Wall clock time and date at job start Sat Apr 11 2020 06:17:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86792 * 120.00059 * 2 1 4 4 H 1.48505 * 109.47338 * 270.00137 * 3 2 1 5 5 H 1.48505 * 109.47125 * 29.99932 * 3 2 1 6 6 H 1.48501 * 109.47102 * 150.00087 * 3 2 1 7 7 C 1.38815 * 119.99778 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99575 * 180.02562 * 7 2 1 9 9 N 1.36933 * 120.00205 * 359.97438 * 7 2 1 10 10 C 1.46500 * 120.00119 * 180.02562 * 9 7 2 11 11 H 1.08993 * 109.47452 * 35.00292 * 10 9 7 12 12 C 1.53006 * 109.46998 * 155.00213 * 10 9 7 13 13 N 1.46493 * 109.47189 * 304.99881 * 12 10 9 14 14 C 1.34775 * 120.00236 * 180.02562 * 13 12 10 15 15 O 1.21581 * 120.00002 * 359.97438 * 14 13 12 16 16 C 1.47532 * 120.00064 * 180.02562 * 14 13 12 17 17 C 1.36618 * 126.82667 * 179.70947 * 16 14 13 18 18 C 1.42195 * 103.79111 * 179.91043 * 17 16 14 19 19 C 1.48446 * 126.84056 * 180.12859 * 18 17 16 20 20 C 1.39321 * 120.12274 * 359.97320 * 19 18 17 21 21 C 1.38026 * 119.87974 * 179.69653 * 20 19 18 22 22 C 1.38316 * 120.11500 * 0.60553 * 21 20 19 23 23 C 1.38322 * 120.24645 * 359.66956 * 22 21 20 24 24 C 1.38029 * 120.11307 * 0.02695 * 23 22 21 25 25 N 1.30929 * 106.31440 * 0.35630 * 18 17 16 26 26 O 1.20870 * 111.80334 * 359.76769 * 25 18 17 27 27 C 1.52997 * 109.47007 * 275.00073 * 10 9 7 28 28 C 1.52998 * 117.49757 * 128.74870 * 27 10 9 29 29 C 1.53003 * 117.49978 * 60.08684 * 27 10 9 30 30 H 0.96997 * 120.00103 * 359.97438 * 1 2 3 31 31 H 0.97002 * 119.99851 * 0.02562 * 9 7 2 32 32 H 1.08997 * 109.47395 * 65.00358 * 12 10 9 33 33 H 1.09004 * 109.46579 * 184.99634 * 12 10 9 34 34 H 0.97005 * 119.99996 * 359.97438 * 13 12 10 35 35 H 1.08005 * 128.10297 * 0.02562 * 17 16 14 36 36 H 1.07999 * 120.05708 * 0.02562 * 20 19 18 37 37 H 1.08003 * 119.93827 * 180.31882 * 21 20 19 38 38 H 1.08012 * 119.87735 * 179.69776 * 22 21 20 39 39 H 1.07998 * 119.94137 * 180.02562 * 23 22 21 40 40 H 1.07993 * 120.05448 * 180.02562 * 24 23 22 41 41 H 1.09001 * 115.55272 * 274.41571 * 27 10 9 42 42 H 1.09004 * 117.50171 * 359.97438 * 28 27 10 43 43 H 1.09001 * 117.50114 * 145.02267 * 28 27 10 44 44 H 1.08997 * 117.49922 * 214.97679 * 29 27 10 45 45 H 1.08996 * 117.49497 * 359.97438 * 29 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6526 0.7000 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 1 2.9687 -3.5507 0.5889 12 6 1.1807 -4.7522 0.6091 13 7 0.7341 -4.3356 1.9406 14 6 -0.0549 -5.1477 2.6715 15 8 -0.3965 -6.2260 2.2256 16 6 -0.5051 -4.7279 4.0123 17 6 -1.3061 -5.4331 4.8652 18 6 -1.4233 -4.5842 5.9999 19 6 -2.1877 -4.8596 7.2423 20 6 -2.8889 -6.0554 7.3813 21 6 -3.5929 -6.3089 8.5412 22 6 -3.6131 -5.3729 9.5594 23 6 -2.9233 -4.1816 9.4244 24 6 -2.2110 -3.9206 8.2713 25 7 -0.7268 -3.5093 5.7286 26 8 -0.2131 -3.5710 4.6362 27 6 2.4219 -4.0356 -1.4375 28 6 3.8821 -4.3892 -1.7267 29 6 3.3028 -3.0621 -2.2233 30 1 -0.4850 0.8400 0.0004 31 1 0.3555 -2.3880 -0.0005 32 1 0.3132 -4.9201 -0.0291 33 1 1.7557 -5.6746 0.6907 34 1 1.0069 -3.4754 2.2966 35 1 -1.7457 -6.4080 4.7139 36 1 -2.8774 -6.7849 6.5850 37 1 -4.1326 -7.2378 8.6520 38 1 -4.1692 -5.5732 10.4634 39 1 -2.9421 -3.4544 10.2227 40 1 -1.6725 -2.9903 8.1671 41 1 1.6540 -4.5774 -1.9897 42 1 4.5836 -4.3516 -0.8933 43 1 4.0749 -5.1634 -2.4694 44 1 3.1147 -2.9639 -3.2924 45 1 3.6227 -2.1517 -1.7165 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001480030877.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:39 Heat of formation + Delta-G solvation = 89.659884 kcal Electronic energy + Delta-G solvation = -28090.667138 eV Core-core repulsion = 24077.642738 eV Total energy + Delta-G solvation = -4013.024400 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -45.01732 -39.52712 -39.38218 -37.60410 -34.98602 -34.52447 -33.47039 -32.29401 -31.26042 -30.94831 -30.49837 -28.18787 -24.81452 -24.34868 -23.55507 -22.85030 -22.11721 -21.81192 -21.64625 -20.22041 -19.65499 -18.63457 -17.78887 -17.26245 -16.86087 -16.30903 -15.93743 -15.54092 -15.27672 -14.97204 -14.86479 -14.46577 -14.14668 -13.93010 -13.77828 -13.60348 -13.50010 -13.31060 -13.18400 -13.00801 -12.22560 -11.90677 -11.67211 -11.42940 -11.26692 -11.21259 -11.03501 -10.90290 -10.87440 -10.77082 -10.28683 -10.13587 -9.95723 -9.84974 -9.58042 -9.34956 -9.28137 -9.00696 -8.87998 -8.80187 -7.08224 -5.83358 -3.13503 0.54263 0.86987 1.07464 2.21409 2.62763 3.08301 3.31745 3.39736 3.45195 3.47134 3.56969 3.72325 4.25721 4.38202 4.57458 4.63461 4.69614 4.76316 4.87001 4.98861 5.06574 5.14578 5.18056 5.31539 5.42680 5.46715 5.52732 5.57681 5.66885 5.70573 5.71109 5.82823 5.92359 6.00158 6.11831 6.12898 6.16904 6.18910 6.28707 6.45495 6.53502 6.59881 6.66968 6.74632 6.93666 7.54630 7.63556 7.99447 8.16721 8.33068 9.45525 9.98048 10.33838 11.38302 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.012921 B = 0.002481 C = 0.002143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2166.547414 B =11281.843104 C =13062.951939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.007 4.007 3 Si 0.903 3.097 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.240 4.240 8 H 0.071 0.929 9 N -0.717 5.717 10 C 0.192 3.808 11 H 0.058 0.942 12 C 0.117 3.883 13 N -0.692 5.692 14 C 0.600 3.400 15 O -0.525 6.525 16 C -0.067 4.067 17 C -0.150 4.150 18 C 0.045 3.955 19 C -0.018 4.018 20 C -0.094 4.094 21 C -0.120 4.120 22 C -0.111 4.111 23 C -0.120 4.120 24 C -0.092 4.092 25 N -0.335 5.335 26 O 0.134 5.866 27 C -0.160 4.160 28 C -0.196 4.196 29 C -0.156 4.156 30 H 0.256 0.744 31 H 0.386 0.614 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.418 0.582 35 H 0.184 0.816 36 H 0.129 0.871 37 H 0.128 0.872 38 H 0.125 0.875 39 H 0.127 0.873 40 H 0.130 0.870 41 H 0.091 0.909 42 H 0.087 0.913 43 H 0.081 0.919 44 H 0.080 0.920 45 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.341 -13.306 13.823 19.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.204 4.204 3 Si 0.734 3.266 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.370 4.370 8 H 0.089 0.911 9 N -0.358 5.358 10 C 0.081 3.919 11 H 0.076 0.924 12 C -0.007 4.007 13 N -0.342 5.342 14 C 0.382 3.618 15 O -0.403 6.403 16 C -0.133 4.133 17 C -0.172 4.172 18 C -0.111 4.111 19 C -0.019 4.019 20 C -0.114 4.114 21 C -0.138 4.138 22 C -0.130 4.130 23 C -0.138 4.138 24 C -0.111 4.111 25 N -0.032 5.032 26 O 0.057 5.943 27 C -0.181 4.181 28 C -0.234 4.234 29 C -0.193 4.193 30 H 0.066 0.934 31 H 0.220 0.780 32 H 0.089 0.911 33 H 0.091 0.909 34 H 0.256 0.744 35 H 0.201 0.799 36 H 0.147 0.853 37 H 0.146 0.854 38 H 0.143 0.857 39 H 0.145 0.855 40 H 0.148 0.852 41 H 0.109 0.891 42 H 0.105 0.895 43 H 0.099 0.901 44 H 0.098 0.902 45 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -3.198 -12.752 14.169 19.329 hybrid contribution -0.072 0.742 -0.313 0.809 sum -3.269 -12.010 13.856 18.626 Atomic orbital electron populations 1.69650 1.05068 1.25778 1.56974 1.24723 0.95432 0.97611 1.02652 0.86265 0.78735 0.84107 0.77500 1.21762 1.21815 1.20731 1.19128 0.90817 0.83747 1.43354 0.91078 1.42457 1.05827 0.99400 1.88109 1.20068 0.94368 0.86019 0.91418 0.92435 1.21766 0.99080 0.98031 0.81847 1.45924 1.48747 1.21630 1.17940 1.16504 0.79468 0.84516 0.81277 1.90842 1.57611 1.21926 1.69901 1.24271 1.03218 0.88337 0.97460 1.22796 1.00444 1.02445 0.91526 1.21951 1.00939 0.91609 0.96562 1.17682 0.97948 0.95618 0.90648 1.21163 0.96197 0.95816 0.98215 1.21087 0.99539 0.99744 0.93401 1.21297 0.98785 0.93923 0.98995 1.21129 0.97505 0.97544 0.97611 1.21275 0.98234 0.98905 0.92658 1.74026 1.10238 1.21103 0.97814 1.85030 1.54196 1.33908 1.21134 1.23018 0.92228 1.03202 0.99693 1.22972 0.97210 0.99841 1.03385 1.22789 1.03291 0.94079 0.99126 0.93432 0.78018 0.91082 0.90914 0.74382 0.79895 0.85272 0.85374 0.85718 0.85473 0.85195 0.89052 0.89495 0.90058 0.90189 0.87653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.55 13.06 55.49 0.72 -25.83 16 2 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 3 Si 0.90 21.45 29.55 -169.99 -5.02 16.43 16 4 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.24 -5.97 8.63 -15.06 -0.13 -6.10 16 8 H 0.07 1.73 6.91 -52.49 -0.36 1.37 16 9 N -0.72 -15.84 4.54 -53.43 -0.24 -16.09 16 10 C 0.19 3.37 2.70 -67.93 -0.18 3.18 16 11 H 0.06 1.02 7.84 -51.93 -0.41 0.61 16 12 C 0.12 1.83 5.22 -4.04 -0.02 1.81 16 13 N -0.69 -10.98 5.38 -61.35 -0.33 -11.31 16 14 C 0.60 9.56 7.82 -12.47 -0.10 9.46 16 15 O -0.53 -9.31 16.91 5.29 0.09 -9.22 16 16 C -0.07 -0.99 7.28 -36.38 -0.26 -1.25 16 17 C -0.15 -1.94 10.30 -38.65 -0.40 -2.34 16 18 C 0.04 0.60 7.05 -82.53 -0.58 0.02 16 19 C -0.02 -0.21 5.88 -104.89 -0.62 -0.83 16 20 C -0.09 -0.88 9.60 -39.26 -0.38 -1.26 16 21 C -0.12 -0.92 10.03 -39.63 -0.40 -1.32 16 22 C -0.11 -0.84 10.04 -39.52 -0.40 -1.23 16 23 C -0.12 -1.02 10.04 -39.63 -0.40 -1.42 16 24 C -0.09 -0.99 9.70 -39.26 -0.38 -1.37 16 25 N -0.33 -5.15 11.78 33.39 0.39 -4.76 16 26 O 0.13 2.10 11.02 15.55 0.17 2.27 16 27 C -0.16 -2.63 5.36 -90.62 -0.49 -3.12 16 28 C -0.20 -2.83 10.18 -26.69 -0.27 -3.10 16 29 C -0.16 -2.66 9.78 -26.69 -0.26 -2.92 16 30 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 31 H 0.39 9.37 7.80 -40.82 -0.32 9.05 16 32 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 34 H 0.42 6.92 7.96 -40.82 -0.32 6.59 16 35 H 0.18 1.90 7.57 -52.48 -0.40 1.51 16 36 H 0.13 0.98 7.22 -52.49 -0.38 0.60 16 37 H 0.13 0.67 8.06 -52.48 -0.42 0.25 16 38 H 0.12 0.63 8.06 -52.48 -0.42 0.21 16 39 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 40 H 0.13 1.43 7.89 -52.49 -0.41 1.01 16 41 H 0.09 1.46 8.11 -51.93 -0.42 1.04 16 42 H 0.09 1.20 8.05 -51.93 -0.42 0.79 16 43 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 44 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 45 H 0.11 2.02 6.23 -51.93 -0.32 1.70 16 LS Contribution 389.29 15.07 5.87 5.87 Total: -1.00 -29.67 389.29 -9.57 -39.24 By element: Atomic # 1 Polarization: 21.34 SS G_CDS: -5.86 Total: 15.48 kcal Atomic # 6 Polarization: -6.73 SS G_CDS: -5.36 Total: -12.08 kcal Atomic # 7 Polarization: -58.52 SS G_CDS: 0.55 Total: -57.98 kcal Atomic # 8 Polarization: -7.21 SS G_CDS: 0.26 Total: -6.95 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -29.67 -9.57 -39.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480030877.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.898 kcal (2) G-P(sol) polarization free energy of solvation -29.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.238 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds