Wall clock time and date at job start Sat Apr 11 2020 06:17:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86798 * 120.00395 * 2 1 4 4 H 1.48499 * 109.47305 * 239.99919 * 3 2 1 5 5 H 1.48499 * 109.46741 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47160 * 119.99579 * 3 2 1 7 7 C 1.38814 * 119.99708 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99768 * 180.02562 * 7 2 1 9 9 N 1.36942 * 120.00288 * 0.02562 * 7 2 1 10 10 C 1.46497 * 119.99840 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.46633 * 179.97438 * 10 9 7 12 12 H 1.08991 * 110.91901 * 51.10058 * 11 10 9 13 13 C 1.55159 * 111.00207 * 174.99859 * 11 10 9 14 14 C 1.54331 * 102.94270 * 153.57489 * 13 11 10 15 15 N 1.47025 * 107.26761 * 337.80694 * 14 13 11 16 16 C 1.34777 * 125.64411 * 178.90480 * 15 14 13 17 17 O 1.21585 * 119.99708 * 174.79720 * 16 15 14 18 18 C 1.47588 * 120.00261 * 355.06973 * 16 15 14 19 19 C 1.39812 * 120.00141 * 7.41723 * 18 16 15 20 20 C 1.36580 * 120.00368 * 179.71346 * 19 18 16 21 21 C 1.39811 * 119.99592 * 0.58486 * 20 19 18 22 22 C 1.47585 * 119.99588 * 179.69517 * 21 20 19 23 23 C 1.35943 * 126.60314 * 359.68799 * 22 21 20 24 24 N 1.34027 * 107.49724 * 179.87623 * 23 22 21 25 25 C 1.30418 * 108.93017 * 0.39459 * 24 23 22 26 26 O 1.33941 * 109.06715 * 359.75606 * 25 24 23 27 27 C 1.39802 * 120.00348 * 359.67133 * 21 20 19 28 28 C 1.36586 * 120.00139 * 0.04209 * 27 21 20 29 29 C 1.47418 * 108.70451 * 359.16798 * 15 14 13 30 30 H 0.96995 * 120.00032 * 359.97438 * 1 2 3 31 31 H 0.96994 * 119.99639 * 359.97438 * 9 7 2 32 32 H 1.08996 * 109.47529 * 59.99980 * 10 9 7 33 33 H 1.09004 * 109.47303 * 299.99401 * 10 9 7 34 34 H 1.08999 * 110.72414 * 35.21398 * 13 11 10 35 35 H 1.08993 * 110.87483 * 272.00920 * 13 11 10 36 36 H 1.09001 * 109.88397 * 218.39308 * 14 13 11 37 37 H 1.08997 * 110.01266 * 97.29562 * 14 13 11 38 38 H 1.08006 * 119.99756 * 359.97438 * 19 18 16 39 39 H 1.07996 * 120.00381 * 180.30022 * 20 19 18 40 40 H 1.07996 * 126.25003 * 359.97438 * 23 22 21 41 41 H 1.08006 * 125.46884 * 179.71483 * 25 24 23 42 42 H 1.07995 * 120.00354 * 180.02562 * 27 21 20 43 43 H 1.07996 * 120.00523 * 179.97438 * 28 27 21 44 44 H 1.09005 * 110.36616 * 142.74118 * 29 15 14 45 45 H 1.09004 * 110.36827 * 265.06290 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3882 0.0005 10 6 2.0580 -3.6568 0.0017 11 6 1.0637 -4.8197 0.0021 12 1 0.3252 -4.7005 -0.7906 13 6 1.7991 -6.1802 -0.1230 14 6 0.8243 -7.1640 0.5580 15 7 -0.0337 -6.3769 1.4558 16 6 -1.0315 -6.8668 2.2180 17 8 -1.6162 -6.1380 2.9959 18 6 -1.4103 -8.2894 2.1127 19 6 -0.6382 -9.1632 1.3413 20 6 -0.9853 -10.4809 1.2486 21 6 -2.1198 -10.9534 1.9153 22 6 -2.4987 -12.3758 1.8097 23 6 -1.8494 -13.3372 1.1009 24 7 -2.5176 -14.4860 1.2741 25 6 -3.5451 -14.2656 2.0465 26 8 -3.5615 -12.9722 2.3943 27 6 -2.8949 -10.0786 2.6823 28 6 -2.5445 -8.7621 2.7798 29 6 0.3738 -4.9622 1.3793 30 1 -0.4850 0.8400 0.0004 31 1 0.3555 -2.3881 0.0005 32 1 2.6840 -3.7142 0.8921 33 1 2.6853 -3.7150 -0.8879 34 1 2.7520 -6.1536 0.4055 35 1 1.9475 -6.4467 -1.1694 36 1 1.3838 -7.9020 1.1328 37 1 0.2139 -7.6646 -0.1935 38 1 0.2352 -8.7970 0.8221 39 1 -0.3862 -11.1568 0.6567 40 1 -0.9571 -13.2005 0.5081 41 1 -4.2672 -15.0068 2.3556 42 1 -3.7710 -10.4437 3.1976 43 1 -3.1435 -8.0862 3.3720 44 1 -0.4994 -4.3123 1.4357 45 1 1.0760 -4.7259 2.1789 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001480655001.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:52 Heat of formation + Delta-G solvation = 31.055899 kcal Electronic energy + Delta-G solvation = -27913.047543 eV Core-core repulsion = 23897.481883 eV Total energy + Delta-G solvation = -4015.565660 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -44.29029 -41.72636 -39.81891 -38.76519 -36.52210 -35.82776 -34.36226 -33.51163 -32.45206 -31.93848 -30.26274 -29.70579 -27.29532 -25.92733 -24.57959 -24.50012 -23.60975 -22.71068 -22.23899 -21.43822 -21.02408 -19.19831 -18.98899 -18.42609 -17.61309 -17.54292 -17.22262 -16.96990 -16.57544 -15.98810 -15.87402 -15.33416 -15.23115 -15.20171 -14.96034 -14.73656 -14.59441 -14.42811 -14.20400 -13.99941 -13.74385 -13.58577 -13.30998 -13.07125 -12.81311 -12.70382 -12.45894 -12.36093 -12.13877 -12.00499 -11.76631 -11.63879 -11.60035 -11.39690 -11.12343 -10.99323 -10.91543 -10.20499 -9.78239 -9.16208 -8.99279 -7.94381 -5.23545 -0.77044 0.31853 0.65388 1.47244 1.50754 1.56787 1.59499 1.68354 1.81715 1.89986 2.56671 2.77123 3.27291 3.36335 3.39816 3.50536 3.56553 3.67286 3.83367 3.87565 3.89624 4.01534 4.18371 4.21655 4.25015 4.30206 4.42043 4.50584 4.56930 4.65501 4.74624 4.76510 4.80351 4.85463 4.93885 5.01399 5.06760 5.14374 5.17366 5.26010 5.29890 5.31485 5.34323 5.43390 5.51101 5.68907 6.27297 6.40931 6.65467 6.97760 7.33375 8.10542 8.31305 9.29121 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.032534 B = 0.001787 C = 0.001720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.442669 B =15666.991867 C =16279.216462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.079 4.079 3 Si 0.975 3.025 4 H -0.274 1.274 5 H -0.299 1.299 6 H -0.278 1.278 7 C -0.245 4.245 8 H 0.080 0.920 9 N -0.749 5.749 10 C 0.163 3.837 11 C -0.097 4.097 12 H 0.077 0.923 13 C -0.114 4.114 14 C 0.080 3.920 15 N -0.609 5.609 16 C 0.558 3.442 17 O -0.591 6.591 18 C -0.137 4.137 19 C -0.107 4.107 20 C -0.093 4.093 21 C 0.005 3.995 22 C -0.030 4.030 23 C -0.011 4.011 24 N -0.523 5.523 25 C 0.191 3.809 26 O -0.210 6.210 27 C -0.114 4.114 28 C -0.070 4.070 29 C 0.118 3.882 30 H 0.250 0.750 31 H 0.371 0.629 32 H 0.025 0.975 33 H 0.038 0.962 34 H 0.093 0.907 35 H 0.116 0.884 36 H 0.113 0.887 37 H 0.107 0.893 38 H 0.195 0.805 39 H 0.175 0.825 40 H 0.213 0.787 41 H 0.294 0.706 42 H 0.141 0.859 43 H 0.124 0.876 44 H 0.041 0.959 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.429 -33.832 0.635 33.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.271 4.271 3 Si 0.804 3.196 4 H -0.200 1.200 5 H -0.225 1.225 6 H -0.205 1.205 7 C -0.377 4.377 8 H 0.098 0.902 9 N -0.392 5.392 10 C 0.036 3.964 11 C -0.117 4.117 12 H 0.095 0.905 13 C -0.152 4.152 14 C -0.040 4.040 15 N -0.341 5.341 16 C 0.350 3.650 17 O -0.474 6.474 18 C -0.140 4.140 19 C -0.124 4.124 20 C -0.111 4.111 21 C 0.004 3.996 22 C -0.082 4.082 23 C -0.151 4.151 24 N -0.251 5.251 25 C -0.033 4.033 26 O -0.097 6.097 27 C -0.132 4.132 28 C -0.089 4.089 29 C -0.004 4.004 30 H 0.059 0.941 31 H 0.202 0.798 32 H 0.043 0.957 33 H 0.056 0.944 34 H 0.112 0.888 35 H 0.134 0.866 36 H 0.130 0.870 37 H 0.124 0.876 38 H 0.211 0.789 39 H 0.192 0.808 40 H 0.230 0.770 41 H 0.309 0.691 42 H 0.159 0.841 43 H 0.142 0.858 44 H 0.059 0.941 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.499 -33.961 0.857 34.005 hybrid contribution -0.851 2.262 0.786 2.541 sum -2.351 -31.699 1.642 31.829 Atomic orbital electron populations 1.69828 1.06792 1.26082 1.59611 1.25619 0.96353 1.01345 1.03818 0.85186 0.77129 0.79005 0.78290 1.19978 1.22499 1.20450 1.19648 0.91653 0.85334 1.41048 0.90186 1.42639 1.05582 1.01470 1.89468 1.20789 0.93352 0.83690 0.98541 1.22378 0.97904 0.96272 0.95119 0.90477 1.22768 0.98180 0.90581 1.03655 1.23002 0.92701 0.94974 0.93340 1.48492 1.32865 1.09533 1.43165 1.18513 0.78705 0.88307 0.79510 1.90779 1.55506 1.61589 1.39477 1.19952 0.99059 0.91957 1.03056 1.22721 1.00829 0.92842 0.95989 1.21178 0.95130 0.95927 0.98865 1.18068 0.96190 0.87033 0.98270 1.21515 0.90482 0.94422 1.01820 1.23844 1.02647 0.86690 1.01873 1.70414 1.07702 1.28828 1.18121 1.29257 0.98173 0.82050 0.93795 1.84501 1.42023 1.24637 1.58567 1.21017 1.00504 0.92343 0.99305 1.20942 0.95233 0.95883 0.96891 1.22096 0.98367 0.81543 0.98428 0.94147 0.79755 0.95734 0.94378 0.88831 0.86586 0.86966 0.87577 0.78915 0.80777 0.77033 0.69101 0.84139 0.85752 0.94068 0.92084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.10 13.06 21.65 0.28 -60.81 16 2 C -0.08 -4.63 5.50 84.86 0.47 -4.16 16 3 Si 0.98 46.62 29.55 68.60 2.03 48.65 16 4 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 5 H -0.30 -14.51 7.11 99.48 0.71 -13.80 16 6 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 7 C -0.25 -13.69 9.99 84.03 0.84 -12.85 16 8 H 0.08 4.21 7.83 -2.91 -0.02 4.19 16 9 N -0.75 -37.87 5.55 -343.45 -1.90 -39.77 16 10 C 0.16 5.99 5.72 86.38 0.49 6.48 16 11 C -0.10 -2.78 3.03 -9.48 -0.03 -2.81 16 12 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 13 C -0.11 -1.83 6.42 31.79 0.20 -1.63 16 14 C 0.08 1.17 4.87 86.73 0.42 1.59 16 15 N -0.61 -16.29 3.33 -832.09 -2.77 -19.06 16 16 C 0.56 17.34 7.80 86.71 0.68 18.01 16 17 O -0.59 -24.46 16.66 -3.98 -0.07 -24.53 16 18 C -0.14 -3.12 5.88 -20.05 -0.12 -3.24 16 19 C -0.11 -1.46 8.53 22.26 0.19 -1.27 16 20 C -0.09 -1.00 9.51 22.26 0.21 -0.78 16 21 C 0.01 0.08 5.88 -20.05 -0.12 -0.04 16 22 C -0.03 -0.43 7.06 24.21 0.17 -0.26 16 23 C -0.01 -0.14 11.29 83.82 0.95 0.81 16 24 N -0.52 -7.49 11.27 -315.04 -3.55 -11.04 16 25 C 0.19 1.81 13.21 130.45 1.72 3.53 16 26 O -0.21 -2.95 10.58 -7.76 -0.08 -3.03 16 27 C -0.11 -2.04 9.67 22.26 0.22 -1.82 16 28 C -0.07 -1.59 9.53 22.27 0.21 -1.38 16 29 C 0.12 3.95 6.30 86.78 0.55 4.50 16 30 H 0.25 15.30 8.31 -92.71 -0.77 14.53 16 31 H 0.37 20.44 7.67 -92.71 -0.71 19.73 16 32 H 0.02 0.91 7.96 -2.39 -0.02 0.89 16 33 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.09 1.34 8.04 -2.39 -0.02 1.32 16 35 H 0.12 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.11 0.96 6.80 -2.39 -0.02 0.94 16 37 H 0.11 1.05 6.64 -2.39 -0.02 1.03 16 38 H 0.19 1.55 2.73 -9.12 -0.02 1.53 16 39 H 0.17 0.48 7.02 -2.91 -0.02 0.46 16 40 H 0.21 1.24 7.29 -2.91 -0.02 1.22 16 41 H 0.29 -0.46 8.06 -2.91 -0.02 -0.48 16 42 H 0.14 2.19 7.93 -2.91 -0.02 2.17 16 43 H 0.12 3.12 7.66 -2.91 -0.02 3.10 16 44 H 0.04 1.71 8.09 -2.38 -0.02 1.69 16 45 H 0.06 2.15 7.90 -2.38 -0.02 2.13 16 Total: -1.00 -84.51 375.87 1.31 -83.20 By element: Atomic # 1 Polarization: 21.39 SS G_CDS: 0.31 Total: 21.70 kcal Atomic # 6 Polarization: -2.37 SS G_CDS: 7.06 Total: 4.69 kcal Atomic # 7 Polarization: -122.74 SS G_CDS: -7.94 Total: -130.68 kcal Atomic # 8 Polarization: -27.42 SS G_CDS: -0.15 Total: -27.56 kcal Atomic # 14 Polarization: 46.62 SS G_CDS: 2.03 Total: 48.65 kcal Total: -84.51 1.31 -83.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480655001.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.260 kcal (2) G-P(sol) polarization free energy of solvation -84.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.204 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds