Wall clock time and date at job start Sat Apr 11 2020 06:17:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86797 * 119.99976 * 2 1 4 4 H 1.48493 * 109.47221 * 269.99600 * 3 2 1 5 5 H 1.48507 * 109.47092 * 29.99875 * 3 2 1 6 6 H 1.48500 * 109.47163 * 149.99502 * 3 2 1 7 7 C 1.38815 * 119.99912 * 179.97438 * 2 1 3 8 8 H 1.08011 * 119.99484 * 180.02562 * 7 2 1 9 9 N 1.36938 * 120.00378 * 0.02562 * 7 2 1 10 10 C 1.46502 * 120.00011 * 179.97438 * 9 7 2 11 11 H 1.08994 * 109.46938 * 35.00533 * 10 9 7 12 12 C 1.52999 * 109.46798 * 155.00115 * 10 9 7 13 13 N 1.46505 * 109.47189 * 305.00563 * 12 10 9 14 14 C 1.34777 * 119.99722 * 180.02562 * 13 12 10 15 15 O 1.21493 * 120.00329 * 359.97438 * 14 13 12 16 16 C 1.48351 * 119.99570 * 179.72005 * 14 13 12 17 17 C 1.41911 * 126.83995 * 179.97438 * 16 14 13 18 18 C 1.36713 * 103.81541 * 179.91326 * 17 16 14 19 19 C 1.47855 * 126.82211 * 180.08906 * 18 17 16 20 20 C 1.39563 * 120.13935 * 0.02562 * 19 18 17 21 21 C 1.37969 * 119.85337 * 179.74263 * 20 19 18 22 22 C 1.38356 * 120.14010 * 0.51261 * 21 20 19 23 23 C 1.38352 * 120.29157 * 359.75908 * 22 21 20 24 24 C 1.37958 * 120.14421 * 359.97438 * 23 22 21 25 25 O 1.34465 * 106.36342 * 0.34765 * 18 17 16 26 26 N 1.20876 * 111.73615 * 359.75883 * 25 18 17 27 27 C 1.52996 * 109.47215 * 275.00462 * 10 9 7 28 28 C 1.52995 * 117.50217 * 128.75135 * 27 10 9 29 29 C 1.52996 * 117.50395 * 60.08456 * 27 10 9 30 30 H 0.96994 * 120.00320 * 0.02562 * 1 2 3 31 31 H 0.97004 * 119.99560 * 0.02562 * 9 7 2 32 32 H 1.08995 * 109.47276 * 185.00341 * 12 10 9 33 33 H 1.09001 * 109.47054 * 65.00059 * 12 10 9 34 34 H 0.97000 * 119.99795 * 359.97438 * 13 12 10 35 35 H 1.08000 * 128.09933 * 0.03311 * 17 16 14 36 36 H 1.08006 * 120.07534 * 359.96863 * 20 19 18 37 37 H 1.07994 * 119.92997 * 180.27484 * 21 20 19 38 38 H 1.08001 * 119.85383 * 179.74678 * 22 21 20 39 39 H 1.07996 * 119.92918 * 179.97438 * 23 22 21 40 40 H 1.07999 * 120.07310 * 180.02562 * 24 23 22 41 41 H 1.09008 * 115.54469 * 274.41953 * 27 10 9 42 42 H 1.09003 * 117.49397 * 359.97438 * 28 27 10 43 43 H 1.08996 * 117.50225 * 145.01658 * 28 27 10 44 44 H 1.08993 * 117.50447 * 214.98086 * 29 27 10 45 45 H 1.09002 * 117.49239 * 359.97438 * 29 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4000 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 3.0904 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0582 -3.6568 0.0005 11 1 2.9688 -3.5506 0.5900 12 6 1.1810 -4.7522 0.6101 13 7 0.7342 -4.3354 1.9417 14 6 -0.0548 -5.1477 2.6726 15 8 -0.3960 -6.2253 2.2270 16 6 -0.5021 -4.7284 4.0234 17 6 -1.3292 -5.4633 4.9122 18 6 -1.4383 -4.6492 6.0051 19 6 -2.1947 -4.9269 7.2448 20 6 -2.8945 -6.1262 7.3850 21 6 -3.5940 -6.3814 8.5465 22 6 -3.6112 -5.4470 9.5667 23 6 -2.9241 -4.2538 9.4318 24 6 -2.2163 -3.9885 8.2777 25 8 -0.7260 -3.5433 5.7264 26 7 -0.2169 -3.6028 4.6316 27 6 2.4222 -4.0356 -1.4364 28 6 3.8824 -4.3892 -1.7256 29 6 3.3030 -3.0622 -2.2221 30 1 -0.4850 0.8400 -0.0004 31 1 0.3556 -2.3881 -0.0002 32 1 1.7559 -5.6746 0.6920 33 1 0.3135 -4.9201 -0.0281 34 1 1.0069 -3.4753 2.2976 35 1 -1.7680 -6.4385 4.7614 36 1 -2.8857 -6.8544 6.5874 37 1 -4.1323 -7.3110 8.6581 38 1 -4.1636 -5.6499 10.4723 39 1 -2.9419 -3.5283 10.2316 40 1 -1.6801 -3.0569 8.1737 41 1 1.6542 -4.5774 -1.9886 42 1 4.5838 -4.3516 -0.8921 43 1 4.0752 -5.1633 -2.4682 44 1 3.1150 -2.9639 -3.2912 45 1 3.6228 -2.1516 -1.7154 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001480035753.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:43 Heat of formation + Delta-G solvation = 90.110980 kcal Electronic energy + Delta-G solvation = -28061.501918 eV Core-core repulsion = 24048.497079 eV Total energy + Delta-G solvation = -4013.004839 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -45.08013 -39.44992 -39.38671 -37.56415 -34.76682 -34.17531 -33.57062 -33.21604 -31.35686 -30.93851 -29.77111 -28.21086 -25.16357 -24.00312 -23.61617 -22.90895 -22.15261 -21.85165 -21.66920 -20.14171 -19.47650 -18.54121 -17.83659 -17.35102 -16.71038 -16.64290 -15.77135 -15.45574 -15.23922 -15.19590 -14.84936 -14.45433 -14.16538 -13.95225 -13.78568 -13.60311 -13.49845 -13.31554 -13.17081 -12.94810 -12.19235 -11.92604 -11.57348 -11.42762 -11.37293 -11.19254 -10.88751 -10.86110 -10.74704 -10.57640 -10.46419 -10.17012 -10.11486 -9.93697 -9.55601 -9.36481 -9.32634 -8.98648 -8.78174 -8.65518 -7.05812 -5.81260 -3.11288 0.32005 1.00080 1.30314 1.90099 2.69491 3.16302 3.32181 3.40416 3.45810 3.45948 3.47510 3.97742 4.26834 4.40147 4.52780 4.58266 4.59002 4.70869 4.86825 4.96625 5.02795 5.18175 5.19143 5.28124 5.44490 5.48772 5.50188 5.59614 5.62297 5.70121 5.72443 5.86186 5.96312 6.03020 6.03394 6.05520 6.09859 6.14824 6.33994 6.50706 6.50780 6.55728 6.72478 6.78842 6.95515 7.64808 7.67692 8.00616 8.31721 8.35354 9.47289 10.00388 10.36290 11.40548 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.012974 B = 0.002464 C = 0.002132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2157.605352 B =11360.517691 C =13132.389234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C -0.008 4.008 3 Si 0.904 3.096 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.239 4.239 8 H 0.071 0.929 9 N -0.717 5.717 10 C 0.192 3.808 11 H 0.056 0.944 12 C 0.118 3.882 13 N -0.693 5.693 14 C 0.595 3.405 15 O -0.536 6.536 16 C -0.020 4.020 17 C -0.164 4.164 18 C -0.001 4.001 19 C -0.018 4.018 20 C -0.090 4.090 21 C -0.118 4.118 22 C -0.109 4.109 23 C -0.118 4.118 24 C -0.094 4.094 25 O 0.133 5.867 26 N -0.315 5.315 27 C -0.159 4.159 28 C -0.196 4.196 29 C -0.156 4.156 30 H 0.255 0.745 31 H 0.385 0.615 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.418 0.582 35 H 0.182 0.818 36 H 0.131 0.869 37 H 0.130 0.870 38 H 0.126 0.874 39 H 0.129 0.871 40 H 0.134 0.866 41 H 0.091 0.909 42 H 0.086 0.914 43 H 0.081 0.919 44 H 0.080 0.920 45 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.512 -13.113 16.511 21.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.205 4.205 3 Si 0.735 3.265 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.370 4.370 8 H 0.089 0.911 9 N -0.358 5.358 10 C 0.082 3.918 11 H 0.074 0.926 12 C -0.007 4.007 13 N -0.344 5.344 14 C 0.378 3.622 15 O -0.413 6.413 16 C -0.179 4.179 17 C -0.186 4.186 18 C -0.063 4.063 19 C -0.020 4.020 20 C -0.109 4.109 21 C -0.136 4.136 22 C -0.127 4.127 23 C -0.136 4.136 24 C -0.112 4.112 25 O 0.054 5.946 26 N -0.012 5.012 27 C -0.181 4.181 28 C -0.234 4.234 29 C -0.193 4.193 30 H 0.065 0.935 31 H 0.219 0.781 32 H 0.089 0.911 33 H 0.087 0.913 34 H 0.255 0.745 35 H 0.199 0.801 36 H 0.149 0.851 37 H 0.148 0.852 38 H 0.144 0.856 39 H 0.147 0.853 40 H 0.152 0.848 41 H 0.109 0.891 42 H 0.105 0.895 43 H 0.100 0.900 44 H 0.098 0.902 45 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -3.863 -12.652 15.743 20.563 hybrid contribution -0.176 0.746 -0.086 0.771 sum -4.039 -11.906 15.657 20.080 Atomic orbital electron populations 1.69656 1.05081 1.25727 1.57069 1.24729 0.95439 0.97617 1.02709 0.86252 0.78713 0.84081 0.77496 1.21743 1.21804 1.20751 1.19138 0.90801 0.83782 1.43242 0.91111 1.42450 1.05811 0.99408 1.88083 1.20059 0.94334 0.86062 0.91383 0.92579 1.21727 0.98938 0.97907 0.82079 1.45879 1.48996 1.21748 1.17806 1.16830 0.79079 0.84335 0.82004 1.90762 1.57420 1.22141 1.70966 1.23449 1.02876 0.92590 0.98950 1.22554 1.01914 1.02688 0.91473 1.22452 0.99130 0.87939 0.96806 1.17597 0.98349 0.95974 0.90032 1.21158 0.95951 0.95462 0.98334 1.21084 0.99434 0.99840 0.93243 1.21348 0.98517 0.93851 0.98974 1.21130 0.97343 0.97495 0.97634 1.21356 0.98315 0.98894 0.92638 1.84900 1.47501 1.35954 1.26264 1.74271 1.14451 1.19217 0.93291 1.23015 0.92225 1.03190 0.99683 1.22969 0.97218 0.99839 1.03370 1.22786 1.03301 0.94067 0.99116 0.93462 0.78056 0.91122 0.91275 0.74470 0.80051 0.85087 0.85216 0.85615 0.85279 0.84791 0.89054 0.89524 0.90033 0.90165 0.87673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.31 13.06 55.49 0.72 -26.58 16 2 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 3 Si 0.90 21.93 29.55 -169.99 -5.02 16.91 16 4 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 5 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.24 -6.19 8.63 -15.06 -0.13 -6.32 16 8 H 0.07 1.79 6.91 -52.48 -0.36 1.43 16 9 N -0.72 -16.74 4.54 -53.42 -0.24 -16.98 16 10 C 0.19 3.62 2.70 -67.93 -0.18 3.44 16 11 H 0.06 1.08 7.84 -51.93 -0.41 0.67 16 12 C 0.12 2.03 5.22 -4.04 -0.02 2.01 16 13 N -0.69 -12.48 5.39 -61.09 -0.33 -12.81 16 14 C 0.59 10.68 7.85 -12.10 -0.09 10.59 16 15 O -0.54 -10.45 16.95 5.37 0.09 -10.36 16 16 C -0.02 -0.33 7.18 -82.62 -0.59 -0.92 16 17 C -0.16 -2.14 10.34 -38.73 -0.40 -2.54 16 18 C 0.00 -0.01 7.15 -36.20 -0.26 -0.27 16 19 C -0.02 -0.18 5.87 -104.97 -0.62 -0.79 16 20 C -0.09 -0.72 9.58 -39.19 -0.38 -1.10 16 21 C -0.12 -0.77 10.03 -39.64 -0.40 -1.17 16 22 C -0.11 -0.67 10.04 -39.50 -0.40 -1.07 16 23 C -0.12 -0.81 10.03 -39.64 -0.40 -1.21 16 24 C -0.09 -0.80 9.73 -39.19 -0.38 -1.18 16 25 O 0.13 1.88 11.01 16.04 0.18 2.06 16 26 N -0.31 -5.21 11.81 33.35 0.39 -4.81 16 27 C -0.16 -2.78 5.36 -90.63 -0.49 -3.26 16 28 C -0.20 -2.97 10.18 -26.69 -0.27 -3.25 16 29 C -0.16 -2.76 9.78 -26.69 -0.26 -3.03 16 30 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 31 H 0.39 9.89 7.80 -40.82 -0.32 9.58 16 32 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 34 H 0.42 8.00 7.89 -40.82 -0.32 7.67 16 35 H 0.18 1.93 7.46 -52.49 -0.39 1.53 16 36 H 0.13 0.86 7.15 -52.48 -0.38 0.49 16 37 H 0.13 0.55 8.06 -52.49 -0.42 0.13 16 38 H 0.13 0.49 8.06 -52.49 -0.42 0.07 16 39 H 0.13 0.61 8.06 -52.49 -0.42 0.19 16 40 H 0.13 1.05 7.96 -52.49 -0.42 0.63 16 41 H 0.09 1.55 8.11 -51.92 -0.42 1.12 16 42 H 0.09 1.27 8.05 -51.93 -0.42 0.85 16 43 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 44 H 0.08 1.35 8.14 -51.93 -0.42 0.92 16 45 H 0.10 2.09 6.23 -51.93 -0.32 1.77 16 LS Contribution 389.26 15.07 5.87 5.87 Total: -1.00 -31.01 389.26 -9.56 -40.56 By element: Atomic # 1 Polarization: 22.38 SS G_CDS: -5.85 Total: 16.52 kcal Atomic # 6 Polarization: -5.02 SS G_CDS: -5.36 Total: -10.38 kcal Atomic # 7 Polarization: -61.73 SS G_CDS: 0.55 Total: -61.18 kcal Atomic # 8 Polarization: -8.57 SS G_CDS: 0.27 Total: -8.30 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -31.01 -9.56 -40.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480035753.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.674 kcal (2) G-P(sol) polarization free energy of solvation -31.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.563 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds