Wall clock time and date at job start Sat Apr 11 2020 06:17:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86797 * 119.99841 * 2 1 4 4 H 1.48499 * 109.47036 * 269.99562 * 3 2 1 5 5 H 1.48495 * 109.47425 * 29.99717 * 3 2 1 6 6 H 1.48506 * 109.47229 * 149.99736 * 3 2 1 7 7 C 1.38805 * 119.99805 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00497 * 0.02562 * 7 2 1 9 9 N 1.36941 * 119.99910 * 179.97438 * 7 2 1 10 10 C 1.46499 * 120.00177 * 180.02562 * 9 7 2 11 11 H 1.09003 * 109.47054 * 325.00517 * 10 9 7 12 12 C 1.53001 * 109.47392 * 205.00605 * 10 9 7 13 13 N 1.46493 * 109.47084 * 54.99694 * 12 10 9 14 14 C 1.34784 * 119.99864 * 180.02562 * 13 12 10 15 15 O 1.21494 * 119.99763 * 359.72900 * 14 13 12 16 16 C 1.48343 * 119.99875 * 179.72911 * 14 13 12 17 17 C 1.41924 * 126.83889 * 179.71588 * 16 14 13 18 18 C 1.36711 * 103.81118 * 179.85641 * 17 16 14 19 19 C 1.47855 * 126.81592 * 180.12818 * 18 17 16 20 20 C 1.39562 * 120.14331 * 0.02562 * 19 18 17 21 21 C 1.37967 * 119.85144 * 179.77061 * 20 19 18 22 22 C 1.38349 * 120.14543 * 0.50562 * 21 20 19 23 23 C 1.38364 * 120.29094 * 359.74841 * 22 21 20 24 24 C 1.37966 * 120.14014 * 359.97438 * 23 22 21 25 25 O 1.34461 * 106.36838 * 0.39383 * 18 17 16 26 26 N 1.20882 * 111.73741 * 359.72985 * 25 18 17 27 27 C 1.52997 * 109.47039 * 85.00004 * 10 9 7 28 28 C 1.53003 * 117.50025 * 8.75213 * 27 10 9 29 29 C 1.52997 * 117.50117 * 300.09063 * 27 10 9 30 30 H 0.97003 * 119.99947 * 0.02562 * 1 2 3 31 31 H 0.97000 * 120.00325 * 0.02562 * 9 7 2 32 32 H 1.09007 * 109.46593 * 294.99951 * 12 10 9 33 33 H 1.09006 * 109.47216 * 175.00409 * 12 10 9 34 34 H 0.97000 * 120.00740 * 359.72857 * 13 12 10 35 35 H 1.07994 * 128.09334 * 359.97438 * 17 16 14 36 36 H 1.08002 * 120.07397 * 0.02562 * 20 19 18 37 37 H 1.08001 * 119.92133 * 180.25637 * 21 20 19 38 38 H 1.07996 * 119.85600 * 179.72438 * 22 21 20 39 39 H 1.07998 * 119.92901 * 180.02562 * 23 22 21 40 40 H 1.08001 * 120.06566 * 180.02562 * 24 23 22 41 41 H 1.09006 * 115.54757 * 154.41612 * 27 10 9 42 42 H 1.09001 * 117.49296 * 359.97438 * 28 27 10 43 43 H 1.08991 * 117.50309 * 145.01577 * 28 27 10 44 44 H 1.08999 * 117.49717 * 214.97918 * 29 27 10 45 45 H 1.08999 * 117.49708 * 359.97438 * 29 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6527 0.6999 6 1 3.5478 1.4402 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 1.4703 -2.1375 0.0005 9 7 3.3796 -1.2021 0.0000 10 6 4.1122 -2.4708 0.0000 11 1 3.5650 -3.2063 0.5898 12 6 5.4996 -2.2588 0.6092 13 7 5.3625 -1.6634 1.9406 14 6 6.4607 -1.3852 2.6708 15 8 7.5641 -1.6327 2.2267 16 6 6.3221 -0.7768 4.0166 17 6 7.3723 -0.4311 4.9064 18 6 6.7230 0.0895 5.9910 19 6 7.3425 0.6154 7.2263 20 6 8.7307 0.6123 7.3702 21 6 9.3026 1.1089 8.5235 22 6 8.5027 1.5994 9.5401 23 6 7.1256 1.6005 9.4059 24 6 6.5413 1.1120 8.2554 25 8 5.4090 0.0230 5.7139 26 7 5.2052 -0.4564 4.6231 27 6 4.2577 -2.9757 -1.4369 28 6 3.8368 -2.0303 -2.5639 29 6 2.9740 -3.2480 -2.2235 30 1 -0.4850 0.8401 -0.0004 31 1 3.8647 -0.3621 -0.0004 32 1 6.0785 -1.5915 -0.0294 33 1 6.0110 -3.2179 0.6908 34 1 4.4815 -1.4654 2.2951 35 1 8.4357 -0.5497 4.7601 36 1 9.3560 0.2259 6.5790 37 1 10.3769 1.1109 8.6343 38 1 8.9552 1.9829 10.4427 39 1 6.5068 1.9852 10.2030 40 1 5.4663 1.1138 8.1518 41 1 5.1094 -3.6306 -1.6211 42 1 3.4558 -1.0489 -2.2815 43 1 4.4113 -2.0635 -3.4896 44 1 2.9812 -4.0819 -2.9255 45 1 2.0257 -3.0680 -1.7171 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001480035754.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:45 Heat of formation + Delta-G solvation = 78.737241 kcal Electronic energy + Delta-G solvation = -28300.142920 eV Core-core repulsion = 24286.644878 eV Total energy + Delta-G solvation = -4013.498041 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -46.24555 -40.91114 -40.01881 -39.29579 -36.12682 -35.31850 -35.18480 -34.30591 -33.02460 -31.91557 -30.67872 -30.31512 -26.60610 -25.11084 -24.86470 -24.17129 -23.31530 -22.93862 -22.85176 -21.40525 -20.71678 -19.82096 -19.29146 -19.02407 -18.05240 -17.45124 -17.06687 -16.98683 -16.51831 -16.29556 -16.16853 -15.90862 -15.70589 -15.16803 -14.92351 -14.69209 -14.58440 -14.36560 -14.30265 -14.26125 -13.94719 -13.24065 -13.01277 -12.91710 -12.69171 -12.57190 -12.28379 -12.19268 -12.09007 -11.97848 -11.71076 -11.68899 -11.60527 -11.42011 -11.12165 -10.92411 -10.68802 -10.27746 -9.92692 -9.43307 -9.37269 -8.01644 -5.34200 -0.50100 0.07833 0.44281 1.05098 1.33336 1.33872 1.40004 1.65946 1.84441 1.93733 2.44699 2.75499 2.85819 3.05281 3.25429 3.32660 3.56360 3.70049 3.78953 3.95093 3.99101 4.05437 4.10868 4.21185 4.26729 4.31062 4.41524 4.49788 4.50617 4.57752 4.62436 4.69772 4.78616 4.93709 4.96203 5.07739 5.10222 5.12039 5.28115 5.43006 5.47663 5.48372 5.56180 5.60702 5.83067 5.97230 6.19084 6.21690 6.76059 6.90604 7.06556 7.80603 7.98440 9.19632 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.014816 B = 0.002558 C = 0.002281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1889.332328 B =10944.697383 C =12271.538301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.980 5.980 2 C -0.053 4.053 3 Si 0.937 3.063 4 H -0.282 1.282 5 H -0.303 1.303 6 H -0.263 1.263 7 C -0.205 4.205 8 H 0.067 0.933 9 N -0.742 5.742 10 C 0.194 3.806 11 H 0.061 0.939 12 C 0.123 3.877 13 N -0.702 5.702 14 C 0.596 3.404 15 O -0.550 6.550 16 C -0.042 4.042 17 C -0.170 4.170 18 C 0.019 3.981 19 C -0.048 4.048 20 C -0.093 4.093 21 C -0.120 4.120 22 C -0.101 4.101 23 C -0.123 4.123 24 C -0.105 4.105 25 O 0.131 5.869 26 N -0.347 5.347 27 C -0.162 4.162 28 C -0.171 4.171 29 C -0.176 4.176 30 H 0.255 0.745 31 H 0.363 0.637 32 H 0.071 0.929 33 H 0.096 0.904 34 H 0.411 0.589 35 H 0.204 0.796 36 H 0.143 0.857 37 H 0.156 0.844 38 H 0.154 0.846 39 H 0.150 0.850 40 H 0.132 0.868 41 H 0.127 0.873 42 H 0.075 0.925 43 H 0.100 0.900 44 H 0.103 0.897 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.639 0.293 17.636 27.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.631 5.631 2 C -0.245 4.245 3 Si 0.767 3.233 4 H -0.209 1.209 5 H -0.230 1.230 6 H -0.189 1.189 7 C -0.336 4.336 8 H 0.085 0.915 9 N -0.385 5.385 10 C 0.086 3.914 11 H 0.079 0.921 12 C -0.001 4.001 13 N -0.353 5.353 14 C 0.380 3.620 15 O -0.427 6.427 16 C -0.199 4.199 17 C -0.192 4.192 18 C -0.043 4.043 19 C -0.049 4.049 20 C -0.112 4.112 21 C -0.138 4.138 22 C -0.119 4.119 23 C -0.141 4.141 24 C -0.124 4.124 25 O 0.052 5.948 26 N -0.046 5.046 27 C -0.183 4.183 28 C -0.208 4.208 29 C -0.213 4.213 30 H 0.064 0.936 31 H 0.196 0.804 32 H 0.090 0.910 33 H 0.115 0.885 34 H 0.248 0.752 35 H 0.221 0.779 36 H 0.161 0.839 37 H 0.174 0.826 38 H 0.172 0.828 39 H 0.168 0.832 40 H 0.150 0.850 41 H 0.145 0.855 42 H 0.094 0.906 43 H 0.118 0.882 44 H 0.121 0.879 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 20.901 -0.132 16.853 26.850 hybrid contribution -0.159 1.276 -0.224 1.306 sum 20.742 1.144 16.629 26.609 Atomic orbital electron populations 1.69839 1.06785 1.26157 1.60286 1.25226 0.95702 1.00101 1.03482 0.85684 0.78420 0.81548 0.77652 1.20898 1.22980 1.18862 1.18884 0.81919 0.93150 1.39648 0.91514 1.42804 1.02712 1.03315 1.89670 1.20145 0.90062 0.87742 0.93488 0.92093 1.21740 0.97464 0.99449 0.81427 1.45984 1.09244 1.61688 1.18337 1.16985 0.84589 0.77973 0.82404 1.90746 1.25954 1.54647 1.71392 1.23455 0.90781 1.06825 0.98835 1.22787 1.02184 1.03185 0.91084 1.22922 0.82293 1.01654 0.97470 1.17728 0.93900 1.03615 0.89683 1.21403 0.91959 0.98404 0.99402 1.21452 1.01772 0.97946 0.92640 1.21776 0.93582 0.96862 0.99701 1.21437 0.95966 0.99245 0.97460 1.21511 1.00565 0.97076 0.93237 1.84852 1.26055 1.58076 1.25804 1.74256 1.23828 1.12080 0.94426 1.22972 0.98910 1.03304 0.93120 1.22809 1.03768 0.95512 0.98719 1.22832 0.95140 0.99801 1.03548 0.93618 0.80407 0.91033 0.88546 0.75239 0.77855 0.83924 0.82598 0.82809 0.83234 0.84990 0.85478 0.90629 0.88177 0.87907 0.91155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -61.75 13.97 21.65 0.30 -61.45 16 2 C -0.05 -3.06 5.50 84.86 0.47 -2.60 16 3 Si 0.94 46.05 27.73 68.60 1.90 47.95 16 4 H -0.28 -13.68 7.11 99.48 0.71 -12.97 16 5 H -0.30 -15.36 7.11 99.48 0.71 -14.65 16 6 H -0.26 -12.09 6.52 99.48 0.65 -11.44 16 7 C -0.21 -10.87 8.64 84.03 0.73 -10.14 16 8 H 0.07 3.89 7.14 -2.91 -0.02 3.87 16 9 N -0.74 -31.97 2.88 -322.94 -0.93 -32.90 16 10 C 0.19 6.73 2.86 44.99 0.13 6.86 16 11 H 0.06 2.23 8.08 -2.39 -0.02 2.21 16 12 C 0.12 3.73 5.22 86.38 0.45 4.18 16 13 N -0.70 -23.39 5.39 -465.48 -2.51 -25.90 16 14 C 0.60 19.97 7.85 86.93 0.68 20.66 16 15 O -0.55 -19.73 16.95 -3.70 -0.06 -19.80 16 16 C -0.04 -1.29 7.18 42.86 0.31 -0.98 16 17 C -0.17 -4.09 10.34 22.83 0.24 -3.86 16 18 C 0.02 0.44 7.15 24.46 0.17 0.62 16 19 C -0.05 -0.84 5.87 -20.09 -0.12 -0.96 16 20 C -0.09 -1.21 9.58 22.53 0.22 -0.99 16 21 C -0.12 -1.09 10.03 22.23 0.22 -0.87 16 22 C -0.10 -0.84 10.04 22.33 0.22 -0.62 16 23 C -0.12 -1.32 10.03 22.24 0.22 -1.09 16 24 C -0.11 -1.61 9.73 22.52 0.22 -1.39 16 25 O 0.13 3.61 11.01 67.63 0.74 4.35 16 26 N -0.35 -11.20 11.81 -49.00 -0.58 -11.78 16 27 C -0.16 -5.04 5.70 -10.79 -0.06 -5.11 16 28 C -0.17 -5.88 9.74 30.62 0.30 -5.58 16 29 C -0.18 -6.09 9.87 30.62 0.30 -5.79 16 30 H 0.25 15.55 8.31 -92.71 -0.77 14.78 16 31 H 0.36 15.87 5.66 -92.71 -0.52 15.35 16 32 H 0.07 2.20 8.14 -2.38 -0.02 2.18 16 33 H 0.10 2.55 8.14 -2.38 -0.02 2.53 16 34 H 0.41 14.83 7.89 -92.71 -0.73 14.10 16 35 H 0.20 3.75 7.46 -2.91 -0.02 3.73 16 36 H 0.14 1.41 7.15 -2.91 -0.02 1.39 16 37 H 0.16 0.58 8.06 -2.91 -0.02 0.56 16 38 H 0.15 0.42 8.06 -2.91 -0.02 0.40 16 39 H 0.15 0.92 8.06 -2.91 -0.02 0.90 16 40 H 0.13 1.95 7.96 -2.91 -0.02 1.93 16 41 H 0.13 3.12 8.11 -2.38 -0.02 3.10 16 42 H 0.08 3.16 6.68 -2.39 -0.02 3.14 16 43 H 0.10 2.88 8.14 -2.39 -0.02 2.86 16 44 H 0.10 2.95 8.14 -2.39 -0.02 2.94 16 45 H 0.07 3.01 6.22 -2.39 -0.01 2.99 16 Total: -1.00 -70.59 383.22 3.30 -67.29 By element: Atomic # 1 Polarization: 40.14 SS G_CDS: -0.27 Total: 39.88 kcal Atomic # 6 Polarization: -12.35 SS G_CDS: 4.70 Total: -7.66 kcal Atomic # 7 Polarization: -128.31 SS G_CDS: -3.71 Total: -132.03 kcal Atomic # 8 Polarization: -16.12 SS G_CDS: 0.68 Total: -15.44 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 1.90 Total: 47.95 kcal Total: -70.59 3.30 -67.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480035754.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.029 kcal (2) G-P(sol) polarization free energy of solvation -70.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.292 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds