Wall clock time and date at job start Sat Apr 11 2020 06:17:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86803 * 120.00088 * 2 1 4 4 H 1.48507 * 109.46671 * 269.99746 * 3 2 1 5 5 H 1.48495 * 109.47180 * 29.99395 * 3 2 1 6 6 H 1.48493 * 109.47173 * 149.99846 * 3 2 1 7 7 C 1.38807 * 120.00021 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00303 * 180.02562 * 7 2 1 9 9 N 1.36941 * 120.00078 * 0.02562 * 7 2 1 10 10 C 1.46498 * 120.00097 * 179.97438 * 9 7 2 11 11 H 1.09000 * 109.47132 * 35.00083 * 10 9 7 12 12 C 1.53006 * 109.47174 * 154.99533 * 10 9 7 13 13 N 1.46505 * 109.47199 * 305.00200 * 12 10 9 14 14 C 1.34777 * 119.99567 * 179.97438 * 13 12 10 15 15 O 1.21581 * 120.00076 * 0.02562 * 14 13 12 16 16 C 1.47556 * 119.99443 * 179.97438 * 14 13 12 17 17 C 1.38915 * 120.29905 * 0.02562 * 16 14 13 18 18 C 1.40557 * 118.06525 * 180.25623 * 17 16 14 19 19 C 1.40547 * 121.12623 * 180.31756 * 18 17 16 20 20 C 1.36146 * 119.63600 * 179.67646 * 19 18 17 21 21 C 1.39328 * 120.83651 * 359.67811 * 20 19 18 22 22 C 1.36144 * 121.07185 * 0.04775 * 21 20 19 23 23 C 1.40527 * 119.82931 * 359.97156 * 22 21 20 24 24 N 1.33811 * 120.73958 * 180.02562 * 23 22 21 25 25 C 1.31387 * 121.66041 * 179.97438 * 24 23 22 26 26 O 1.35412 * 119.31999 * 179.97438 * 25 24 23 27 27 C 1.52995 * 109.47563 * 274.99690 * 10 9 7 28 28 C 1.52997 * 117.49986 * 128.74115 * 27 10 9 29 29 C 1.53008 * 117.49519 * 60.08318 * 27 10 9 30 30 H 0.97003 * 119.99984 * 0.02562 * 1 2 3 31 31 H 0.96997 * 119.99844 * 359.97438 * 9 7 2 32 32 H 1.08996 * 109.47102 * 184.99738 * 12 10 9 33 33 H 1.08997 * 109.46782 * 64.99961 * 12 10 9 34 34 H 0.97003 * 119.99721 * 359.97438 * 13 12 10 35 35 H 1.08002 * 120.96324 * 359.97340 * 17 16 14 36 36 H 1.07998 * 120.18175 * 359.40315 * 19 18 17 37 37 H 1.08006 * 119.58097 * 179.69893 * 20 19 18 38 38 H 1.07998 * 119.46418 * 180.02562 * 21 20 19 39 39 H 1.08002 * 120.08178 * 179.97438 * 22 21 20 40 40 H 0.96696 * 114.00408 * 269.98043 * 26 25 24 41 41 H 1.08999 * 115.54960 * 274.42238 * 27 10 9 42 42 H 1.08996 * 117.49941 * 0.02562 * 28 27 10 43 43 H 1.09007 * 117.49316 * 145.02570 * 28 27 10 44 44 H 1.08999 * 117.49935 * 214.98044 * 29 27 10 45 45 H 1.08997 * 117.49742 * 0.02562 * 29 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4002 5 1 1.4477 2.6527 0.6999 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0005 11 1 2.9687 -3.5505 0.5900 12 6 1.1809 -4.7521 0.6103 13 7 0.7343 -4.3354 1.9419 14 6 -0.0555 -5.1473 2.6724 15 8 -0.3969 -6.2256 2.2265 16 6 -0.5048 -4.7278 4.0139 17 6 -0.1179 -3.4973 4.5296 18 6 -0.5685 -3.1474 5.8142 19 6 -0.2215 -1.9157 6.3954 20 6 -0.6803 -1.6051 7.6390 21 6 -1.4956 -2.4902 8.3412 22 6 -1.8557 -3.6891 7.8059 23 6 -1.4025 -4.0471 6.5248 24 7 -1.7457 -5.2206 5.9811 25 6 -1.3327 -5.5734 4.7847 26 8 -1.7085 -6.7727 4.2805 27 6 2.4219 -4.0357 -1.4364 28 6 3.8821 -4.3892 -1.7256 29 6 3.3028 -3.0622 -2.2222 30 1 -0.4850 0.8401 -0.0004 31 1 0.3556 -2.3880 0.0005 32 1 1.7558 -5.6745 0.6920 33 1 0.3133 -4.9200 -0.0278 34 1 1.0071 -3.4752 2.2978 35 1 0.5145 -2.8308 3.9618 36 1 0.4093 -1.2214 5.8603 37 1 -0.4091 -0.6604 8.0868 38 1 -1.8474 -2.2210 9.3261 39 1 -2.4881 -4.3633 8.3645 40 1 -1.1018 -7.4955 4.4912 41 1 1.6540 -4.5775 -1.9885 42 1 4.5835 -4.3522 -0.8921 43 1 4.0748 -5.1634 -2.4684 44 1 3.1146 -2.9639 -3.2913 45 1 3.6233 -2.1521 -1.7153 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001480037182.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:47 Heat of formation + Delta-G solvation = -0.459280 kcal Electronic energy + Delta-G solvation = -28994.748613 eV Core-core repulsion = 24977.816353 eV Total energy + Delta-G solvation = -4016.932260 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.19653 -40.59325 -39.31919 -38.77764 -36.87612 -36.08266 -35.23673 -34.63696 -32.73763 -31.51591 -30.76407 -29.53547 -26.15682 -25.47059 -24.78465 -23.81267 -23.08589 -22.99442 -21.91125 -21.10146 -20.13392 -19.55643 -19.08262 -18.67456 -17.59710 -16.97109 -16.81627 -16.70336 -16.31461 -16.01969 -15.83174 -15.66388 -15.37562 -15.23339 -14.98495 -14.83556 -14.68568 -14.38971 -14.19754 -13.68651 -13.00350 -12.98261 -12.89800 -12.68751 -12.63170 -12.44850 -12.42101 -12.40137 -12.24128 -11.96987 -11.71321 -11.69407 -11.31813 -10.99327 -10.92345 -10.77230 -10.52260 -10.12198 -9.74599 -9.30473 -8.98827 -7.86630 -5.14799 -0.90311 -0.53152 0.79066 1.42234 1.50473 1.53300 1.59381 2.04375 2.17261 2.50326 2.59422 2.96637 3.09330 3.35458 3.45549 3.49779 3.54372 3.73366 3.80520 3.99976 4.02301 4.18196 4.19009 4.29286 4.33173 4.36725 4.40881 4.54278 4.58707 4.62069 4.69188 4.84826 4.90928 4.92073 5.01975 5.15847 5.17630 5.27854 5.35581 5.41970 5.44909 5.45425 5.50910 5.64072 5.81556 6.32215 6.44042 6.53416 6.73956 7.13320 7.40904 8.11311 8.37126 9.35888 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.009625 B = 0.003590 C = 0.002751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2908.366407 B = 7798.188210 C =10175.342008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.966 5.966 2 C -0.066 4.066 3 Si 0.957 3.043 4 H -0.298 1.298 5 H -0.302 1.302 6 H -0.267 1.267 7 C -0.218 4.218 8 H 0.079 0.921 9 N -0.724 5.724 10 C 0.198 3.802 11 H 0.062 0.938 12 C 0.128 3.872 13 N -0.704 5.704 14 C 0.560 3.440 15 O -0.558 6.558 16 C -0.220 4.220 17 C 0.012 3.988 18 C -0.135 4.135 19 C -0.089 4.089 20 C -0.118 4.118 21 C -0.067 4.067 22 C -0.123 4.123 23 C 0.146 3.854 24 N -0.519 5.519 25 C 0.379 3.621 26 O -0.474 6.474 27 C -0.174 4.174 28 C -0.161 4.161 29 C -0.174 4.174 30 H 0.247 0.753 31 H 0.372 0.628 32 H 0.085 0.915 33 H 0.051 0.949 34 H 0.409 0.591 35 H 0.163 0.837 36 H 0.150 0.850 37 H 0.164 0.836 38 H 0.170 0.830 39 H 0.147 0.853 40 H 0.418 0.582 41 H 0.092 0.908 42 H 0.097 0.903 43 H 0.105 0.895 44 H 0.084 0.916 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.711 -6.616 15.276 17.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.259 4.259 3 Si 0.788 3.212 4 H -0.226 1.226 5 H -0.229 1.229 6 H -0.191 1.191 7 C -0.350 4.350 8 H 0.097 0.903 9 N -0.363 5.363 10 C 0.089 3.911 11 H 0.079 0.921 12 C 0.004 3.996 13 N -0.356 5.356 14 C 0.347 3.653 15 O -0.438 6.438 16 C -0.226 4.226 17 C -0.014 4.014 18 C -0.137 4.137 19 C -0.107 4.107 20 C -0.135 4.135 21 C -0.087 4.087 22 C -0.141 4.141 23 C 0.024 3.976 24 N -0.239 5.239 25 C 0.185 3.815 26 O -0.284 6.284 27 C -0.195 4.195 28 C -0.199 4.199 29 C -0.211 4.211 30 H 0.056 0.944 31 H 0.204 0.796 32 H 0.103 0.897 33 H 0.070 0.930 34 H 0.246 0.754 35 H 0.180 0.820 36 H 0.168 0.832 37 H 0.181 0.819 38 H 0.187 0.813 39 H 0.165 0.835 40 H 0.280 0.720 41 H 0.110 0.890 42 H 0.116 0.884 43 H 0.123 0.877 44 H 0.102 0.898 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 2.637 -7.515 15.244 17.199 hybrid contribution 0.587 1.559 -0.906 1.896 sum 3.224 -5.956 14.337 15.857 Atomic orbital electron populations 1.69812 1.06438 1.25561 1.59915 1.25324 0.95941 1.00272 1.04355 0.85379 0.78041 0.80824 0.76941 1.22595 1.22861 1.19149 1.19458 0.91165 0.84476 1.39877 0.90348 1.42591 1.05279 1.00413 1.88063 1.20156 0.94095 0.84624 0.92243 0.92050 1.21542 0.98073 0.97776 0.82222 1.45835 1.50275 1.21586 1.17872 1.17974 0.78455 0.84293 0.84575 1.90751 1.57369 1.23226 1.72459 1.21012 1.05352 0.98770 0.97496 1.22284 0.92793 0.92955 0.93367 1.18991 1.01690 0.97881 0.95182 1.21408 0.98996 0.93899 0.96440 1.21411 0.96850 1.01216 0.94050 1.21456 0.94399 0.91745 1.01093 1.21049 1.01634 0.98783 0.92662 1.19130 0.94339 0.88448 0.95653 1.67542 1.24805 1.19499 1.12057 1.19243 0.87748 0.87865 0.86653 1.84668 1.52874 1.16264 1.74558 1.22920 0.93980 1.03928 0.98693 1.23035 0.95110 0.98241 1.03494 1.22736 1.04797 0.94362 0.99230 0.94432 0.79614 0.89684 0.93040 0.75363 0.81988 0.83202 0.81880 0.81275 0.83491 0.71984 0.88982 0.88413 0.87664 0.89774 0.89945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -55.12 13.06 21.65 0.28 -54.83 16 2 C -0.07 -3.47 5.50 84.86 0.47 -3.00 16 3 Si 0.96 42.78 29.55 68.60 2.03 44.81 16 4 H -0.30 -13.59 7.11 99.48 0.71 -12.88 16 5 H -0.30 -13.84 7.11 99.48 0.71 -13.13 16 6 H -0.27 -11.08 7.11 99.48 0.71 -10.38 16 7 C -0.22 -10.52 8.63 84.03 0.73 -9.80 16 8 H 0.08 3.64 6.91 -2.91 -0.02 3.62 16 9 N -0.72 -31.67 4.54 -322.94 -1.47 -33.13 16 10 C 0.20 6.80 2.70 44.99 0.12 6.92 16 11 H 0.06 2.06 7.84 -2.39 -0.02 2.04 16 12 C 0.13 4.14 5.22 86.38 0.45 4.59 16 13 N -0.70 -22.76 5.34 -466.24 -2.49 -25.25 16 14 C 0.56 19.22 7.77 86.70 0.67 19.90 16 15 O -0.56 -21.77 15.14 17.03 0.26 -21.51 16 16 C -0.22 -6.86 5.90 -19.92 -0.12 -6.97 16 17 C 0.01 0.33 9.38 23.00 0.22 0.54 16 18 C -0.14 -3.41 5.74 -21.28 -0.12 -3.53 16 19 C -0.09 -1.70 9.77 22.35 0.22 -1.48 16 20 C -0.12 -1.66 9.96 22.05 0.22 -1.44 16 21 C -0.07 -0.91 9.94 22.04 0.22 -0.69 16 22 C -0.12 -2.40 9.97 22.34 0.22 -2.18 16 23 C 0.15 3.87 6.61 40.27 0.27 4.14 16 24 N -0.52 -15.87 10.33 -301.41 -3.11 -18.99 16 25 C 0.38 12.07 7.74 85.50 0.66 12.73 16 26 O -0.47 -14.62 11.59 -66.05 -0.77 -15.39 16 27 C -0.17 -5.57 5.36 -10.79 -0.06 -5.63 16 28 C -0.16 -4.21 10.18 30.62 0.31 -3.90 16 29 C -0.17 -5.71 9.78 30.62 0.30 -5.41 16 30 H 0.25 13.97 8.31 -92.71 -0.77 13.20 16 31 H 0.37 18.39 7.80 -92.71 -0.72 17.67 16 32 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 33 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.41 12.94 6.21 -92.71 -0.58 12.37 16 35 H 0.16 3.97 6.47 -2.91 -0.02 3.95 16 36 H 0.15 2.44 8.06 -2.91 -0.02 2.42 16 37 H 0.16 1.26 8.06 -2.91 -0.02 1.23 16 38 H 0.17 1.01 8.06 -2.91 -0.02 0.99 16 39 H 0.15 2.47 8.06 -2.91 -0.02 2.45 16 40 H 0.42 9.04 9.06 -74.06 -0.67 8.37 16 41 H 0.09 2.95 8.11 -2.39 -0.02 2.93 16 42 H 0.10 2.37 8.05 -2.39 -0.02 2.35 16 43 H 0.11 2.30 8.14 -2.38 -0.02 2.28 16 44 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 45 H 0.08 3.08 6.23 -2.39 -0.01 3.06 16 Total: -1.00 -68.68 380.79 -1.39 -70.07 By element: Atomic # 1 Polarization: 50.34 SS G_CDS: -0.90 Total: 49.44 kcal Atomic # 6 Polarization: 0.01 SS G_CDS: 4.77 Total: 4.79 kcal Atomic # 7 Polarization: -125.41 SS G_CDS: -6.79 Total: -132.20 kcal Atomic # 8 Polarization: -36.40 SS G_CDS: -0.51 Total: -36.90 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 2.03 Total: 44.81 kcal Total: -68.68 -1.39 -70.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480037182.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.611 kcal (2) G-P(sol) polarization free energy of solvation -68.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds