Wall clock time and date at job start Sat Apr 11 2020 06:17:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86805 * 119.99893 * 2 1 4 4 H 1.48501 * 109.47115 * 240.00624 * 3 2 1 5 5 H 1.48501 * 109.46898 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47149 * 120.00233 * 3 2 1 7 7 C 1.38805 * 120.00315 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00497 * 179.97438 * 7 2 1 9 9 N 1.36941 * 119.99910 * 359.97438 * 7 2 1 10 10 C 1.46499 * 120.00177 * 180.02562 * 9 7 2 11 11 H 1.09003 * 109.47054 * 325.00517 * 10 9 7 12 12 C 1.53001 * 109.47392 * 205.00605 * 10 9 7 13 13 N 1.46493 * 109.47084 * 54.99694 * 12 10 9 14 14 C 1.34784 * 119.99864 * 180.02562 * 13 12 10 15 15 O 1.21583 * 119.99453 * 359.72930 * 14 13 12 16 16 C 1.47520 * 119.99967 * 179.72956 * 14 13 12 17 17 C 1.36623 * 126.82830 * 179.71287 * 16 14 13 18 18 C 1.42200 * 103.79081 * 179.90659 * 17 16 14 19 19 C 1.48453 * 126.84055 * 180.12748 * 18 17 16 20 20 C 1.39319 * 120.11963 * 359.97325 * 19 18 17 21 21 C 1.38024 * 119.87925 * 179.69756 * 20 19 18 22 22 C 1.38319 * 120.11417 * 0.60150 * 21 20 19 23 23 C 1.38316 * 120.24341 * 359.67604 * 22 21 20 24 24 C 1.38024 * 120.11828 * 0.02562 * 23 22 21 25 25 N 1.30925 * 106.31461 * 0.35402 * 18 17 16 26 26 O 1.20867 * 111.80709 * 359.77033 * 25 18 17 27 27 C 1.52997 * 109.47039 * 85.00004 * 10 9 7 28 28 C 1.53003 * 117.50025 * 8.75213 * 27 10 9 29 29 C 1.52997 * 117.50117 * 300.09063 * 27 10 9 30 30 H 0.96997 * 120.00360 * 359.97438 * 1 2 3 31 31 H 0.97000 * 120.00325 * 0.02562 * 9 7 2 32 32 H 1.09007 * 109.46593 * 294.99951 * 12 10 9 33 33 H 1.09006 * 109.47216 * 175.00409 * 12 10 9 34 34 H 0.97000 * 120.00740 * 359.72857 * 13 12 10 35 35 H 1.07994 * 128.10490 * 359.97438 * 17 16 14 36 36 H 1.08002 * 120.05879 * 0.02562 * 20 19 18 37 37 H 1.08001 * 119.94017 * 180.32023 * 21 20 19 38 38 H 1.08009 * 119.87614 * 179.69460 * 22 21 20 39 39 H 1.07999 * 119.94306 * 180.02562 * 23 22 21 40 40 H 1.08003 * 120.05739 * 180.02562 * 24 23 22 41 41 H 1.09006 * 115.54757 * 154.41612 * 27 10 9 42 42 H 1.09001 * 117.49296 * 359.97438 * 28 27 10 43 43 H 1.08991 * 117.50309 * 145.01577 * 28 27 10 44 44 H 1.08999 * 117.49717 * 214.97918 * 29 27 10 45 45 H 1.08999 * 117.49708 * 359.97438 * 29 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1038 1.6965 -1.2126 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6965 1.2124 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6567 -0.0005 11 1 2.9689 -3.5504 -0.5899 12 6 1.1810 -4.7521 -0.6103 13 7 0.7345 -4.3354 -1.9418 14 6 -0.0553 -5.1473 -2.6725 15 8 -0.3930 -6.2275 -2.2283 16 6 -0.5098 -4.7251 -4.0109 17 6 -1.3031 -5.4343 -4.8678 18 6 -1.4329 -4.5788 -5.9962 19 6 -2.2000 -4.8526 -7.2373 20 6 -2.8899 -6.0544 -7.3820 21 6 -3.6066 -6.3012 -8.5354 22 6 -3.6305 -5.3632 -9.5517 23 6 -2.9427 -4.1710 -9.4157 24 6 -2.2278 -3.9113 -8.2639 25 7 -0.7371 -3.5035 -5.7244 26 8 -0.2208 -3.5666 -4.6334 27 6 2.4220 -4.0355 1.4365 28 6 1.8133 -3.1986 2.5634 29 6 3.2994 -3.0601 2.2236 30 1 -0.4850 0.8400 0.0004 31 1 0.3556 -2.3881 -0.0005 32 1 0.3134 -4.9200 0.0279 33 1 1.7560 -5.6746 -0.6919 34 1 1.0036 -3.4734 -2.2960 35 1 -1.7321 -6.4146 -4.7219 36 1 -2.8682 -6.7892 -6.5908 37 1 -4.1460 -7.2303 -8.6465 38 1 -4.1886 -5.5625 -10.4548 39 1 -2.9650 -3.4419 -10.2121 40 1 -1.6914 -2.9798 -8.1586 41 1 2.5632 -5.1006 1.6205 42 1 1.1539 -2.3779 2.2809 43 1 1.5544 -3.7129 3.4889 44 1 4.0176 -3.4835 2.9257 45 1 3.6177 -2.1487 1.7175 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001480030878.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:41 Heat of formation + Delta-G solvation = 92.884841 kcal Electronic energy + Delta-G solvation = -28214.594293 eV Core-core repulsion = 24201.709738 eV Total energy + Delta-G solvation = -4012.884555 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -45.01656 -39.52734 -39.38331 -37.67088 -34.91307 -34.44212 -33.30613 -32.29898 -31.25666 -30.88799 -30.48136 -28.27936 -24.81786 -24.34774 -23.57701 -22.97794 -22.11973 -21.92312 -21.43143 -20.14115 -19.32886 -18.49363 -17.78884 -17.25653 -16.86418 -16.32172 -15.93463 -15.59310 -15.30524 -14.95053 -14.78102 -14.54362 -14.16909 -13.89439 -13.67846 -13.61250 -13.53438 -13.31012 -13.11752 -12.93250 -12.16146 -11.90118 -11.67238 -11.37592 -11.28745 -11.19388 -11.03478 -10.89322 -10.85945 -10.56616 -10.26389 -10.15553 -9.84907 -9.69638 -9.50502 -9.28202 -9.21504 -9.00641 -8.86864 -8.80090 -7.10047 -5.84921 -3.15785 0.54273 0.87038 1.07429 2.21419 2.63000 3.08495 3.32203 3.39897 3.44934 3.46065 3.56953 3.72337 4.26027 4.47772 4.61104 4.63422 4.69667 4.76283 4.87151 4.99002 5.06596 5.17923 5.29179 5.31592 5.44837 5.50251 5.52805 5.69952 5.70588 5.71088 5.80687 5.90451 5.98667 5.99019 6.11809 6.16865 6.18877 6.33233 6.36952 6.55691 6.59847 6.64370 6.75720 6.97239 7.25705 7.55081 7.63999 7.99604 8.17152 8.31800 9.44291 9.96381 10.32281 11.36303 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.013750 B = 0.002477 C = 0.002155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2035.935666 B =11303.259950 C =12987.847850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.005 4.005 3 Si 0.903 3.097 4 H -0.286 1.286 5 H -0.292 1.292 6 H -0.286 1.286 7 C -0.243 4.243 8 H 0.072 0.928 9 N -0.718 5.718 10 C 0.191 3.809 11 H 0.060 0.940 12 C 0.117 3.883 13 N -0.692 5.692 14 C 0.600 3.400 15 O -0.525 6.525 16 C -0.067 4.067 17 C -0.150 4.150 18 C 0.045 3.955 19 C -0.018 4.018 20 C -0.095 4.095 21 C -0.120 4.120 22 C -0.111 4.111 23 C -0.120 4.120 24 C -0.092 4.092 25 N -0.335 5.335 26 O 0.134 5.866 27 C -0.178 4.178 28 C -0.163 4.163 29 C -0.175 4.175 30 H 0.257 0.743 31 H 0.386 0.614 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.418 0.582 35 H 0.184 0.816 36 H 0.129 0.871 37 H 0.128 0.872 38 H 0.125 0.875 39 H 0.127 0.873 40 H 0.130 0.870 41 H 0.086 0.914 42 H 0.119 0.881 43 H 0.069 0.931 44 H 0.071 0.929 45 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.909 -12.917 -13.677 19.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.202 4.202 3 Si 0.734 3.266 4 H -0.212 1.212 5 H -0.218 1.218 6 H -0.213 1.213 7 C -0.373 4.373 8 H 0.089 0.911 9 N -0.359 5.359 10 C 0.080 3.920 11 H 0.078 0.922 12 C -0.007 4.007 13 N -0.342 5.342 14 C 0.382 3.618 15 O -0.403 6.403 16 C -0.133 4.133 17 C -0.172 4.172 18 C -0.111 4.111 19 C -0.019 4.019 20 C -0.114 4.114 21 C -0.138 4.138 22 C -0.130 4.130 23 C -0.138 4.138 24 C -0.111 4.111 25 N -0.032 5.032 26 O 0.057 5.943 27 C -0.200 4.200 28 C -0.200 4.200 29 C -0.212 4.212 30 H 0.067 0.933 31 H 0.221 0.779 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.256 0.744 35 H 0.201 0.799 36 H 0.147 0.853 37 H 0.146 0.854 38 H 0.143 0.857 39 H 0.145 0.855 40 H 0.148 0.852 41 H 0.105 0.895 42 H 0.137 0.863 43 H 0.087 0.913 44 H 0.090 0.910 45 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -3.762 -12.366 -14.010 19.062 hybrid contribution 0.016 0.688 0.247 0.731 sum -3.747 -11.678 -13.763 18.435 Atomic orbital electron populations 1.69636 1.05039 1.25949 1.56808 1.24708 0.95405 0.97579 1.02542 0.86348 0.78622 0.83809 0.77863 1.21227 1.21803 1.21265 1.19090 0.90866 0.83716 1.43676 0.91060 1.42473 1.05842 0.99475 1.88156 1.20006 0.94127 0.85956 0.91908 0.92240 1.21751 0.99268 0.97917 0.81763 1.45938 1.48747 1.21526 1.18017 1.16507 0.79440 0.84560 0.81277 1.90842 1.57756 1.21808 1.69894 1.24275 1.03357 0.88175 0.97467 1.22796 1.00563 1.02323 0.91546 1.21953 1.00930 0.91516 0.96666 1.17682 0.98019 0.95535 0.90654 1.21162 0.96215 0.95769 0.98249 1.21087 0.99414 0.99773 0.93494 1.21295 0.98822 0.93923 0.98961 1.21126 0.97501 0.97535 0.97625 1.21274 0.98203 0.98948 0.92651 1.74022 1.10070 1.21203 0.97891 1.85031 1.54114 1.33905 1.21218 1.23058 1.06129 0.95393 0.95416 1.22920 0.96744 1.03500 0.96825 1.22855 0.93507 1.01866 1.02979 0.93348 0.77900 0.90984 0.91106 0.74396 0.79905 0.85274 0.85374 0.85717 0.85475 0.85195 0.89544 0.86298 0.91265 0.91002 0.87879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.08 13.06 55.49 0.72 -25.35 16 2 C -0.01 -0.14 5.50 -17.43 -0.10 -0.24 16 3 Si 0.90 21.29 29.55 -169.99 -5.02 16.26 16 4 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 6 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 7 C -0.24 -5.93 8.15 -15.06 -0.12 -6.05 16 8 H 0.07 1.72 6.91 -52.49 -0.36 1.36 16 9 N -0.72 -15.45 3.07 -53.43 -0.16 -15.61 16 10 C 0.19 3.32 2.86 -67.93 -0.19 3.13 16 11 H 0.06 1.05 8.08 -51.93 -0.42 0.63 16 12 C 0.12 1.82 5.21 -4.04 -0.02 1.80 16 13 N -0.69 -10.92 5.39 -61.35 -0.33 -11.26 16 14 C 0.60 9.54 7.82 -12.47 -0.10 9.44 16 15 O -0.53 -9.31 16.91 5.29 0.09 -9.22 16 16 C -0.07 -0.99 7.28 -36.38 -0.26 -1.25 16 17 C -0.15 -1.94 10.30 -38.65 -0.40 -2.34 16 18 C 0.04 0.60 7.05 -82.52 -0.58 0.02 16 19 C -0.02 -0.21 5.88 -104.89 -0.62 -0.83 16 20 C -0.09 -0.88 9.60 -39.26 -0.38 -1.26 16 21 C -0.12 -0.93 10.03 -39.63 -0.40 -1.32 16 22 C -0.11 -0.84 10.04 -39.52 -0.40 -1.24 16 23 C -0.12 -1.02 10.03 -39.63 -0.40 -1.42 16 24 C -0.09 -0.99 9.70 -39.26 -0.38 -1.37 16 25 N -0.33 -5.15 11.78 33.39 0.39 -4.76 16 26 O 0.13 2.10 11.02 15.53 0.17 2.27 16 27 C -0.18 -2.95 5.70 -90.62 -0.52 -3.47 16 28 C -0.16 -2.94 9.74 -26.69 -0.26 -3.20 16 29 C -0.18 -3.02 9.87 -26.69 -0.26 -3.29 16 30 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 31 H 0.39 9.18 7.80 -40.82 -0.32 8.86 16 32 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 33 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.42 6.88 7.95 -40.82 -0.32 6.55 16 35 H 0.18 1.91 7.57 -52.49 -0.40 1.51 16 36 H 0.13 0.98 7.22 -52.49 -0.38 0.60 16 37 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 38 H 0.12 0.63 8.06 -52.48 -0.42 0.21 16 39 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 40 H 0.13 1.43 7.89 -52.48 -0.41 1.02 16 41 H 0.09 1.26 8.11 -51.93 -0.42 0.84 16 42 H 0.12 2.59 6.68 -51.93 -0.35 2.25 16 43 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 44 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 45 H 0.10 2.00 6.22 -51.93 -0.32 1.68 16 LS Contribution 386.38 15.07 5.82 5.82 Total: -1.00 -28.83 386.38 -9.50 -38.33 By element: Atomic # 1 Polarization: 22.20 SS G_CDS: -5.80 Total: 16.39 kcal Atomic # 6 Polarization: -7.49 SS G_CDS: -5.38 Total: -12.88 kcal Atomic # 7 Polarization: -57.60 SS G_CDS: 0.62 Total: -56.98 kcal Atomic # 8 Polarization: -7.22 SS G_CDS: 0.26 Total: -6.96 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -28.83 -9.50 -38.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480030878.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.213 kcal (2) G-P(sol) polarization free energy of solvation -28.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.328 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds