187 5.8238 19 8 6.7712 0.1180 5.9484 20 6 7.3512 -0.3596 4.8296 21 6 8.7967 -0.4072 4.5353 22 6 9.2850 0.1075 3.3321 23 6 10.6372 0.0602 3.0639 24 6 11.5093 -0.4948 3.9837 25 6 11.0325 -1.0066 5.1777 26 6 9.6828 -0.9661 5.4591 27 6 4.2577 -2.9744 -1.4396 28 6 3.8368 -2.0282 -2.5657 29 6 2.9740 -3.2462 -2.2264 30 1 -0.4850 0.8401 0.0004 31 1 3.8646 -0.3621 -0.0014 32 1 6.0785 -1.5914 -0.0309 33 1 6.0110 -3.2184 0.6880 34 1 4.4814 -1.4706 2.2952 35 1 4.7163 0.2779 6.5651 36 1 8.6060 0.5455 2.6153 37 1 11.0162 0.4573 2.1338 38 1 12.5671 -0.5289 3.7687 39 1 11.7188 -1.4387 5.8909 40 1 9.3120 -1.3662 6.3912 41 1 5.1094 -3.6292 -1.6243 42 1 3.4558 -1.0469 -2.2826 43 1 4.4112 -2.0606 -3.4915 44 1 2.9812 -4.0794 -2.9290 45 1 2.0257 -3.0666 -1.7198 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001480022803.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:36 Heat of formation + Delta-G solvation = 61.771480 kcal Electronic energy + Delta-G solvation = -29177.707756 eV Core-core repulsion = 25163.474024 eV Total energy + Delta-G solvation = -4014.233732 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.43340 -39.45643 -39.05981 -37.70448 -34.97911 -34.57105 -33.26384 -32.62862 -31.18382 -31.12422 -29.32802 -28.38559 -24.92535 -23.56013 -23.27209 -22.71568 -22.30753 -21.58955 -21.23273 -20.28400 -19.31766 -18.48408 -17.63141 -17.16279 -16.89468 -16.25580 -15.88180 -15.52988 -15.24955 -15.03135 -14.82934 -14.48494 -14.27709 -14.06940 -13.75155 -13.65792 -13.41144 -13.06918 -12.89359 -12.76742 -12.49313 -11.71568 -11.64101 -11.40146 -11.35367 -11.20580 -10.96653 -10.88527 -10.79074 -10.57879 -10.22325 -10.12140 -9.63773 -9.55523 -9.52972 -9.21873 -9.11843 -9.00543 -8.78197 -8.51128 -7.35788 -5.81499 -3.18150 0.47126 1.22421 1.37276 1.99977 2.37487 3.30584 3.34608 3.38495 3.39814 3.43448 3.58269 3.97936 4.36251 4.53195 4.55258 4.68709 4.71669 4.85085 4.89641 5.16031 5.22305 5.24117 5.31393 5.33403 5.45333 5.48325 5.66760 5.68125 5.75742 5.81616 5.85148 5.90506 5.96257 6.01750 6.18747 6.25284 6.28661 6.29782 6.37897 6.56343 6.62935 6.69863 6.77710 7.01719 7.14491 7.30547 7.83930 7.94090 8.36428 8.38472 9.14208 9.86579 10.05353 11.36258 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.012647 B = 0.003272 C = 0.002892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2213.461678 B = 8554.943920 C = 9679.275263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.011 3.989 3 Si 0.877 3.123 4 H -0.285 1.285 5 H -0.292 1.292 6 H -0.277 1.277 7 C -0.242 4.242 8 H 0.093 0.907 9 N -0.742 5.742 10 C 0.198 3.802 11 H 0.067 0.933 12 C 0.116 3.884 13 N -0.696 5.696 14 C 0.593 3.407 15 O -0.537 6.537 16 C -0.049 4.049 17 N -0.453 5.453 18 C 0.177 3.823 19 O -0.193 6.193 20 C 0.069 3.931 21 C -0.025 4.025 22 C -0.044 4.044 23 C -0.122 4.122 24 C -0.102 4.102 25 C -0.129 4.129 26 C -0.089 4.089 27 C -0.178 4.178 28 C -0.165 4.165 29 C -0.170 4.170 30 H 0.259 0.741 31 H 0.363 0.637 32 H 0.067 0.933 33 H 0.070 0.930 34 H 0.418 0.582 35 H 0.257 0.743 36 H 0.126 0.874 37 H 0.129 0.871 38 H 0.125 0.875 39 H 0.127 0.873 40 H 0.125 0.875 41 H 0.089 0.911 42 H 0.110 0.890 43 H 0.071 0.929 44 H 0.073 0.927 45 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.741 -1.473 10.611 22.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.185 4.185 3 Si 0.708 3.292 4 H -0.212 1.212 5 H -0.219 1.219 6 H -0.203 1.203 7 C -0.372 4.372 8 H 0.111 0.889 9 N -0.385 5.385 10 C 0.088 3.912 11 H 0.084 0.916 12 C -0.008 4.008 13 N -0.348 5.348 14 C 0.378 3.622 15 O -0.415 6.415 16 C -0.170 4.170 17 N -0.180 5.180 18 C -0.050 4.050 19 O -0.080 6.080 20 C 0.012 3.988 21 C -0.026 4.026 22 C -0.062 4.062 23 C -0.140 4.140 24 C -0.120 4.120 25 C -0.147 4.147 26 C -0.107 4.107 27 C -0.199 4.199 28 C -0.202 4.202 29 C -0.206 4.206 30 H 0.070 0.930 31 H 0.196 0.804 32 H 0.085 0.915 33 H 0.089 0.911 34 H 0.256 0.744 35 H 0.273 0.727 36 H 0.144 0.856 37 H 0.147 0.853 38 H 0.143 0.857 39 H 0.145 0.855 40 H 0.143 0.857 41 H 0.107 0.893 42 H 0.128 0.872 43 H 0.089 0.911 44 H 0.092 0.908 45 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 19.613 -1.843 10.091 22.134 hybrid contribution 0.409 1.488 0.429 1.602 sum 20.023 -0.355 10.520 22.621 Atomic orbital electron populations 1.69685 1.05061 1.25808 1.57141 1.24614 0.95092 0.96923 1.01857 0.86667 0.79324 0.85454 0.77759 1.21151 1.21852 1.20349 1.18999 0.80245 0.94592 1.43335 0.88886 1.42836 1.04178 1.01747 1.89781 1.19958 0.89559 0.89600 0.92128 0.91558 1.21704 0.98693 0.98164 0.82242 1.45861 1.09692 1.61649 1.17556 1.16637 0.84926 0.78379 0.82266 1.90826 1.25274 1.54235 1.71208 1.22109 0.87933 1.08497 0.98464 1.70761 1.27798 1.14401 1.05090 1.28099 0.80473 0.99273 0.97186 1.84469 1.22709 1.62865 1.37928 1.21784 0.93655 0.98707 0.84610 1.17442 0.85518 1.03253 0.96348 1.21096 0.95563 0.95379 0.94199 1.21052 0.92775 1.00426 0.99722 1.21315 0.99896 0.96976 0.93804 1.21003 0.94919 1.01026 0.97728 1.21198 0.93157 0.98032 0.98333 1.22996 0.98357 1.03632 0.94947 1.22842 1.03224 0.97184 0.96985 1.22898 0.96448 0.98644 1.02660 0.93041 0.80389 0.91456 0.91137 0.74380 0.72709 0.85566 0.85340 0.85727 0.85544 0.85748 0.89304 0.87223 0.91078 0.90849 0.87273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.07 13.97 55.49 0.78 -27.29 16 2 C 0.01 0.32 5.50 -17.43 -0.10 0.22 16 3 Si 0.88 21.58 27.73 -169.99 -4.71 16.87 16 4 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 5 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 6 H -0.28 -6.55 6.52 56.52 0.37 -6.18 16 7 C -0.24 -6.25 8.64 -15.06 -0.13 -6.38 16 8 H 0.09 2.60 7.14 -52.49 -0.37 2.22 16 9 N -0.74 -16.02 2.88 -53.43 -0.15 -16.17 16 10 C 0.20 3.56 2.86 -67.93 -0.19 3.37 16 11 H 0.07 1.25 8.08 -51.93 -0.42 0.83 16 12 C 0.12 1.90 5.22 -4.04 -0.02 1.88 16 13 N -0.70 -11.98 5.38 -61.47 -0.33 -12.31 16 14 C 0.59 10.22 7.75 -12.65 -0.10 10.12 16 15 O -0.54 -9.73 13.83 5.23 0.07 -9.66 16 16 C -0.05 -0.77 7.04 -82.35 -0.58 -1.35 16 17 N -0.45 -6.79 11.05 -11.04 -0.12 -6.91 16 18 C 0.18 1.93 13.16 51.96 0.68 2.62 16 19 O -0.19 -2.31 10.75 5.12 0.06 -2.26 16 20 C 0.07 0.96 6.84 -35.66 -0.24 0.72 16 21 C -0.03 -0.33 5.27 -105.01 -0.55 -0.88 16 22 C -0.04 -0.57 7.72 -39.15 -0.30 -0.87 16 23 C -0.12 -1.28 10.03 -39.64 -0.40 -1.68 16 24 C -0.10 -0.92 10.04 -39.48 -0.40 -1.31 16 25 C -0.13 -1.17 10.03 -39.64 -0.40 -1.57 16 26 C -0.09 -0.96 9.79 -39.16 -0.38 -1.34 16 27 C -0.18 -2.99 5.70 -90.62 -0.52 -3.51 16 28 C -0.17 -2.98 9.74 -26.70 -0.26 -3.24 16 29 C -0.17 -3.03 9.87 -26.70 -0.26 -3.30 16 30 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 31 H 0.36 8.04 5.66 -40.82 -0.23 7.81 16 32 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 34 H 0.42 7.68 7.88 -40.82 -0.32 7.36 16 35 H 0.26 1.39 8.06 -52.48 -0.42 0.97 16 36 H 0.13 1.73 7.61 -52.48 -0.40 1.33 16 37 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 38 H 0.12 0.79 8.06 -52.49 -0.42 0.36 16 39 H 0.13 0.81 8.06 -52.49 -0.42 0.38 16 40 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 41 H 0.09 1.31 8.11 -51.93 -0.42 0.89 16 42 H 0.11 2.31 6.68 -51.93 -0.35 1.96 16 43 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 44 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 45 H 0.11 2.28 6.22 -51.93 -0.32 1.96 16 LS Contribution 380.09 15.07 5.73 5.73 Total: -1.00 -32.20 380.09 -8.65 -40.85 By element: Atomic # 1 Polarization: 23.46 SS G_CDS: -5.81 Total: 17.65 kcal Atomic # 6 Polarization: -2.35 SS G_CDS: -4.15 Total: -6.50 kcal Atomic # 7 Polarization: -62.85 SS G_CDS: 0.17 Total: -62.68 kcal Atomic # 8 Polarization: -12.04 SS G_CDS: 0.13 Total: -11.91 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -4.71 Total: 16.87 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -32.20 -8.65 -40.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480022803.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.623 kcal (2) G-P(sol) polarization free energy of solvation -32.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.852 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds