Wall clock time and date at job start Sat Apr 11 2020 06:17:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86796 * 120.00158 * 2 1 4 4 H 1.48504 * 109.47572 * 240.00341 * 3 2 1 5 5 H 1.48501 * 109.47057 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47113 * 120.00394 * 3 2 1 7 7 C 1.38812 * 120.00053 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00572 * 179.97438 * 7 2 1 9 9 N 1.36941 * 120.00040 * 0.02562 * 7 2 1 10 10 C 1.46491 * 120.00215 * 179.97438 * 9 7 2 11 11 H 1.09005 * 109.47484 * 324.99987 * 10 9 7 12 12 C 1.53005 * 109.47382 * 204.99713 * 10 9 7 13 13 N 1.46500 * 109.46812 * 54.99900 * 12 10 9 14 14 C 1.34777 * 119.99779 * 179.97438 * 13 12 10 15 15 O 1.21576 * 120.00139 * 0.02562 * 14 13 12 16 16 C 1.47561 * 119.99675 * 180.02562 * 14 13 12 17 17 C 1.38905 * 120.30216 * 359.97438 * 16 14 13 18 18 C 1.40558 * 118.06968 * 180.02562 * 17 16 14 19 19 C 1.40545 * 121.12208 * 180.02562 * 18 17 16 20 20 C 1.36147 * 119.63583 * 180.02562 * 19 18 17 21 21 C 1.39333 * 120.83022 * 359.70314 * 20 19 18 22 22 C 1.36139 * 121.07902 * 0.58146 * 21 20 19 23 23 C 1.40537 * 119.82617 * 359.44530 * 22 21 20 24 24 N 1.33815 * 120.75031 * 180.27929 * 23 22 21 25 25 C 1.31382 * 121.66226 * 179.97438 * 24 23 22 26 26 O 1.35410 * 119.31688 * 179.97438 * 25 24 23 27 27 C 1.53004 * 109.47173 * 84.99818 * 10 9 7 28 28 C 1.53001 * 117.49770 * 8.74530 * 27 10 9 29 29 C 1.53004 * 117.49799 * 300.08497 * 27 10 9 30 30 H 0.97001 * 120.00190 * 359.97438 * 1 2 3 31 31 H 0.96998 * 119.99454 * 359.97438 * 9 7 2 32 32 H 1.09001 * 109.46723 * 295.00213 * 12 10 9 33 33 H 1.08998 * 109.46996 * 174.99952 * 12 10 9 34 34 H 0.96998 * 120.00122 * 0.02562 * 13 12 10 35 35 H 1.08002 * 120.96333 * 0.04929 * 17 16 14 36 36 H 1.07997 * 120.17712 * 0.02562 * 19 18 17 37 37 H 1.08003 * 119.58388 * 179.97438 * 20 19 18 38 38 H 1.08003 * 119.46100 * 180.28176 * 21 20 19 39 39 H 1.08002 * 120.08956 * 179.72871 * 22 21 20 40 40 H 0.96700 * 114.00458 * 89.99812 * 26 25 24 41 41 H 1.08998 * 115.55190 * 154.41773 * 27 10 9 42 42 H 1.08999 * 117.49999 * 0.02562 * 28 27 10 43 43 H 1.09001 * 117.49321 * 145.01834 * 28 27 10 44 44 H 1.08992 * 117.49887 * 214.97759 * 29 27 10 45 45 H 1.09002 * 117.49737 * 359.97438 * 29 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1039 1.6963 1.2124 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0016 10 6 2.0579 -3.6568 -0.0027 11 1 2.9687 -3.5501 -0.5921 12 6 1.1807 -4.7516 -0.6133 13 7 0.7341 -4.3338 -1.9445 14 6 -0.0549 -5.1454 -2.6761 15 8 -0.3964 -6.2240 -2.2311 16 6 -0.5043 -4.7247 -4.0172 17 6 -0.1184 -3.4934 -4.5314 18 6 -0.5740 -3.1399 -5.8133 19 6 -0.2222 -1.9101 -6.3957 20 6 -0.6810 -1.5983 -7.6390 21 6 -1.4905 -2.4859 -8.3448 22 6 -1.8551 -3.6829 -7.8086 23 6 -1.4026 -4.0418 -6.5274 24 7 -1.7451 -5.2161 -5.9849 25 6 -1.3319 -5.5700 -4.7890 26 8 -1.7079 -6.7695 -4.2856 27 6 2.4219 -4.0369 1.4340 28 6 1.8133 -3.2008 2.5616 29 6 3.2995 -3.0622 2.2219 30 1 -0.4850 0.8400 0.0004 31 1 0.3555 -2.3880 -0.0016 32 1 0.3132 -4.9200 0.0248 33 1 1.7557 -5.6740 -0.6958 34 1 1.0068 -3.4733 -2.2997 35 1 0.5137 -2.8273 -3.9630 36 1 0.4086 -1.2163 -5.8598 37 1 -0.4104 -0.6528 -8.0856 38 1 -1.8383 -2.2178 -9.3316 39 1 -2.4868 -4.3569 -8.3681 40 1 -1.1017 -7.4925 -4.4974 41 1 2.5631 -5.1020 1.6171 42 1 1.1534 -2.3803 2.2800 43 1 1.5545 -3.7160 3.4867 44 1 4.0177 -3.4861 2.9236 45 1 3.6179 -2.1504 1.7165 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001480037185.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:50 Heat of formation + Delta-G solvation = 3.869838 kcal Electronic energy + Delta-G solvation = -29118.667768 eV Core-core repulsion = 25101.923233 eV Total energy + Delta-G solvation = -4016.744536 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.19398 -40.59640 -39.37455 -38.84732 -36.87416 -35.90991 -35.11678 -34.64621 -32.64387 -31.50309 -30.76358 -29.62554 -26.14091 -25.48193 -24.85163 -23.97914 -23.11830 -22.94453 -21.86313 -20.70095 -20.11478 -19.48276 -19.08489 -18.69038 -17.60453 -16.92650 -16.90180 -16.63776 -16.34858 -16.14366 -15.82069 -15.68930 -15.35579 -15.21708 -15.04152 -14.76817 -14.47326 -14.39563 -14.25510 -13.67992 -13.00278 -12.94093 -12.82025 -12.68570 -12.60924 -12.58926 -12.44105 -12.41224 -12.14133 -11.95565 -11.69279 -11.57417 -11.30135 -11.01186 -10.87310 -10.62499 -10.50839 -10.10947 -9.74272 -9.30499 -8.98228 -7.86091 -5.14264 -0.90075 -0.53007 0.79178 1.42526 1.51113 1.53872 1.58072 2.05305 2.17995 2.50528 2.60264 2.96794 3.14715 3.35973 3.45762 3.48655 3.54160 3.73732 3.88828 3.98291 4.04455 4.18246 4.28084 4.30131 4.33262 4.35273 4.51478 4.54909 4.60422 4.62125 4.68710 4.88463 4.94936 4.98348 5.01949 5.19895 5.25248 5.27978 5.35558 5.41837 5.45338 5.52022 5.68665 5.69656 5.81520 6.32999 6.44664 6.53999 6.74109 7.14355 7.41867 8.12146 8.37860 9.35813 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.010110 B = 0.003592 C = 0.002760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2768.838991 B = 7794.011293 C =10143.151129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.964 5.964 2 C -0.062 4.062 3 Si 0.955 3.045 4 H -0.276 1.276 5 H -0.306 1.306 6 H -0.287 1.287 7 C -0.220 4.220 8 H 0.078 0.922 9 N -0.721 5.721 10 C 0.193 3.807 11 H 0.065 0.935 12 C 0.128 3.872 13 N -0.704 5.704 14 C 0.560 3.440 15 O -0.558 6.558 16 C -0.219 4.219 17 C 0.012 3.988 18 C -0.135 4.135 19 C -0.089 4.089 20 C -0.118 4.118 21 C -0.068 4.068 22 C -0.123 4.123 23 C 0.145 3.855 24 N -0.519 5.519 25 C 0.379 3.621 26 O -0.474 6.474 27 C -0.168 4.168 28 C -0.175 4.175 29 C -0.169 4.169 30 H 0.247 0.753 31 H 0.373 0.627 32 H 0.052 0.948 33 H 0.085 0.915 34 H 0.409 0.591 35 H 0.163 0.837 36 H 0.150 0.850 37 H 0.163 0.837 38 H 0.170 0.830 39 H 0.147 0.853 40 H 0.418 0.582 41 H 0.115 0.885 42 H 0.077 0.923 43 H 0.089 0.911 44 H 0.100 0.900 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.098 -6.393 -15.037 16.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.615 5.615 2 C -0.255 4.255 3 Si 0.786 3.214 4 H -0.202 1.202 5 H -0.233 1.233 6 H -0.214 1.214 7 C -0.351 4.351 8 H 0.095 0.905 9 N -0.361 5.361 10 C 0.084 3.916 11 H 0.082 0.918 12 C 0.004 3.996 13 N -0.355 5.355 14 C 0.347 3.653 15 O -0.438 6.438 16 C -0.226 4.226 17 C -0.014 4.014 18 C -0.137 4.137 19 C -0.107 4.107 20 C -0.135 4.135 21 C -0.087 4.087 22 C -0.141 4.141 23 C 0.024 3.976 24 N -0.239 5.239 25 C 0.185 3.815 26 O -0.284 6.284 27 C -0.189 4.189 28 C -0.212 4.212 29 C -0.206 4.206 30 H 0.056 0.944 31 H 0.206 0.794 32 H 0.070 0.930 33 H 0.103 0.897 34 H 0.246 0.754 35 H 0.180 0.820 36 H 0.168 0.832 37 H 0.181 0.819 38 H 0.187 0.813 39 H 0.165 0.835 40 H 0.280 0.720 41 H 0.133 0.867 42 H 0.095 0.905 43 H 0.107 0.893 44 H 0.119 0.881 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 2.021 -7.288 -14.993 16.792 hybrid contribution 0.685 1.569 0.806 1.893 sum 2.706 -5.719 -14.187 15.534 Atomic orbital electron populations 1.69793 1.06337 1.25594 1.59729 1.25268 0.95863 1.00090 1.04278 0.85497 0.77257 0.80656 0.78015 1.20184 1.23254 1.21359 1.19384 0.91120 0.84462 1.40167 0.90468 1.42545 1.05257 1.00309 1.87986 1.20140 0.93994 0.84740 0.92749 0.91759 1.21530 0.98223 0.97688 0.82141 1.45835 1.50278 1.21538 1.17883 1.17965 0.78474 0.84309 0.84556 1.90750 1.57356 1.23217 1.72496 1.21018 1.05325 0.98745 0.97516 1.22279 0.92779 0.92955 0.93388 1.18993 1.01695 0.97857 0.95205 1.21404 0.98943 0.93957 0.96444 1.21411 0.96881 1.01176 0.94063 1.21454 0.94399 0.91764 1.01094 1.21050 1.01587 0.98812 0.92672 1.19132 0.94415 0.88405 0.95629 1.67539 1.24749 1.19504 1.12133 1.19247 0.87761 0.87862 0.86658 1.84670 1.52907 1.16232 1.74553 1.23061 1.04938 0.96808 0.94079 1.22771 0.96857 1.03142 0.98471 1.22839 0.93274 1.01171 1.03290 0.94448 0.79437 0.92999 0.89653 0.75373 0.81985 0.83226 0.81894 0.81284 0.83496 0.71988 0.86663 0.90455 0.89304 0.88133 0.90210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -54.24 13.06 21.65 0.28 -53.96 16 2 C -0.06 -3.20 5.50 84.86 0.47 -2.74 16 3 Si 0.95 42.56 29.55 68.60 2.03 44.59 16 4 H -0.28 -11.66 7.11 99.48 0.71 -10.95 16 5 H -0.31 -14.23 7.11 99.48 0.71 -13.52 16 6 H -0.29 -12.68 7.11 99.48 0.71 -11.97 16 7 C -0.22 -10.43 8.15 84.03 0.69 -9.74 16 8 H 0.08 3.55 6.91 -2.91 -0.02 3.53 16 9 N -0.72 -30.74 3.08 -322.93 -0.99 -31.74 16 10 C 0.19 6.53 2.86 45.00 0.13 6.66 16 11 H 0.06 2.13 8.08 -2.38 -0.02 2.11 16 12 C 0.13 4.07 5.22 86.38 0.45 4.52 16 13 N -0.70 -22.48 5.34 -466.25 -2.49 -24.97 16 14 C 0.56 19.09 7.77 86.70 0.67 19.76 16 15 O -0.56 -21.65 15.14 17.05 0.26 -21.40 16 16 C -0.22 -6.82 5.90 -19.92 -0.12 -6.94 16 17 C 0.01 0.32 9.38 23.00 0.22 0.54 16 18 C -0.14 -3.40 5.74 -21.28 -0.12 -3.53 16 19 C -0.09 -1.70 9.77 22.35 0.22 -1.49 16 20 C -0.12 -1.66 9.96 22.05 0.22 -1.44 16 21 C -0.07 -0.91 9.94 22.04 0.22 -0.69 16 22 C -0.12 -2.40 9.97 22.34 0.22 -2.18 16 23 C 0.15 3.87 6.61 40.28 0.27 4.13 16 24 N -0.52 -15.86 10.33 -301.40 -3.11 -18.97 16 25 C 0.38 12.03 7.74 85.50 0.66 12.70 16 26 O -0.47 -14.59 11.59 -66.04 -0.77 -15.35 16 27 C -0.17 -5.28 5.71 -10.79 -0.06 -5.34 16 28 C -0.18 -6.24 9.74 30.62 0.30 -5.94 16 29 C -0.17 -5.49 9.87 30.62 0.30 -5.19 16 30 H 0.25 13.88 8.31 -92.71 -0.77 13.11 16 31 H 0.37 18.10 7.80 -92.71 -0.72 17.38 16 32 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 34 H 0.41 12.79 6.21 -92.71 -0.58 12.21 16 35 H 0.16 3.95 6.47 -2.91 -0.02 3.93 16 36 H 0.15 2.44 8.06 -2.91 -0.02 2.42 16 37 H 0.16 1.26 8.06 -2.91 -0.02 1.24 16 38 H 0.17 1.01 8.06 -2.91 -0.02 0.99 16 39 H 0.15 2.47 8.06 -2.91 -0.02 2.45 16 40 H 0.42 9.01 9.06 -74.06 -0.67 8.34 16 41 H 0.12 3.04 8.11 -2.39 -0.02 3.02 16 42 H 0.08 3.46 6.68 -2.39 -0.02 3.44 16 43 H 0.09 2.78 8.14 -2.39 -0.02 2.77 16 44 H 0.10 2.71 8.14 -2.39 -0.02 2.69 16 45 H 0.08 2.97 6.22 -2.39 -0.01 2.96 16 Total: -1.00 -67.39 377.88 -0.97 -68.36 By element: Atomic # 1 Polarization: 51.23 SS G_CDS: -0.90 Total: 50.34 kcal Atomic # 6 Polarization: -1.62 SS G_CDS: 4.73 Total: 3.10 kcal Atomic # 7 Polarization: -123.32 SS G_CDS: -6.31 Total: -129.64 kcal Atomic # 8 Polarization: -36.24 SS G_CDS: -0.51 Total: -36.75 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 2.03 Total: 44.59 kcal Total: -67.39 -0.97 -68.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480037185.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.227 kcal (2) G-P(sol) polarization free energy of solvation -67.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.357 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds