Wall clock time and date at job start Sat Apr 11 2020 06:17:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86796 * 120.00158 * 2 1 4 4 H 1.48504 * 109.47572 * 240.00341 * 3 2 1 5 5 H 1.48501 * 109.47057 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47113 * 120.00394 * 3 2 1 7 7 C 1.38812 * 120.00053 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00572 * 179.97438 * 7 2 1 9 9 N 1.36941 * 120.00040 * 0.02562 * 7 2 1 10 10 C 1.46491 * 120.00215 * 179.97438 * 9 7 2 11 11 H 1.09005 * 109.47484 * 324.99987 * 10 9 7 12 12 C 1.53005 * 109.47382 * 204.99713 * 10 9 7 13 13 N 1.46500 * 109.46812 * 54.99900 * 12 10 9 14 14 C 1.34777 * 119.99779 * 179.97438 * 13 12 10 15 15 O 1.21576 * 120.00139 * 0.02562 * 14 13 12 16 16 C 1.47561 * 119.99675 * 180.02562 * 14 13 12 17 17 C 1.38905 * 120.30216 * 359.97438 * 16 14 13 18 18 C 1.40558 * 118.06968 * 180.02562 * 17 16 14 19 19 C 1.40545 * 121.12208 * 180.02562 * 18 17 16 20 20 C 1.36147 * 119.63583 * 180.02562 * 19 18 17 21 21 C 1.39333 * 120.83022 * 359.70314 * 20 19 18 22 22 C 1.36139 * 121.07902 * 0.58146 * 21 20 19 23 23 C 1.40537 * 119.82617 * 359.44530 * 22 21 20 24 24 N 1.33815 * 120.75031 * 180.27929 * 23 22 21 25 25 C 1.31382 * 121.66226 * 179.97438 * 24 23 22 26 26 O 1.35410 * 119.31688 * 179.97438 * 25 24 23 27 27 C 1.53004 * 109.47173 * 84.99818 * 10 9 7 28 28 C 1.53001 * 117.49770 * 8.74530 * 27 10 9 29 29 C 1.53004 * 117.49799 * 300.08497 * 27 10 9 30 30 H 0.97001 * 120.00190 * 359.97438 * 1 2 3 31 31 H 0.96998 * 119.99454 * 359.97438 * 9 7 2 32 32 H 1.09001 * 109.46723 * 295.00213 * 12 10 9 33 33 H 1.08998 * 109.46996 * 174.99952 * 12 10 9 34 34 H 0.96998 * 120.00122 * 0.02562 * 13 12 10 35 35 H 1.08002 * 120.96333 * 0.04929 * 17 16 14 36 36 H 1.07997 * 120.17712 * 0.02562 * 19 18 17 37 37 H 1.08003 * 119.58388 * 179.97438 * 20 19 18 38 38 H 1.08003 * 119.46100 * 180.28176 * 21 20 19 39 39 H 1.08002 * 120.08956 * 179.72871 * 22 21 20 40 40 H 0.96700 * 114.00458 * 89.99812 * 26 25 24 41 41 H 1.08998 * 115.55190 * 154.41773 * 27 10 9 42 42 H 1.08999 * 117.49999 * 0.02562 * 28 27 10 43 43 H 1.09001 * 117.49321 * 145.01834 * 28 27 10 44 44 H 1.08992 * 117.49887 * 214.97759 * 29 27 10 45 45 H 1.09002 * 117.49737 * 359.97438 * 29 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1039 1.6963 1.2124 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0016 10 6 2.0579 -3.6568 -0.0027 11 1 2.9687 -3.5501 -0.5921 12 6 1.1807 -4.7516 -0.6133 13 7 0.7341 -4.3338 -1.9445 14 6 -0.0549 -5.1454 -2.6761 15 8 -0.3964 -6.2240 -2.2311 16 6 -0.5043 -4.7247 -4.0172 17 6 -0.1184 -3.4934 -4.5314 18 6 -0.5740 -3.1399 -5.8133 19 6 -0.2222 -1.9101 -6.3957 20 6 -0.6810 -1.5983 -7.6390 21 6 -1.4905 -2.4859 -8.3448 22 6 -1.8551 -3.6829 -7.8086 23 6 -1.4026 -4.0418 -6.5274 24 7 -1.7451 -5.2161 -5.9849 25 6 -1.3319 -5.5700 -4.7890 26 8 -1.7079 -6.7695 -4.2856 27 6 2.4219 -4.0369 1.4340 28 6 1.8133 -3.2008 2.5616 29 6 3.2995 -3.0622 2.2219 30 1 -0.4850 0.8400 0.0004 31 1 0.3555 -2.3880 -0.0016 32 1 0.3132 -4.9200 0.0248 33 1 1.7557 -5.6740 -0.6958 34 1 1.0068 -3.4733 -2.2997 35 1 0.5137 -2.8273 -3.9630 36 1 0.4086 -1.2163 -5.8598 37 1 -0.4104 -0.6528 -8.0856 38 1 -1.8383 -2.2178 -9.3316 39 1 -2.4868 -4.3569 -8.3681 40 1 -1.1017 -7.4925 -4.4974 41 1 2.5631 -5.1020 1.6171 42 1 1.1534 -2.3803 2.2800 43 1 1.5545 -3.7160 3.4867 44 1 4.0177 -3.4861 2.9236 45 1 3.6179 -2.1504 1.7165 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001480037185.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:51 Heat of formation + Delta-G solvation = 24.409411 kcal Electronic energy + Delta-G solvation = -29117.777106 eV Core-core repulsion = 25101.923233 eV Total energy + Delta-G solvation = -4015.853873 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.17790 -39.38535 -38.20728 -37.49837 -35.90490 -34.54543 -33.75333 -33.24213 -31.16268 -30.32136 -29.87227 -28.10310 -25.00135 -24.04522 -23.53959 -22.71333 -22.16147 -21.55582 -20.61091 -19.34807 -19.01938 -18.24142 -17.84596 -17.18017 -16.53055 -15.85575 -15.63674 -15.29640 -15.02046 -14.74412 -14.66142 -14.50937 -14.28396 -13.89454 -13.60429 -13.55842 -13.48723 -13.02481 -12.91023 -12.13516 -12.09029 -11.85878 -11.55373 -11.48884 -11.34723 -11.21895 -10.93895 -10.90649 -10.68667 -10.57065 -10.21257 -10.07837 -9.74424 -9.57209 -9.39288 -9.19735 -9.04625 -8.91061 -8.65086 -8.42891 -7.14617 -5.90361 -3.21274 0.05896 0.43884 1.69966 2.40730 3.26583 3.32320 3.33435 3.39214 3.40603 3.52661 3.92876 4.36176 4.38105 4.43519 4.55450 4.59279 4.60738 4.92731 4.97947 5.09534 5.19881 5.31650 5.40080 5.50634 5.52477 5.55504 5.68279 5.71957 5.80438 5.81578 5.93342 6.00034 6.03370 6.09774 6.20299 6.22933 6.35252 6.39382 6.57487 6.60542 6.67916 6.81887 6.95864 7.24091 7.45815 7.58407 7.71776 7.82067 8.26355 8.44227 9.38730 9.92257 10.28554 11.30677 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.010110 B = 0.003592 C = 0.002760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2768.838991 B = 7794.011293 C =10143.151129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.006 4.006 3 Si 0.902 3.098 4 H -0.286 1.286 5 H -0.292 1.292 6 H -0.286 1.286 7 C -0.243 4.243 8 H 0.071 0.929 9 N -0.718 5.718 10 C 0.192 3.808 11 H 0.057 0.943 12 C 0.120 3.880 13 N -0.707 5.707 14 C 0.558 3.442 15 O -0.530 6.530 16 C -0.199 4.199 17 C 0.005 3.995 18 C -0.122 4.122 19 C -0.075 4.075 20 C -0.128 4.128 21 C -0.086 4.086 22 C -0.107 4.107 23 C 0.167 3.833 24 N -0.505 5.505 25 C 0.394 3.606 26 O -0.459 6.459 27 C -0.178 4.178 28 C -0.163 4.163 29 C -0.175 4.175 30 H 0.257 0.743 31 H 0.387 0.613 32 H 0.068 0.932 33 H 0.066 0.934 34 H 0.407 0.593 35 H 0.155 0.845 36 H 0.138 0.862 37 H 0.130 0.870 38 H 0.131 0.869 39 H 0.137 0.863 40 H 0.404 0.596 41 H 0.086 0.914 42 H 0.118 0.882 43 H 0.069 0.931 44 H 0.071 0.929 45 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.606 -6.827 -13.360 15.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.202 4.202 3 Si 0.733 3.267 4 H -0.213 1.213 5 H -0.218 1.218 6 H -0.212 1.212 7 C -0.374 4.374 8 H 0.089 0.911 9 N -0.360 5.360 10 C 0.081 3.919 11 H 0.075 0.925 12 C -0.004 4.004 13 N -0.359 5.359 14 C 0.344 3.656 15 O -0.408 6.408 16 C -0.205 4.205 17 C -0.021 4.021 18 C -0.124 4.124 19 C -0.094 4.094 20 C -0.146 4.146 21 C -0.106 4.106 22 C -0.125 4.125 23 C 0.045 3.955 24 N -0.225 5.225 25 C 0.199 3.801 26 O -0.266 6.266 27 C -0.200 4.200 28 C -0.200 4.200 29 C -0.212 4.212 30 H 0.067 0.933 31 H 0.221 0.779 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.244 0.756 35 H 0.173 0.827 36 H 0.156 0.844 37 H 0.148 0.852 38 H 0.149 0.851 39 H 0.154 0.846 40 H 0.264 0.736 41 H 0.104 0.896 42 H 0.136 0.864 43 H 0.087 0.913 44 H 0.090 0.910 45 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 0.468 -7.695 -13.307 15.378 hybrid contribution 1.122 1.685 0.407 2.065 sum 1.590 -6.010 -12.900 14.320 Atomic orbital electron populations 1.69644 1.05016 1.25943 1.56828 1.24704 0.95380 0.97511 1.02655 0.86366 0.78614 0.83858 0.77900 1.21319 1.21775 1.21219 1.19119 0.90879 0.83783 1.43628 0.91088 1.42488 1.05864 0.99480 1.88170 1.20002 0.94037 0.86041 0.91833 0.92483 1.21623 0.98941 0.97501 0.82353 1.45888 1.50381 1.21586 1.18070 1.17751 0.79030 0.84765 0.84083 1.90780 1.56253 1.22059 1.71688 1.21183 1.03670 0.97652 0.98026 1.22151 0.93351 0.93632 0.92995 1.18798 1.01399 0.96825 0.95375 1.21158 0.98256 0.94627 0.95377 1.20944 0.98517 1.00134 0.95044 1.20980 0.96382 0.93294 0.99951 1.20790 1.00827 0.97421 0.93486 1.18658 0.93821 0.88583 0.94398 1.67530 1.24297 1.18453 1.12197 1.19166 0.87069 0.87632 0.86222 1.84722 1.52027 1.15660 1.74205 1.23058 1.06029 0.95393 0.95470 1.22914 0.96685 1.03494 0.96872 1.22849 0.93505 1.01841 1.03020 0.93326 0.77896 0.91395 0.91585 0.75553 0.82749 0.84427 0.85205 0.85131 0.84560 0.73608 0.89581 0.86352 0.91268 0.91015 0.87956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -25.42 13.06 55.49 0.72 -24.70 16 2 C -0.01 -0.14 5.50 -17.43 -0.10 -0.24 16 3 Si 0.90 20.58 29.55 -169.99 -5.02 15.55 16 4 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.24 -5.79 8.15 -15.06 -0.12 -5.92 16 8 H 0.07 1.67 6.91 -52.49 -0.36 1.31 16 9 N -0.72 -15.25 3.08 -53.42 -0.16 -15.42 16 10 C 0.19 3.34 2.86 -67.93 -0.19 3.15 16 11 H 0.06 1.00 8.08 -51.93 -0.42 0.58 16 12 C 0.12 1.94 5.22 -4.04 -0.02 1.92 16 13 N -0.71 -11.23 5.34 -61.34 -0.33 -11.56 16 14 C 0.56 9.28 7.77 -12.46 -0.10 9.19 16 15 O -0.53 -10.03 15.14 -16.67 -0.25 -10.28 16 16 C -0.20 -2.99 5.90 -104.71 -0.62 -3.60 16 17 C 0.00 0.06 9.38 -38.46 -0.36 -0.30 16 18 C -0.12 -1.56 5.74 -106.80 -0.61 -2.17 16 19 C -0.08 -0.80 9.77 -39.46 -0.39 -1.18 16 20 C -0.13 -1.14 9.96 -39.93 -0.40 -1.54 16 21 C -0.09 -0.74 9.94 -39.93 -0.40 -1.14 16 22 C -0.11 -1.14 9.97 -39.47 -0.39 -1.53 16 23 C 0.17 2.25 6.61 -84.78 -0.56 1.69 16 24 N -0.51 -7.55 10.33 -10.76 -0.11 -7.66 16 25 C 0.39 6.01 7.74 -16.60 -0.13 5.88 16 26 O -0.46 -6.74 11.59 -39.89 -0.46 -7.20 16 27 C -0.18 -2.98 5.71 -90.61 -0.52 -3.50 16 28 C -0.16 -2.97 9.74 -26.69 -0.26 -3.23 16 29 C -0.18 -3.03 9.87 -26.69 -0.26 -3.29 16 30 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 31 H 0.39 9.15 7.80 -40.82 -0.32 8.83 16 32 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 34 H 0.41 6.34 6.21 -40.82 -0.25 6.09 16 35 H 0.16 1.86 6.47 -52.49 -0.34 1.52 16 36 H 0.14 1.26 8.06 -52.49 -0.42 0.84 16 37 H 0.13 0.83 8.06 -52.48 -0.42 0.41 16 38 H 0.13 0.74 8.06 -52.48 -0.42 0.31 16 39 H 0.14 1.26 8.06 -52.49 -0.42 0.84 16 40 H 0.40 4.06 9.06 45.56 0.41 4.47 16 41 H 0.09 1.29 8.11 -51.93 -0.42 0.87 16 42 H 0.12 2.60 6.68 -51.93 -0.35 2.25 16 43 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 44 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 45 H 0.10 1.97 6.22 -51.93 -0.32 1.65 16 LS Contribution 377.88 15.07 5.69 5.69 Total: -1.00 -30.41 377.88 -10.24 -40.64 By element: Atomic # 1 Polarization: 25.62 SS G_CDS: -4.89 Total: 20.73 kcal Atomic # 6 Polarization: -0.39 SS G_CDS: -5.42 Total: -5.81 kcal Atomic # 7 Polarization: -59.44 SS G_CDS: 0.12 Total: -59.32 kcal Atomic # 8 Polarization: -16.77 SS G_CDS: -0.71 Total: -17.48 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -30.41 -10.24 -40.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480037185.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.054 kcal (2) G-P(sol) polarization free energy of solvation -30.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.644 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds