Wall clock time and date at job start Sat Apr 11 2020 06:17:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86805 * 119.99893 * 2 1 4 4 H 1.48501 * 109.47115 * 240.00624 * 3 2 1 5 5 H 1.48501 * 109.46898 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47149 * 120.00233 * 3 2 1 7 7 C 1.38805 * 120.00315 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00497 * 179.97438 * 7 2 1 9 9 N 1.36941 * 119.99910 * 359.97438 * 7 2 1 10 10 C 1.46499 * 120.00177 * 180.02562 * 9 7 2 11 11 H 1.09003 * 109.47054 * 325.00517 * 10 9 7 12 12 C 1.53001 * 109.47392 * 205.00605 * 10 9 7 13 13 N 1.46493 * 109.47084 * 54.99694 * 12 10 9 14 14 C 1.34784 * 119.99864 * 180.02562 * 13 12 10 15 15 O 1.21583 * 119.99453 * 359.72930 * 14 13 12 16 16 C 1.47520 * 119.99967 * 179.72956 * 14 13 12 17 17 C 1.36623 * 126.82830 * 179.71287 * 16 14 13 18 18 C 1.42200 * 103.79081 * 179.90659 * 17 16 14 19 19 C 1.48453 * 126.84055 * 180.12748 * 18 17 16 20 20 C 1.39319 * 120.11963 * 359.97325 * 19 18 17 21 21 C 1.38024 * 119.87925 * 179.69756 * 20 19 18 22 22 C 1.38319 * 120.11417 * 0.60150 * 21 20 19 23 23 C 1.38316 * 120.24341 * 359.67604 * 22 21 20 24 24 C 1.38024 * 120.11828 * 0.02562 * 23 22 21 25 25 N 1.30925 * 106.31461 * 0.35402 * 18 17 16 26 26 O 1.20867 * 111.80709 * 359.77033 * 25 18 17 27 27 C 1.52997 * 109.47039 * 85.00004 * 10 9 7 28 28 C 1.53003 * 117.50025 * 8.75213 * 27 10 9 29 29 C 1.52997 * 117.50117 * 300.09063 * 27 10 9 30 30 H 0.96997 * 120.00360 * 359.97438 * 1 2 3 31 31 H 0.97000 * 120.00325 * 0.02562 * 9 7 2 32 32 H 1.09007 * 109.46593 * 294.99951 * 12 10 9 33 33 H 1.09006 * 109.47216 * 175.00409 * 12 10 9 34 34 H 0.97000 * 120.00740 * 359.72857 * 13 12 10 35 35 H 1.07994 * 128.10490 * 359.97438 * 17 16 14 36 36 H 1.08002 * 120.05879 * 0.02562 * 20 19 18 37 37 H 1.08001 * 119.94017 * 180.32023 * 21 20 19 38 38 H 1.08009 * 119.87614 * 179.69460 * 22 21 20 39 39 H 1.07999 * 119.94306 * 180.02562 * 23 22 21 40 40 H 1.08003 * 120.05739 * 180.02562 * 24 23 22 41 41 H 1.09006 * 115.54757 * 154.41612 * 27 10 9 42 42 H 1.09001 * 117.49296 * 359.97438 * 28 27 10 43 43 H 1.08991 * 117.50309 * 145.01577 * 28 27 10 44 44 H 1.08999 * 117.49717 * 214.97918 * 29 27 10 45 45 H 1.08999 * 117.49708 * 359.97438 * 29 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1038 1.6965 -1.2126 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6965 1.2124 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6567 -0.0005 11 1 2.9689 -3.5504 -0.5899 12 6 1.1810 -4.7521 -0.6103 13 7 0.7345 -4.3354 -1.9418 14 6 -0.0553 -5.1473 -2.6725 15 8 -0.3930 -6.2275 -2.2283 16 6 -0.5098 -4.7251 -4.0109 17 6 -1.3031 -5.4343 -4.8678 18 6 -1.4329 -4.5788 -5.9962 19 6 -2.2000 -4.8526 -7.2373 20 6 -2.8899 -6.0544 -7.3820 21 6 -3.6066 -6.3012 -8.5354 22 6 -3.6305 -5.3632 -9.5517 23 6 -2.9427 -4.1710 -9.4157 24 6 -2.2278 -3.9113 -8.2639 25 7 -0.7371 -3.5035 -5.7244 26 8 -0.2208 -3.5666 -4.6334 27 6 2.4220 -4.0355 1.4365 28 6 1.8133 -3.1986 2.5634 29 6 3.2994 -3.0601 2.2236 30 1 -0.4850 0.8400 0.0004 31 1 0.3556 -2.3881 -0.0005 32 1 0.3134 -4.9200 0.0279 33 1 1.7560 -5.6746 -0.6919 34 1 1.0036 -3.4734 -2.2960 35 1 -1.7321 -6.4146 -4.7219 36 1 -2.8682 -6.7892 -6.5908 37 1 -4.1460 -7.2303 -8.6465 38 1 -4.1886 -5.5625 -10.4548 39 1 -2.9650 -3.4419 -10.2121 40 1 -1.6914 -2.9798 -8.1586 41 1 2.5632 -5.1006 1.6205 42 1 1.1539 -2.3779 2.2809 43 1 1.5544 -3.7129 3.4889 44 1 4.0176 -3.4835 2.9257 45 1 3.6177 -2.1487 1.7175 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001480030878.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:40 Heat of formation + Delta-G solvation = 77.117622 kcal Electronic energy + Delta-G solvation = -28215.278011 eV Core-core repulsion = 24201.709738 eV Total energy + Delta-G solvation = -4013.568273 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -46.11594 -40.83368 -40.07731 -39.13974 -36.13901 -35.55532 -35.06705 -33.45734 -32.50692 -31.90220 -31.36121 -29.85728 -26.17767 -25.31723 -25.15928 -24.09772 -23.16408 -22.93689 -22.75785 -21.30274 -20.59933 -19.77229 -19.07468 -18.91791 -17.60999 -17.39018 -17.25229 -16.82917 -16.40117 -16.31489 -16.08856 -15.77268 -15.41065 -15.28338 -14.89760 -14.66529 -14.49994 -14.37196 -14.25477 -14.05642 -13.72508 -12.96119 -12.93531 -12.82169 -12.62907 -12.60295 -12.31988 -12.14366 -11.97370 -11.97201 -11.94809 -11.62395 -11.52029 -11.00485 -10.98798 -10.83374 -10.59461 -10.16120 -9.94792 -9.60266 -8.97970 -7.87460 -5.14503 -0.42835 -0.10964 0.41109 1.29041 1.47467 1.50430 1.50667 1.55671 1.85282 2.12918 2.59299 2.78287 2.86411 3.15943 3.23412 3.48144 3.75691 3.86906 3.88243 3.99852 4.03243 4.05228 4.07247 4.28834 4.30938 4.37226 4.48552 4.52122 4.59967 4.60338 4.67209 4.69961 4.92091 4.93603 5.00610 5.07107 5.18762 5.21627 5.36490 5.46146 5.46820 5.49323 5.52831 5.69107 5.72573 5.96694 6.25904 6.32729 6.81817 6.93843 7.41573 8.12715 8.36818 9.34676 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.013750 B = 0.002477 C = 0.002155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2035.935666 B =11303.259950 C =12987.847850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.964 5.964 2 C -0.067 4.067 3 Si 0.954 3.046 4 H -0.281 1.281 5 H -0.305 1.305 6 H -0.282 1.282 7 C -0.216 4.216 8 H 0.077 0.923 9 N -0.721 5.721 10 C 0.189 3.811 11 H 0.063 0.937 12 C 0.125 3.875 13 N -0.693 5.693 14 C 0.606 3.394 15 O -0.543 6.543 16 C -0.083 4.083 17 C -0.136 4.136 18 C 0.052 3.948 19 C -0.050 4.050 20 C -0.097 4.097 21 C -0.119 4.119 22 C -0.104 4.104 23 C -0.125 4.125 24 C -0.111 4.111 25 N -0.360 5.360 26 O 0.112 5.888 27 C -0.165 4.165 28 C -0.174 4.174 29 C -0.173 4.173 30 H 0.246 0.754 31 H 0.374 0.626 32 H 0.064 0.936 33 H 0.096 0.904 34 H 0.415 0.585 35 H 0.210 0.790 36 H 0.145 0.855 37 H 0.159 0.841 38 H 0.156 0.844 39 H 0.147 0.853 40 H 0.115 0.885 41 H 0.121 0.879 42 H 0.076 0.924 43 H 0.091 0.909 44 H 0.101 0.899 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.856 -15.600 -14.796 21.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.615 5.615 2 C -0.259 4.259 3 Si 0.785 3.215 4 H -0.208 1.208 5 H -0.232 1.232 6 H -0.209 1.209 7 C -0.348 4.348 8 H 0.095 0.905 9 N -0.362 5.362 10 C 0.080 3.920 11 H 0.081 0.919 12 C 0.001 3.999 13 N -0.342 5.342 14 C 0.389 3.611 15 O -0.422 6.422 16 C -0.149 4.149 17 C -0.158 4.158 18 C -0.104 4.104 19 C -0.051 4.051 20 C -0.117 4.117 21 C -0.136 4.136 22 C -0.123 4.123 23 C -0.142 4.142 24 C -0.130 4.130 25 N -0.061 5.061 26 O 0.039 5.961 27 C -0.186 4.186 28 C -0.211 4.211 29 C -0.210 4.210 30 H 0.055 0.945 31 H 0.207 0.793 32 H 0.083 0.917 33 H 0.114 0.886 34 H 0.251 0.749 35 H 0.227 0.773 36 H 0.163 0.837 37 H 0.177 0.823 38 H 0.174 0.826 39 H 0.164 0.836 40 H 0.133 0.867 41 H 0.139 0.861 42 H 0.095 0.905 43 H 0.109 0.891 44 H 0.119 0.881 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -3.643 -15.078 -15.103 21.650 hybrid contribution -0.026 1.403 0.486 1.485 sum -3.670 -13.675 -14.617 20.351 Atomic orbital electron populations 1.69777 1.06273 1.25526 1.59908 1.25291 0.95958 1.00204 1.04485 0.85499 0.77291 0.80761 0.77923 1.20759 1.23212 1.20878 1.19359 0.91083 0.84548 1.39812 0.90546 1.42540 1.05321 1.00343 1.87951 1.20188 0.94106 0.84721 0.92995 0.91912 1.21698 0.98857 0.97935 0.81365 1.45941 1.48839 1.21338 1.18129 1.16520 0.78935 0.84166 0.81477 1.90822 1.58470 1.22436 1.70498 1.24211 1.04551 0.88658 0.97480 1.23155 0.99241 1.02876 0.90536 1.22398 0.99845 0.90715 0.97428 1.17865 0.99721 0.97189 0.90302 1.21433 0.95711 0.95052 0.99466 1.21500 0.98619 1.00896 0.92605 1.21730 0.97674 0.92949 0.99904 1.21403 0.96979 0.98672 0.97196 1.21335 0.99255 0.98647 0.93803 1.74008 1.11495 1.22544 0.98089 1.85002 1.54975 1.34484 1.21603 1.23046 1.04784 0.96970 0.93784 1.22777 0.96698 1.03133 0.98531 1.22848 0.93459 1.01242 1.03446 0.94515 0.79316 0.91719 0.88643 0.74864 0.77311 0.83708 0.82326 0.82601 0.83556 0.86671 0.86150 0.90528 0.89055 0.88065 0.90458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -56.34 13.06 21.65 0.28 -56.06 16 2 C -0.07 -3.60 5.50 84.86 0.47 -3.13 16 3 Si 0.95 44.84 29.55 68.60 2.03 46.87 16 4 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 5 H -0.31 -14.90 7.11 99.48 0.71 -14.19 16 6 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 7 C -0.22 -10.69 8.15 84.03 0.69 -10.00 16 8 H 0.08 3.67 6.91 -2.91 -0.02 3.65 16 9 N -0.72 -31.46 3.07 -322.94 -0.99 -32.45 16 10 C 0.19 6.38 2.86 44.99 0.13 6.51 16 11 H 0.06 2.12 8.08 -2.39 -0.02 2.10 16 12 C 0.12 3.74 5.21 86.38 0.45 4.19 16 13 N -0.69 -21.88 5.39 -466.28 -2.51 -24.39 16 14 C 0.61 19.21 7.82 86.69 0.68 19.89 16 15 O -0.54 -18.79 16.91 -3.98 -0.07 -18.86 16 16 C -0.08 -2.50 7.28 24.34 0.18 -2.33 16 17 C -0.14 -3.47 10.30 22.88 0.24 -3.23 16 18 C 0.05 1.41 7.05 42.99 0.30 1.72 16 19 C -0.05 -1.14 5.88 -20.04 -0.12 -1.25 16 20 C -0.10 -1.62 9.60 22.48 0.22 -1.40 16 21 C -0.12 -1.44 10.03 22.24 0.22 -1.22 16 22 C -0.10 -1.23 10.04 22.31 0.22 -1.01 16 23 C -0.12 -1.93 10.03 22.24 0.22 -1.71 16 24 C -0.11 -2.41 9.70 22.48 0.22 -2.19 16 25 N -0.36 -11.61 11.78 -48.92 -0.58 -12.18 16 26 O 0.11 3.68 11.02 65.75 0.72 4.41 16 27 C -0.16 -5.07 5.70 -10.79 -0.06 -5.14 16 28 C -0.17 -6.11 9.74 30.62 0.30 -5.82 16 29 C -0.17 -5.64 9.87 30.62 0.30 -5.34 16 30 H 0.25 14.37 8.31 -92.71 -0.77 13.60 16 31 H 0.37 18.32 7.80 -92.71 -0.72 17.59 16 32 H 0.06 2.07 8.14 -2.38 -0.02 2.05 16 33 H 0.10 2.44 8.14 -2.38 -0.02 2.42 16 34 H 0.41 13.95 7.95 -92.71 -0.74 13.21 16 35 H 0.21 3.98 7.57 -2.91 -0.02 3.96 16 36 H 0.15 1.83 7.22 -2.91 -0.02 1.81 16 37 H 0.16 0.95 8.06 -2.91 -0.02 0.93 16 38 H 0.16 0.87 8.06 -2.91 -0.02 0.85 16 39 H 0.15 1.59 8.06 -2.91 -0.02 1.57 16 40 H 0.12 2.72 7.89 -2.91 -0.02 2.69 16 41 H 0.12 2.99 8.11 -2.38 -0.02 2.97 16 42 H 0.08 3.41 6.68 -2.39 -0.02 3.39 16 43 H 0.09 2.78 8.14 -2.39 -0.02 2.76 16 44 H 0.10 2.72 8.14 -2.39 -0.02 2.70 16 45 H 0.08 2.93 6.22 -2.39 -0.01 2.92 16 Total: -1.00 -64.58 386.38 3.12 -61.46 By element: Atomic # 1 Polarization: 43.06 SS G_CDS: -0.41 Total: 42.65 kcal Atomic # 6 Polarization: -16.10 SS G_CDS: 4.65 Total: -11.45 kcal Atomic # 7 Polarization: -121.28 SS G_CDS: -3.80 Total: -125.08 kcal Atomic # 8 Polarization: -15.11 SS G_CDS: 0.66 Total: -14.45 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.87 kcal Total: -64.58 3.12 -61.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480030878.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.578 kcal (2) G-P(sol) polarization free energy of solvation -64.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.461 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds