Wall clock time and date at job start Sat Apr 11 2020 06:17:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86798 * 120.00395 * 2 1 4 4 H 1.48499 * 109.47305 * 239.99919 * 3 2 1 5 5 H 1.48499 * 109.46741 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47160 * 119.99579 * 3 2 1 7 7 C 1.38814 * 119.99708 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99768 * 180.02562 * 7 2 1 9 9 N 1.36942 * 120.00288 * 0.02562 * 7 2 1 10 10 C 1.46497 * 119.99840 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.46633 * 179.97438 * 10 9 7 12 12 H 1.08991 * 110.91901 * 51.10058 * 11 10 9 13 13 C 1.55159 * 111.00207 * 174.99859 * 11 10 9 14 14 C 1.54331 * 102.94270 * 153.57489 * 13 11 10 15 15 N 1.47025 * 107.26761 * 337.80694 * 14 13 11 16 16 C 1.34777 * 125.64411 * 178.90480 * 15 14 13 17 17 O 1.21585 * 119.99708 * 174.79720 * 16 15 14 18 18 C 1.47588 * 120.00261 * 355.06973 * 16 15 14 19 19 C 1.39812 * 120.00141 * 7.41723 * 18 16 15 20 20 C 1.36580 * 120.00368 * 179.71346 * 19 18 16 21 21 C 1.39811 * 119.99592 * 0.58486 * 20 19 18 22 22 C 1.47585 * 119.99588 * 179.69517 * 21 20 19 23 23 C 1.35943 * 126.60314 * 359.68799 * 22 21 20 24 24 N 1.34027 * 107.49724 * 179.87623 * 23 22 21 25 25 C 1.30418 * 108.93017 * 0.39459 * 24 23 22 26 26 O 1.33941 * 109.06715 * 359.75606 * 25 24 23 27 27 C 1.39802 * 120.00348 * 359.67133 * 21 20 19 28 28 C 1.36586 * 120.00139 * 0.04209 * 27 21 20 29 29 C 1.47418 * 108.70451 * 359.16798 * 15 14 13 30 30 H 0.96995 * 120.00032 * 359.97438 * 1 2 3 31 31 H 0.96994 * 119.99639 * 359.97438 * 9 7 2 32 32 H 1.08996 * 109.47529 * 59.99980 * 10 9 7 33 33 H 1.09004 * 109.47303 * 299.99401 * 10 9 7 34 34 H 1.08999 * 110.72414 * 35.21398 * 13 11 10 35 35 H 1.08993 * 110.87483 * 272.00920 * 13 11 10 36 36 H 1.09001 * 109.88397 * 218.39308 * 14 13 11 37 37 H 1.08997 * 110.01266 * 97.29562 * 14 13 11 38 38 H 1.08006 * 119.99756 * 359.97438 * 19 18 16 39 39 H 1.07996 * 120.00381 * 180.30022 * 20 19 18 40 40 H 1.07996 * 126.25003 * 359.97438 * 23 22 21 41 41 H 1.08006 * 125.46884 * 179.71483 * 25 24 23 42 42 H 1.07995 * 120.00354 * 180.02562 * 27 21 20 43 43 H 1.07996 * 120.00523 * 179.97438 * 28 27 21 44 44 H 1.09005 * 110.36616 * 142.74118 * 29 15 14 45 45 H 1.09004 * 110.36827 * 265.06290 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3882 0.0005 10 6 2.0580 -3.6568 0.0017 11 6 1.0637 -4.8197 0.0021 12 1 0.3252 -4.7005 -0.7906 13 6 1.7991 -6.1802 -0.1230 14 6 0.8243 -7.1640 0.5580 15 7 -0.0337 -6.3769 1.4558 16 6 -1.0315 -6.8668 2.2180 17 8 -1.6162 -6.1380 2.9959 18 6 -1.4103 -8.2894 2.1127 19 6 -0.6382 -9.1632 1.3413 20 6 -0.9853 -10.4809 1.2486 21 6 -2.1198 -10.9534 1.9153 22 6 -2.4987 -12.3758 1.8097 23 6 -1.8494 -13.3372 1.1009 24 7 -2.5176 -14.4860 1.2741 25 6 -3.5451 -14.2656 2.0465 26 8 -3.5615 -12.9722 2.3943 27 6 -2.8949 -10.0786 2.6823 28 6 -2.5445 -8.7621 2.7798 29 6 0.3738 -4.9622 1.3793 30 1 -0.4850 0.8400 0.0004 31 1 0.3555 -2.3881 0.0005 32 1 2.6840 -3.7142 0.8921 33 1 2.6853 -3.7150 -0.8879 34 1 2.7520 -6.1536 0.4055 35 1 1.9475 -6.4467 -1.1694 36 1 1.3838 -7.9020 1.1328 37 1 0.2139 -7.6646 -0.1935 38 1 0.2352 -8.7970 0.8221 39 1 -0.3862 -11.1568 0.6567 40 1 -0.9571 -13.2005 0.5081 41 1 -4.2672 -15.0068 2.3556 42 1 -3.7710 -10.4437 3.1976 43 1 -3.1435 -8.0862 3.3720 44 1 -0.4994 -4.3123 1.4357 45 1 1.0760 -4.7259 2.1789 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001480655001.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:53 Heat of formation + Delta-G solvation = 57.434738 kcal Electronic energy + Delta-G solvation = -27911.903670 eV Core-core repulsion = 23897.481883 eV Total energy + Delta-G solvation = -4014.421787 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.76719 -40.76667 -38.96982 -37.59523 -35.28639 -34.83345 -33.24745 -32.34106 -31.53870 -30.51764 -29.43597 -28.65816 -25.92924 -24.71322 -23.84987 -23.44251 -22.44647 -21.92439 -21.54522 -20.29165 -19.97025 -18.45896 -17.66988 -17.06834 -16.98758 -16.67204 -16.32487 -15.97491 -15.23946 -14.88184 -14.71422 -14.48685 -14.40439 -14.03739 -13.85360 -13.80033 -13.42282 -13.25993 -13.21911 -12.96936 -12.58902 -12.55030 -12.12915 -11.90321 -11.85195 -11.45321 -11.09260 -11.03407 -10.86921 -10.65311 -10.59195 -10.48838 -10.31064 -10.06428 -9.96742 -9.68806 -9.53367 -8.88518 -8.71781 -8.51548 -6.94215 -5.76451 -3.06134 -0.08902 0.97697 1.28165 2.15490 2.19168 2.75342 2.88023 3.44428 3.48678 3.50048 3.54350 3.71321 4.07168 4.26703 4.32212 4.43860 4.50109 4.53791 4.58087 4.76840 4.84843 4.89325 4.91408 5.11721 5.16676 5.26202 5.32162 5.34173 5.52178 5.55417 5.57791 5.76404 5.81296 5.83095 5.87424 5.91396 5.95908 5.96407 6.06314 6.18906 6.32275 6.34513 6.41108 6.65781 6.78162 7.15945 7.44783 7.68717 8.08118 8.41705 9.52921 10.09477 10.43615 11.46108 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.032534 B = 0.001787 C = 0.001720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.442669 B =15666.991867 C =16279.216462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.012 4.012 3 Si 0.908 3.092 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.244 4.244 8 H 0.070 0.930 9 N -0.733 5.733 10 C 0.165 3.835 11 C -0.105 4.105 12 H 0.086 0.914 13 C -0.128 4.128 14 C 0.088 3.912 15 N -0.610 5.610 16 C 0.566 3.434 17 O -0.531 6.531 18 C -0.114 4.114 19 C -0.121 4.121 20 C -0.102 4.102 21 C 0.000 4.000 22 C -0.004 4.004 23 C -0.018 4.018 24 N -0.487 5.487 25 C 0.175 3.825 26 O -0.197 6.197 27 C -0.107 4.107 28 C -0.057 4.057 29 C 0.116 3.884 30 H 0.256 0.744 31 H 0.384 0.616 32 H 0.022 0.978 33 H 0.025 0.975 34 H 0.081 0.919 35 H 0.085 0.915 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.171 0.829 39 H 0.135 0.865 40 H 0.188 0.812 41 H 0.253 0.747 42 H 0.134 0.866 43 H 0.143 0.857 44 H 0.085 0.915 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.610 -30.195 2.195 30.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.208 4.208 3 Si 0.739 3.261 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.375 4.375 8 H 0.088 0.912 9 N -0.377 5.377 10 C 0.037 3.963 11 C -0.125 4.125 12 H 0.105 0.895 13 C -0.167 4.167 14 C -0.034 4.034 15 N -0.344 5.344 16 C 0.355 3.645 17 O -0.409 6.409 18 C -0.117 4.117 19 C -0.138 4.138 20 C -0.120 4.120 21 C -0.001 4.001 22 C -0.057 4.057 23 C -0.158 4.158 24 N -0.215 5.215 25 C -0.050 4.050 26 O -0.083 6.083 27 C -0.125 4.125 28 C -0.076 4.076 29 C -0.006 4.006 30 H 0.066 0.934 31 H 0.218 0.782 32 H 0.040 0.960 33 H 0.043 0.957 34 H 0.099 0.901 35 H 0.103 0.897 36 H 0.095 0.905 37 H 0.096 0.904 38 H 0.187 0.813 39 H 0.153 0.847 40 H 0.205 0.795 41 H 0.268 0.732 42 H 0.152 0.848 43 H 0.160 0.840 44 H 0.103 0.897 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -3.755 -30.263 2.450 30.593 hybrid contribution -0.149 1.342 0.285 1.380 sum -3.903 -28.920 2.734 29.310 Atomic orbital electron populations 1.69648 1.05123 1.25853 1.57373 1.24754 0.95515 0.97740 1.02837 0.86260 0.78513 0.83522 0.77820 1.21274 1.21690 1.21248 1.19164 0.90991 0.84130 1.43180 0.91193 1.42357 1.05884 0.99917 1.89578 1.20584 0.92690 0.84765 0.98253 1.22562 0.98511 0.94776 0.96639 0.89547 1.22735 0.98283 0.94299 1.01342 1.22574 0.92829 0.94968 0.93058 1.48441 1.32708 1.10267 1.42939 1.17852 0.79213 0.87053 0.80344 1.90825 1.53428 1.59826 1.36800 1.20142 0.97518 0.93642 1.00371 1.22523 1.01044 0.92959 0.97298 1.20780 0.95646 0.96022 0.99558 1.17857 0.96196 0.86873 0.99187 1.21502 0.89533 0.94385 1.00255 1.23391 1.02425 0.87239 1.02748 1.70358 1.06374 1.28227 1.16504 1.28210 0.98623 0.82249 0.95920 1.84491 1.41835 1.23775 1.58238 1.20975 0.99851 0.93014 0.98694 1.21008 0.94956 0.95259 0.96370 1.22362 1.00351 0.80168 0.97693 0.93401 0.78209 0.95991 0.95722 0.90055 0.89658 0.90469 0.90351 0.81271 0.84708 0.79463 0.73173 0.84804 0.83969 0.89671 0.90815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.27 13.06 55.49 0.72 -27.54 16 2 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 3 Si 0.91 22.37 29.55 -169.99 -5.02 17.35 16 4 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 5 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 6 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 7 C -0.24 -6.74 9.99 -15.06 -0.15 -6.89 16 8 H 0.07 1.86 7.83 -52.48 -0.41 1.45 16 9 N -0.73 -18.10 5.55 -59.91 -0.33 -18.43 16 10 C 0.17 3.08 5.72 -4.04 -0.02 3.06 16 11 C -0.11 -1.54 3.03 -88.59 -0.27 -1.81 16 12 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 13 C -0.13 -1.27 6.42 -24.89 -0.16 -1.43 16 14 C 0.09 0.80 4.87 -3.06 -0.01 0.79 16 15 N -0.61 -8.19 3.33 -176.97 -0.59 -8.77 16 16 C 0.57 8.39 7.80 -12.45 -0.10 8.30 16 17 O -0.53 -10.00 16.66 5.29 0.09 -9.92 16 18 C -0.11 -1.30 5.88 -104.90 -0.62 -1.92 16 19 C -0.12 -1.02 8.53 -39.59 -0.34 -1.35 16 20 C -0.10 -0.74 9.51 -39.59 -0.38 -1.12 16 21 C 0.00 0.00 5.88 -104.91 -0.62 -0.62 16 22 C 0.00 -0.03 7.06 -36.59 -0.26 -0.29 16 23 C -0.02 -0.14 11.29 -17.42 -0.20 -0.34 16 24 N -0.49 -4.17 11.27 -14.67 -0.17 -4.34 16 25 C 0.17 1.07 13.21 52.16 0.69 1.76 16 26 O -0.20 -1.58 10.58 4.24 0.04 -1.54 16 27 C -0.11 -0.97 9.67 -39.59 -0.38 -1.36 16 28 C -0.06 -0.61 9.53 -39.59 -0.38 -0.99 16 29 C 0.12 1.84 6.30 -2.65 -0.02 1.82 16 30 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 31 H 0.38 10.08 7.67 -40.82 -0.31 9.76 16 32 H 0.02 0.42 7.96 -51.93 -0.41 0.00 16 33 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.08 0.76 8.04 -51.93 -0.42 0.34 16 35 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.08 0.54 6.80 -51.93 -0.35 0.18 16 37 H 0.08 0.58 6.64 -51.93 -0.34 0.24 16 38 H 0.17 1.10 2.73 -59.09 -0.16 0.94 16 39 H 0.14 0.58 7.02 -52.49 -0.37 0.21 16 40 H 0.19 0.96 7.29 -52.49 -0.38 0.58 16 41 H 0.25 0.26 8.06 -52.48 -0.42 -0.17 16 42 H 0.13 1.02 7.93 -52.49 -0.42 0.61 16 43 H 0.14 1.55 7.66 -52.49 -0.40 1.15 16 44 H 0.08 1.59 8.09 -51.93 -0.42 1.17 16 45 H 0.07 1.22 7.90 -51.93 -0.41 0.81 16 LS Contribution 375.87 15.07 5.66 5.66 Total: -1.00 -36.00 375.87 -8.53 -44.53 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: -5.64 Total: 5.84 kcal Atomic # 6 Polarization: 0.46 SS G_CDS: -3.30 Total: -2.84 kcal Atomic # 7 Polarization: -58.73 SS G_CDS: -0.36 Total: -59.09 kcal Atomic # 8 Polarization: -11.58 SS G_CDS: 0.13 Total: -11.45 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -36.00 -8.53 -44.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480655001.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.961 kcal (2) G-P(sol) polarization free energy of solvation -35.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.527 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds