Wall clock time and date at job start Sat Apr 11 2020 06:17:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86803 * 120.00088 * 2 1 4 4 H 1.48507 * 109.46671 * 269.99746 * 3 2 1 5 5 H 1.48495 * 109.47180 * 29.99395 * 3 2 1 6 6 H 1.48493 * 109.47173 * 149.99846 * 3 2 1 7 7 C 1.38807 * 120.00021 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00303 * 180.02562 * 7 2 1 9 9 N 1.36941 * 120.00078 * 0.02562 * 7 2 1 10 10 C 1.46498 * 120.00097 * 179.97438 * 9 7 2 11 11 H 1.09000 * 109.47132 * 35.00083 * 10 9 7 12 12 C 1.53006 * 109.47174 * 154.99533 * 10 9 7 13 13 N 1.46505 * 109.47199 * 305.00200 * 12 10 9 14 14 C 1.34777 * 119.99567 * 179.97438 * 13 12 10 15 15 O 1.21581 * 120.00076 * 0.02562 * 14 13 12 16 16 C 1.47556 * 119.99443 * 179.97438 * 14 13 12 17 17 C 1.38915 * 120.29905 * 0.02562 * 16 14 13 18 18 C 1.40557 * 118.06525 * 180.25623 * 17 16 14 19 19 C 1.40547 * 121.12623 * 180.31756 * 18 17 16 20 20 C 1.36146 * 119.63600 * 179.67646 * 19 18 17 21 21 C 1.39328 * 120.83651 * 359.67811 * 20 19 18 22 22 C 1.36144 * 121.07185 * 0.04775 * 21 20 19 23 23 C 1.40527 * 119.82931 * 359.97156 * 22 21 20 24 24 N 1.33811 * 120.73958 * 180.02562 * 23 22 21 25 25 C 1.31387 * 121.66041 * 179.97438 * 24 23 22 26 26 O 1.35412 * 119.31999 * 179.97438 * 25 24 23 27 27 C 1.52995 * 109.47563 * 274.99690 * 10 9 7 28 28 C 1.52997 * 117.49986 * 128.74115 * 27 10 9 29 29 C 1.53008 * 117.49519 * 60.08318 * 27 10 9 30 30 H 0.97003 * 119.99984 * 0.02562 * 1 2 3 31 31 H 0.96997 * 119.99844 * 359.97438 * 9 7 2 32 32 H 1.08996 * 109.47102 * 184.99738 * 12 10 9 33 33 H 1.08997 * 109.46782 * 64.99961 * 12 10 9 34 34 H 0.97003 * 119.99721 * 359.97438 * 13 12 10 35 35 H 1.08002 * 120.96324 * 359.97340 * 17 16 14 36 36 H 1.07998 * 120.18175 * 359.40315 * 19 18 17 37 37 H 1.08006 * 119.58097 * 179.69893 * 20 19 18 38 38 H 1.07998 * 119.46418 * 180.02562 * 21 20 19 39 39 H 1.08002 * 120.08178 * 179.97438 * 22 21 20 40 40 H 0.96696 * 114.00408 * 269.98043 * 26 25 24 41 41 H 1.08999 * 115.54960 * 274.42238 * 27 10 9 42 42 H 1.08996 * 117.49941 * 0.02562 * 28 27 10 43 43 H 1.09007 * 117.49316 * 145.02570 * 28 27 10 44 44 H 1.08999 * 117.49935 * 214.98044 * 29 27 10 45 45 H 1.08997 * 117.49742 * 0.02562 * 29 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4002 5 1 1.4477 2.6527 0.6999 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0005 11 1 2.9687 -3.5505 0.5900 12 6 1.1809 -4.7521 0.6103 13 7 0.7343 -4.3354 1.9419 14 6 -0.0555 -5.1473 2.6724 15 8 -0.3969 -6.2256 2.2265 16 6 -0.5048 -4.7278 4.0139 17 6 -0.1179 -3.4973 4.5296 18 6 -0.5685 -3.1474 5.8142 19 6 -0.2215 -1.9157 6.3954 20 6 -0.6803 -1.6051 7.6390 21 6 -1.4956 -2.4902 8.3412 22 6 -1.8557 -3.6891 7.8059 23 6 -1.4025 -4.0471 6.5248 24 7 -1.7457 -5.2206 5.9811 25 6 -1.3327 -5.5734 4.7847 26 8 -1.7085 -6.7727 4.2805 27 6 2.4219 -4.0357 -1.4364 28 6 3.8821 -4.3892 -1.7256 29 6 3.3028 -3.0622 -2.2222 30 1 -0.4850 0.8401 -0.0004 31 1 0.3556 -2.3880 0.0005 32 1 1.7558 -5.6745 0.6920 33 1 0.3133 -4.9200 -0.0278 34 1 1.0071 -3.4752 2.2978 35 1 0.5145 -2.8308 3.9618 36 1 0.4093 -1.2214 5.8603 37 1 -0.4091 -0.6604 8.0868 38 1 -1.8474 -2.2210 9.3261 39 1 -2.4881 -4.3633 8.3645 40 1 -1.1018 -7.4955 4.4912 41 1 1.6540 -4.5775 -1.9885 42 1 4.5835 -4.3522 -0.8921 43 1 4.0748 -5.1634 -2.4684 44 1 3.1146 -2.9639 -3.2913 45 1 3.6233 -2.1521 -1.7153 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001480037182.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:48 Heat of formation + Delta-G solvation = 21.159440 kcal Electronic energy + Delta-G solvation = -28993.811155 eV Core-core repulsion = 24977.816353 eV Total energy + Delta-G solvation = -4015.994802 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.17828 -39.38346 -38.19141 -37.44783 -35.90493 -34.69903 -33.83674 -33.31539 -31.20630 -30.36167 -29.87197 -28.00640 -24.99945 -24.05653 -23.50245 -22.54839 -22.12161 -21.73840 -20.64048 -19.73956 -19.07645 -18.29452 -17.88107 -17.16318 -16.52360 -15.83396 -15.63463 -15.24172 -15.07008 -14.75530 -14.66384 -14.48983 -14.25956 -13.92899 -13.67999 -13.52424 -13.45824 -13.21736 -12.89935 -12.18113 -12.08980 -11.85534 -11.54891 -11.49056 -11.42702 -11.22604 -10.93006 -10.92694 -10.78582 -10.68154 -10.19527 -10.09122 -9.98542 -9.65421 -9.42284 -9.31781 -9.05399 -8.91266 -8.65644 -8.42809 -7.12820 -5.88838 -3.19139 0.05867 0.43890 1.69971 2.40697 3.26397 3.32176 3.33626 3.39182 3.41460 3.52550 3.92770 4.34565 4.37228 4.38245 4.53015 4.55719 4.60709 4.92728 4.97859 5.09369 5.16402 5.20394 5.40432 5.46084 5.50923 5.54574 5.55760 5.69366 5.70586 5.81427 5.84408 5.95224 6.02366 6.09788 6.12758 6.20329 6.22992 6.33284 6.49506 6.53996 6.57574 6.71215 6.80621 6.92397 7.45823 7.57832 7.71721 7.81657 8.27576 8.43763 9.39931 9.93804 10.30024 11.32609 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.009625 B = 0.003590 C = 0.002751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2908.366407 B = 7798.188210 C =10175.342008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.007 4.007 3 Si 0.902 3.098 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.240 4.240 8 H 0.071 0.929 9 N -0.718 5.718 10 C 0.193 3.807 11 H 0.055 0.945 12 C 0.120 3.880 13 N -0.707 5.707 14 C 0.559 3.441 15 O -0.530 6.530 16 C -0.199 4.199 17 C 0.005 3.995 18 C -0.122 4.122 19 C -0.075 4.075 20 C -0.128 4.128 21 C -0.086 4.086 22 C -0.107 4.107 23 C 0.167 3.833 24 N -0.505 5.505 25 C 0.394 3.606 26 O -0.459 6.459 27 C -0.159 4.159 28 C -0.196 4.196 29 C -0.156 4.156 30 H 0.256 0.744 31 H 0.386 0.614 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.407 0.593 35 H 0.155 0.845 36 H 0.138 0.862 37 H 0.130 0.870 38 H 0.131 0.869 39 H 0.137 0.863 40 H 0.404 0.596 41 H 0.091 0.909 42 H 0.086 0.914 43 H 0.081 0.919 44 H 0.079 0.921 45 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.154 -7.205 13.494 15.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.204 4.204 3 Si 0.733 3.267 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.371 4.371 8 H 0.089 0.911 9 N -0.359 5.359 10 C 0.082 3.918 11 H 0.073 0.927 12 C -0.004 4.004 13 N -0.359 5.359 14 C 0.344 3.656 15 O -0.408 6.408 16 C -0.205 4.205 17 C -0.021 4.021 18 C -0.124 4.124 19 C -0.094 4.094 20 C -0.146 4.146 21 C -0.106 4.106 22 C -0.125 4.125 23 C 0.046 3.954 24 N -0.225 5.225 25 C 0.199 3.801 26 O -0.266 6.266 27 C -0.181 4.181 28 C -0.234 4.234 29 C -0.193 4.193 30 H 0.066 0.934 31 H 0.220 0.780 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.245 0.755 35 H 0.173 0.827 36 H 0.156 0.844 37 H 0.148 0.852 38 H 0.149 0.851 39 H 0.154 0.846 40 H 0.264 0.736 41 H 0.109 0.891 42 H 0.105 0.895 43 H 0.099 0.901 44 H 0.098 0.902 45 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 1.014 -8.072 13.454 15.723 hybrid contribution 1.034 1.739 -0.476 2.078 sum 2.049 -6.334 12.978 14.586 Atomic orbital electron populations 1.69662 1.05045 1.25769 1.57010 1.24717 0.95401 0.97538 1.02753 0.86288 0.78661 0.84129 0.77667 1.21688 1.21826 1.20771 1.19157 0.90828 0.83811 1.43305 0.91107 1.42478 1.05848 0.99412 1.88127 1.20063 0.94285 0.86101 0.91339 0.92672 1.21639 0.98756 0.97632 0.82417 1.45882 1.50366 1.21634 1.18065 1.17751 0.79018 0.84752 0.84091 1.90782 1.56271 1.22069 1.71644 1.21180 1.03680 0.97661 0.98030 1.22155 0.93367 0.93639 0.92957 1.18798 1.01400 0.96842 0.95371 1.21159 0.98306 0.94577 0.95366 1.20944 0.98484 1.00180 0.95038 1.20980 0.96367 0.93278 0.99969 1.20789 1.00878 0.97386 0.93481 1.18654 0.93747 0.88628 0.94418 1.67532 1.24359 1.18447 1.12134 1.19164 0.87058 0.87636 0.86216 1.84720 1.51996 1.15694 1.74208 1.23020 0.92212 1.03127 0.99743 1.22964 0.97232 0.99833 1.03356 1.22781 1.03356 0.94022 0.99127 0.93410 0.78021 0.91375 0.91511 0.75535 0.82743 0.84418 0.85203 0.85129 0.84559 0.73601 0.89079 0.89548 0.90063 0.90201 0.87731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -25.90 13.06 55.49 0.72 -25.18 16 2 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 3 Si 0.90 20.73 29.55 -169.99 -5.02 15.70 16 4 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 6 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 7 C -0.24 -5.83 8.63 -15.06 -0.13 -5.96 16 8 H 0.07 1.68 6.91 -52.48 -0.36 1.32 16 9 N -0.72 -15.65 4.54 -53.42 -0.24 -15.89 16 10 C 0.19 3.39 2.70 -67.93 -0.18 3.20 16 11 H 0.06 0.97 7.84 -51.93 -0.41 0.57 16 12 C 0.12 1.95 5.22 -4.04 -0.02 1.93 16 13 N -0.71 -11.29 5.34 -61.34 -0.33 -11.62 16 14 C 0.56 9.30 7.77 -12.46 -0.10 9.20 16 15 O -0.53 -10.03 15.14 -16.68 -0.25 -10.28 16 16 C -0.20 -2.99 5.90 -104.71 -0.62 -3.61 16 17 C 0.00 0.07 9.38 -38.46 -0.36 -0.29 16 18 C -0.12 -1.56 5.74 -106.80 -0.61 -2.18 16 19 C -0.08 -0.80 9.77 -39.46 -0.39 -1.18 16 20 C -0.13 -1.14 9.96 -39.93 -0.40 -1.54 16 21 C -0.09 -0.74 9.94 -39.93 -0.40 -1.14 16 22 C -0.11 -1.14 9.97 -39.47 -0.39 -1.53 16 23 C 0.17 2.25 6.61 -84.79 -0.56 1.69 16 24 N -0.51 -7.54 10.33 -10.76 -0.11 -7.66 16 25 C 0.39 6.01 7.74 -16.60 -0.13 5.88 16 26 O -0.46 -6.73 11.59 -39.90 -0.46 -7.20 16 27 C -0.16 -2.66 5.36 -90.62 -0.49 -3.15 16 28 C -0.20 -2.85 10.18 -26.69 -0.27 -3.12 16 29 C -0.16 -2.66 9.78 -26.69 -0.26 -2.92 16 30 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 31 H 0.39 9.34 7.80 -40.82 -0.32 9.02 16 32 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.41 6.39 6.21 -40.82 -0.25 6.13 16 35 H 0.16 1.87 6.47 -52.49 -0.34 1.53 16 36 H 0.14 1.26 8.06 -52.49 -0.42 0.84 16 37 H 0.13 0.83 8.06 -52.48 -0.42 0.41 16 38 H 0.13 0.74 8.06 -52.49 -0.42 0.31 16 39 H 0.14 1.26 8.06 -52.49 -0.42 0.84 16 40 H 0.40 4.06 9.06 45.56 0.41 4.47 16 41 H 0.09 1.50 8.11 -51.93 -0.42 1.08 16 42 H 0.09 1.20 8.05 -51.93 -0.42 0.78 16 43 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 44 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 45 H 0.10 2.00 6.23 -51.93 -0.32 1.67 16 LS Contribution 380.79 15.07 5.74 5.74 Total: -1.00 -31.25 380.79 -10.30 -41.56 By element: Atomic # 1 Polarization: 24.77 SS G_CDS: -4.95 Total: 19.83 kcal Atomic # 6 Polarization: 0.40 SS G_CDS: -5.40 Total: -5.00 kcal Atomic # 7 Polarization: -60.39 SS G_CDS: 0.04 Total: -60.35 kcal Atomic # 8 Polarization: -16.76 SS G_CDS: -0.72 Total: -17.47 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -31.25 -10.30 -41.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480037182.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.716 kcal (2) G-P(sol) polarization free energy of solvation -31.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.556 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds