Wall clock time and date at job start Sat Apr 11 2020 06:17:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86797 * 119.99841 * 2 1 4 4 H 1.48499 * 109.47036 * 269.99562 * 3 2 1 5 5 H 1.48495 * 109.47425 * 29.99717 * 3 2 1 6 6 H 1.48506 * 109.47229 * 149.99736 * 3 2 1 7 7 C 1.38805 * 119.99805 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00497 * 0.02562 * 7 2 1 9 9 N 1.36941 * 119.99910 * 179.97438 * 7 2 1 10 10 C 1.46499 * 120.00177 * 180.02562 * 9 7 2 11 11 H 1.09003 * 109.47054 * 325.00517 * 10 9 7 12 12 C 1.53001 * 109.47392 * 205.00605 * 10 9 7 13 13 N 1.46493 * 109.47084 * 54.99694 * 12 10 9 14 14 C 1.34784 * 119.99864 * 180.02562 * 13 12 10 15 15 O 1.21494 * 119.99763 * 359.72900 * 14 13 12 16 16 C 1.48343 * 119.99875 * 179.72911 * 14 13 12 17 17 C 1.41924 * 126.83889 * 179.71588 * 16 14 13 18 18 C 1.36711 * 103.81118 * 179.85641 * 17 16 14 19 19 C 1.47855 * 126.81592 * 180.12818 * 18 17 16 20 20 C 1.39562 * 120.14331 * 0.02562 * 19 18 17 21 21 C 1.37967 * 119.85144 * 179.77061 * 20 19 18 22 22 C 1.38349 * 120.14543 * 0.50562 * 21 20 19 23 23 C 1.38364 * 120.29094 * 359.74841 * 22 21 20 24 24 C 1.37966 * 120.14014 * 359.97438 * 23 22 21 25 25 O 1.34461 * 106.36838 * 0.39383 * 18 17 16 26 26 N 1.20882 * 111.73741 * 359.72985 * 25 18 17 27 27 C 1.52997 * 109.47039 * 85.00004 * 10 9 7 28 28 C 1.53003 * 117.50025 * 8.75213 * 27 10 9 29 29 C 1.52997 * 117.50117 * 300.09063 * 27 10 9 30 30 H 0.97003 * 119.99947 * 0.02562 * 1 2 3 31 31 H 0.97000 * 120.00325 * 0.02562 * 9 7 2 32 32 H 1.09007 * 109.46593 * 294.99951 * 12 10 9 33 33 H 1.09006 * 109.47216 * 175.00409 * 12 10 9 34 34 H 0.97000 * 120.00740 * 359.72857 * 13 12 10 35 35 H 1.07994 * 128.09334 * 359.97438 * 17 16 14 36 36 H 1.08002 * 120.07397 * 0.02562 * 20 19 18 37 37 H 1.08001 * 119.92133 * 180.25637 * 21 20 19 38 38 H 1.07996 * 119.85600 * 179.72438 * 22 21 20 39 39 H 1.07998 * 119.92901 * 180.02562 * 23 22 21 40 40 H 1.08001 * 120.06566 * 180.02562 * 24 23 22 41 41 H 1.09006 * 115.54757 * 154.41612 * 27 10 9 42 42 H 1.09001 * 117.49296 * 359.97438 * 28 27 10 43 43 H 1.08991 * 117.50309 * 145.01577 * 28 27 10 44 44 H 1.08999 * 117.49717 * 214.97918 * 29 27 10 45 45 H 1.08999 * 117.49708 * 359.97438 * 29 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6527 0.6999 6 1 3.5478 1.4402 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 1.4703 -2.1375 0.0005 9 7 3.3796 -1.2021 0.0000 10 6 4.1122 -2.4708 0.0000 11 1 3.5650 -3.2063 0.5898 12 6 5.4996 -2.2588 0.6092 13 7 5.3625 -1.6634 1.9406 14 6 6.4607 -1.3852 2.6708 15 8 7.5641 -1.6327 2.2267 16 6 6.3221 -0.7768 4.0166 17 6 7.3723 -0.4311 4.9064 18 6 6.7230 0.0895 5.9910 19 6 7.3425 0.6154 7.2263 20 6 8.7307 0.6123 7.3702 21 6 9.3026 1.1089 8.5235 22 6 8.5027 1.5994 9.5401 23 6 7.1256 1.6005 9.4059 24 6 6.5413 1.1120 8.2554 25 8 5.4090 0.0230 5.7139 26 7 5.2052 -0.4564 4.6231 27 6 4.2577 -2.9757 -1.4369 28 6 3.8368 -2.0303 -2.5639 29 6 2.9740 -3.2480 -2.2235 30 1 -0.4850 0.8401 -0.0004 31 1 3.8647 -0.3621 -0.0004 32 1 6.0785 -1.5915 -0.0294 33 1 6.0110 -3.2179 0.6908 34 1 4.4815 -1.4654 2.2951 35 1 8.4357 -0.5497 4.7601 36 1 9.3560 0.2259 6.5790 37 1 10.3769 1.1109 8.6343 38 1 8.9552 1.9829 10.4427 39 1 6.5068 1.9852 10.2030 40 1 5.4663 1.1138 8.1518 41 1 5.1094 -3.6306 -1.6211 42 1 3.4558 -1.0489 -2.2815 43 1 4.4113 -2.0635 -3.4896 44 1 2.9812 -4.0819 -2.9255 45 1 2.0257 -3.0680 -1.7171 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001480035754.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:46 Heat of formation + Delta-G solvation = 97.336702 kcal Electronic energy + Delta-G solvation = -28299.336387 eV Core-core repulsion = 24286.644878 eV Total energy + Delta-G solvation = -4012.691508 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -45.17894 -39.56595 -39.47494 -37.78116 -34.74559 -34.27262 -33.54477 -33.22789 -31.41623 -31.16016 -29.86451 -28.75906 -25.31308 -24.07995 -23.52200 -22.88597 -22.27543 -22.06255 -21.48437 -20.14049 -19.27415 -18.65034 -17.93593 -17.66391 -16.83500 -16.71429 -15.86865 -15.57871 -15.43882 -15.25163 -14.89417 -14.53274 -14.33455 -14.07345 -13.82129 -13.62017 -13.51517 -13.37215 -13.17146 -12.82899 -12.53873 -11.99932 -11.67435 -11.64158 -11.46852 -11.24032 -10.99032 -10.83269 -10.65727 -10.61255 -10.56932 -10.26433 -10.23658 -9.58498 -9.57223 -9.41908 -9.25795 -9.04399 -8.92296 -8.72982 -7.39644 -5.84332 -3.21618 0.24750 0.94637 1.19064 1.82091 2.60230 3.03827 3.19207 3.32708 3.36358 3.39954 3.42070 3.86963 4.18313 4.46543 4.49883 4.52412 4.52680 4.64915 4.77634 4.89553 4.96244 5.09575 5.16050 5.20593 5.26304 5.40820 5.43461 5.56633 5.63222 5.64883 5.71414 5.80119 5.89836 5.92001 5.97763 5.99250 6.04675 6.22059 6.35595 6.45167 6.46989 6.56718 6.68716 6.98759 7.12042 7.53724 7.89050 7.90615 8.18231 8.33816 9.10651 9.83068 10.01389 11.33265 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.014816 B = 0.002558 C = 0.002281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1889.332328 B =10944.697383 C =12271.538301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.012 3.988 3 Si 0.877 3.123 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.278 1.278 7 C -0.245 4.245 8 H 0.094 0.906 9 N -0.743 5.743 10 C 0.197 3.803 11 H 0.067 0.933 12 C 0.115 3.885 13 N -0.698 5.698 14 C 0.594 3.406 15 O -0.533 6.533 16 C -0.022 4.022 17 C -0.165 4.165 18 C 0.002 3.998 19 C -0.020 4.020 20 C -0.090 4.090 21 C -0.118 4.118 22 C -0.108 4.108 23 C -0.118 4.118 24 C -0.093 4.093 25 O 0.133 5.867 26 N -0.317 5.317 27 C -0.178 4.178 28 C -0.165 4.165 29 C -0.169 4.169 30 H 0.260 0.740 31 H 0.363 0.637 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.417 0.583 35 H 0.183 0.817 36 H 0.131 0.869 37 H 0.130 0.870 38 H 0.126 0.874 39 H 0.130 0.870 40 H 0.134 0.866 41 H 0.090 0.910 42 H 0.110 0.890 43 H 0.071 0.929 44 H 0.074 0.926 45 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.003 0.261 16.388 24.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.184 4.184 3 Si 0.708 3.292 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.374 4.374 8 H 0.112 0.888 9 N -0.386 5.386 10 C 0.087 3.913 11 H 0.085 0.915 12 C -0.009 4.009 13 N -0.349 5.349 14 C 0.378 3.622 15 O -0.410 6.410 16 C -0.180 4.180 17 C -0.187 4.187 18 C -0.061 4.061 19 C -0.021 4.021 20 C -0.109 4.109 21 C -0.136 4.136 22 C -0.126 4.126 23 C -0.136 4.136 24 C -0.112 4.112 25 O 0.055 5.945 26 N -0.015 5.015 27 C -0.200 4.200 28 C -0.202 4.202 29 C -0.206 4.206 30 H 0.070 0.930 31 H 0.196 0.804 32 H 0.088 0.912 33 H 0.092 0.908 34 H 0.255 0.745 35 H 0.200 0.800 36 H 0.149 0.851 37 H 0.148 0.852 38 H 0.144 0.856 39 H 0.148 0.852 40 H 0.152 0.848 41 H 0.108 0.892 42 H 0.128 0.872 43 H 0.090 0.910 44 H 0.092 0.908 45 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 17.208 -0.131 15.610 23.234 hybrid contribution 0.896 1.353 0.012 1.623 sum 18.104 1.221 15.622 23.944 Atomic orbital electron populations 1.69685 1.05052 1.25881 1.56903 1.24624 0.95112 0.96953 1.01743 0.86674 0.79275 0.85463 0.77815 1.21059 1.21743 1.20447 1.18989 0.80181 0.94614 1.43637 0.88846 1.42854 1.04232 1.01717 1.89829 1.19970 0.89404 0.89662 0.92272 0.91468 1.21771 0.98984 0.98292 0.81878 1.45928 1.09459 1.61524 1.18015 1.16844 0.85003 0.78410 0.81989 1.90770 1.25591 1.53800 1.70794 1.23451 0.89685 1.05933 0.98971 1.22558 1.01653 1.02862 0.91617 1.22468 0.83369 1.03289 0.96943 1.17594 0.92949 1.01474 0.90114 1.21154 0.92670 0.98660 0.98380 1.21088 1.00308 0.98864 0.93339 1.21360 0.93874 0.98410 0.98939 1.21144 0.95103 0.99682 0.97651 1.21363 1.00454 0.96699 0.92639 1.84900 1.24750 1.58393 1.26506 1.74268 1.23088 1.10650 0.93473 1.22988 0.98447 1.03708 0.94856 1.22851 1.03208 0.97204 0.96971 1.22905 0.96416 0.98662 1.02638 0.92974 0.80381 0.91202 0.90834 0.74545 0.79996 0.85095 0.85180 0.85562 0.85223 0.84772 0.89234 0.87204 0.91012 0.90789 0.87245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.09 13.97 55.49 0.78 -27.32 16 2 C 0.01 0.34 5.50 -17.43 -0.10 0.24 16 3 Si 0.88 21.72 27.73 -169.99 -4.71 17.00 16 4 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 5 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 6 H -0.28 -6.62 6.52 56.52 0.37 -6.25 16 7 C -0.24 -6.31 8.64 -15.06 -0.13 -6.44 16 8 H 0.09 2.60 7.14 -52.49 -0.37 2.23 16 9 N -0.74 -16.02 2.88 -53.43 -0.15 -16.18 16 10 C 0.20 3.53 2.86 -67.93 -0.19 3.33 16 11 H 0.07 1.24 8.08 -51.93 -0.42 0.83 16 12 C 0.11 1.85 5.22 -4.04 -0.02 1.83 16 13 N -0.70 -11.86 5.39 -61.09 -0.33 -12.19 16 14 C 0.59 10.15 7.85 -12.10 -0.09 10.05 16 15 O -0.53 -9.91 16.95 5.37 0.09 -9.82 16 16 C -0.02 -0.34 7.18 -82.62 -0.59 -0.93 16 17 C -0.16 -2.04 10.34 -38.72 -0.40 -2.44 16 18 C 0.00 0.02 7.15 -36.20 -0.26 -0.24 16 19 C -0.02 -0.19 5.87 -104.97 -0.62 -0.80 16 20 C -0.09 -0.68 9.58 -39.19 -0.38 -1.06 16 21 C -0.12 -0.72 10.03 -39.64 -0.40 -1.12 16 22 C -0.11 -0.63 10.04 -39.49 -0.40 -1.02 16 23 C -0.12 -0.76 10.03 -39.63 -0.40 -1.16 16 24 C -0.09 -0.76 9.73 -39.19 -0.38 -1.14 16 25 O 0.13 1.81 11.01 16.05 0.18 1.99 16 26 N -0.32 -5.03 11.81 33.35 0.39 -4.64 16 27 C -0.18 -2.99 5.70 -90.62 -0.52 -3.50 16 28 C -0.17 -2.98 9.74 -26.69 -0.26 -3.24 16 29 C -0.17 -3.02 9.87 -26.69 -0.26 -3.28 16 30 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 31 H 0.36 8.05 5.66 -40.82 -0.23 7.82 16 32 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.42 7.50 7.89 -40.82 -0.32 7.18 16 35 H 0.18 1.82 7.46 -52.49 -0.39 1.42 16 36 H 0.13 0.80 7.15 -52.49 -0.38 0.43 16 37 H 0.13 0.51 8.06 -52.49 -0.42 0.08 16 38 H 0.13 0.45 8.06 -52.49 -0.42 0.03 16 39 H 0.13 0.57 8.06 -52.49 -0.42 0.15 16 40 H 0.13 1.00 7.96 -52.49 -0.42 0.58 16 41 H 0.09 1.30 8.11 -51.93 -0.42 0.88 16 42 H 0.11 2.31 6.68 -51.93 -0.35 1.97 16 43 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 44 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 45 H 0.11 2.28 6.22 -51.93 -0.32 1.96 16 LS Contribution 383.22 15.07 5.78 5.78 Total: -1.00 -31.43 383.22 -9.13 -40.56 By element: Atomic # 1 Polarization: 21.49 SS G_CDS: -5.75 Total: 15.74 kcal Atomic # 6 Polarization: -5.53 SS G_CDS: -5.39 Total: -10.93 kcal Atomic # 7 Polarization: -61.01 SS G_CDS: 0.69 Total: -60.32 kcal Atomic # 8 Polarization: -8.09 SS G_CDS: 0.27 Total: -7.83 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.71 Total: 17.00 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -31.43 -9.13 -40.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480035754.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.896 kcal (2) G-P(sol) polarization free energy of solvation -31.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.559 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds