Wall clock time and date at job start Sat Apr 11 2020 06:17:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86798 * 119.99904 * 2 1 4 4 H 1.48501 * 109.47284 * 0.02562 * 3 2 1 5 5 H 1.48499 * 109.47120 * 119.99795 * 3 2 1 6 6 H 1.48492 * 109.47150 * 239.99825 * 3 2 1 7 7 C 1.38812 * 119.99852 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99671 * 180.02562 * 7 2 1 9 9 N 1.36931 * 120.00182 * 0.02562 * 7 2 1 10 10 C 1.46504 * 120.00195 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.47047 * 179.97438 * 10 9 7 12 12 H 1.08994 * 110.89259 * 308.88289 * 11 10 9 13 13 C 1.55160 * 111.00308 * 184.99994 * 11 10 9 14 14 C 1.54322 * 102.94321 * 206.42733 * 13 11 10 15 15 N 1.47022 * 107.27402 * 22.19454 * 14 13 11 16 16 C 1.34771 * 125.65245 * 181.01297 * 15 14 13 17 17 O 1.21592 * 120.00424 * 174.32336 * 16 15 14 18 18 C 1.47596 * 119.99803 * 354.32877 * 16 15 14 19 19 C 1.39819 * 120.00087 * 7.05356 * 18 16 15 20 20 C 1.36577 * 119.99670 * 179.81190 * 19 18 16 21 21 C 1.39807 * 120.00125 * 0.44951 * 20 19 18 22 22 C 1.47584 * 119.99724 * 179.76714 * 21 20 19 23 23 C 1.35939 * 126.59984 * 0.02562 * 22 21 20 24 24 N 1.34032 * 107.50132 * 180.02562 * 23 22 21 25 25 C 1.30426 * 108.92444 * 0.02562 * 24 23 22 26 26 O 1.33942 * 109.06450 * 359.72926 * 25 24 23 27 27 C 1.39804 * 120.00417 * 359.78301 * 21 20 19 28 28 C 1.36587 * 119.99981 * 0.02562 * 27 21 20 29 29 C 1.47424 * 108.69961 * 1.05838 * 15 14 13 30 30 H 0.96994 * 119.99433 * 179.97438 * 1 2 3 31 31 H 0.96999 * 120.00146 * 0.02562 * 9 7 2 32 32 H 1.08992 * 109.46981 * 300.00246 * 10 9 7 33 33 H 1.09003 * 109.46583 * 60.00228 * 10 9 7 34 34 H 1.09003 * 110.71852 * 324.78811 * 13 11 10 35 35 H 1.09002 * 110.71792 * 87.88510 * 13 11 10 36 36 H 1.09008 * 109.88173 * 141.61372 * 14 13 11 37 37 H 1.08996 * 109.88445 * 262.77127 * 14 13 11 38 38 H 1.08002 * 119.99985 * 0.02852 * 19 18 16 39 39 H 1.08002 * 120.00000 * 180.21010 * 20 19 18 40 40 H 1.08007 * 126.25399 * 359.97438 * 23 22 21 41 41 H 1.08003 * 125.46810 * 180.02562 * 25 24 23 42 42 H 1.07995 * 120.00187 * 179.97438 * 27 21 20 43 43 H 1.07999 * 119.99985 * 179.97438 * 28 27 21 44 44 H 1.09000 * 110.36591 * 217.03609 * 29 15 14 45 45 H 1.09005 * 110.36492 * 94.71211 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2852 2.7465 0.0006 5 1 3.1039 1.6964 1.2125 6 1 3.1040 1.6964 -1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0005 11 6 1.0639 -4.8196 0.0012 12 1 0.3258 -4.6995 0.7941 13 6 1.7993 -6.1801 0.1274 14 6 0.8246 -7.1643 -0.5527 15 7 -0.0335 -6.3782 -1.4512 16 6 -1.0302 -6.8690 -2.2142 17 8 -1.7439 -6.1116 -2.8430 18 6 -1.2554 -8.3259 -2.2864 19 6 -0.5346 -9.1868 -1.4532 20 6 -0.7459 -10.5346 -1.5173 21 6 -1.6759 -11.0541 -2.4227 22 6 -1.9004 -12.5110 -2.4955 23 6 -1.2815 -13.4647 -1.7502 24 7 -1.7720 -14.6532 -2.1287 25 6 -2.6576 -14.4658 -3.0676 26 8 -2.7641 -13.1534 -3.3130 27 6 -2.3931 -10.1937 -3.2592 28 6 -2.1848 -8.8455 -3.1924 29 6 0.3776 -4.9642 -1.3801 30 1 -0.4849 -0.8400 -0.0004 31 1 0.3557 -2.3881 -0.0002 32 1 2.6848 -3.7145 -0.8894 33 1 2.6847 -3.7145 0.8906 34 1 2.7522 -6.1538 -0.4012 35 1 1.9480 -6.4423 1.1750 36 1 1.3841 -7.9030 -1.1268 37 1 0.2145 -7.6622 0.2009 38 1 0.1865 -8.7857 -0.7564 39 1 -0.1916 -11.1994 -0.8713 40 1 -0.5310 -13.2957 -0.9922 41 1 -3.2189 -15.2437 -3.5640 42 1 -3.1112 -10.5951 -3.9589 43 1 -2.7385 -8.1808 -3.8390 44 1 -0.4938 -4.3123 -1.4408 45 1 1.0817 -4.7333 -2.1796 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001480655004.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:55 Heat of formation + Delta-G solvation = 57.815364 kcal Electronic energy + Delta-G solvation = -27946.306268 eV Core-core repulsion = 23931.900986 eV Total energy + Delta-G solvation = -4014.405282 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.79294 -40.82188 -39.02484 -37.66292 -35.31156 -35.06951 -33.34600 -32.45685 -31.58745 -30.46814 -29.46874 -28.58657 -25.86745 -24.57515 -23.88139 -23.45278 -22.55453 -22.01481 -21.60080 -20.36132 -20.05806 -18.48891 -17.73965 -17.16006 -17.09342 -16.72503 -16.44613 -15.98872 -15.26638 -15.02532 -14.74151 -14.47260 -14.42418 -14.11371 -13.94212 -13.81145 -13.66519 -13.36753 -13.24927 -13.07795 -12.75847 -12.61989 -12.19333 -11.95153 -11.92719 -11.43012 -11.10283 -10.98135 -10.80971 -10.66559 -10.59276 -10.46451 -10.34873 -10.03690 -9.97126 -9.57158 -9.17250 -8.89784 -8.77812 -8.55736 -7.02277 -6.10263 -3.10876 -0.12556 0.93925 1.24881 2.12823 2.16359 2.70658 2.81178 3.49982 3.51957 3.55733 3.68872 3.73403 4.03475 4.21054 4.27661 4.40328 4.46182 4.49587 4.60948 4.74933 4.77017 4.85021 4.87768 5.07242 5.10643 5.19121 5.28696 5.30554 5.43048 5.51192 5.61251 5.73865 5.74290 5.78665 5.79881 5.83408 5.86966 5.91758 5.93218 6.09558 6.19745 6.25320 6.35219 6.57226 6.68883 7.13435 7.37917 7.79384 8.01931 8.75646 9.21797 10.08232 10.22337 11.38078 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.034792 B = 0.001779 C = 0.001708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.587772 B =15735.885654 C =16393.504278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C -0.044 4.044 3 Si 1.081 2.919 4 H -0.285 1.285 5 H -0.295 1.295 6 H -0.295 1.295 7 C -0.335 4.335 8 H 0.065 0.935 9 N -0.744 5.744 10 C 0.171 3.829 11 C -0.107 4.107 12 H 0.085 0.915 13 C -0.128 4.128 14 C 0.089 3.911 15 N -0.611 5.611 16 C 0.567 3.433 17 O -0.531 6.531 18 C -0.115 4.115 19 C -0.121 4.121 20 C -0.102 4.102 21 C 0.001 3.999 22 C -0.004 4.004 23 C -0.018 4.018 24 N -0.487 5.487 25 C 0.175 3.825 26 O -0.197 6.197 27 C -0.107 4.107 28 C -0.057 4.057 29 C 0.115 3.885 30 H 0.255 0.745 31 H 0.367 0.633 32 H 0.023 0.977 33 H 0.026 0.974 34 H 0.081 0.919 35 H 0.085 0.915 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.171 0.829 39 H 0.135 0.865 40 H 0.188 0.812 41 H 0.253 0.747 42 H 0.134 0.866 43 H 0.143 0.857 44 H 0.084 0.916 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.839 -30.689 -3.753 30.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.242 4.242 3 Si 0.911 3.089 4 H -0.210 1.210 5 H -0.223 1.223 6 H -0.223 1.223 7 C -0.466 4.466 8 H 0.083 0.917 9 N -0.390 5.390 10 C 0.043 3.957 11 C -0.127 4.127 12 H 0.104 0.896 13 C -0.166 4.166 14 C -0.034 4.034 15 N -0.344 5.344 16 C 0.356 3.644 17 O -0.409 6.409 18 C -0.118 4.118 19 C -0.138 4.138 20 C -0.120 4.120 21 C 0.000 4.000 22 C -0.057 4.057 23 C -0.157 4.157 24 N -0.215 5.215 25 C -0.049 4.049 26 O -0.083 6.083 27 C -0.125 4.125 28 C -0.076 4.076 29 C -0.007 4.007 30 H 0.066 0.934 31 H 0.201 0.799 32 H 0.041 0.959 33 H 0.044 0.956 34 H 0.100 0.900 35 H 0.104 0.896 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.187 0.813 39 H 0.153 0.847 40 H 0.205 0.795 41 H 0.268 0.732 42 H 0.152 0.848 43 H 0.160 0.840 44 H 0.102 0.898 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -2.075 -29.207 -3.949 29.545 hybrid contribution -0.325 -1.335 -0.309 1.408 sum -2.400 -30.542 -4.258 30.930 Atomic orbital electron populations 1.70885 1.06043 1.28463 1.53316 1.25797 0.97053 1.01049 1.00321 0.83235 0.74206 0.75592 0.75826 1.21019 1.22271 1.22254 1.20007 0.92011 0.85788 1.48785 0.91733 1.42374 1.04900 1.00914 1.90807 1.20519 0.92585 0.84267 0.98369 1.22621 0.98544 0.94958 0.96551 0.89645 1.22733 0.98316 0.94166 1.01421 1.22563 0.92860 0.95038 0.92909 1.48419 1.32939 1.10199 1.42857 1.17871 0.79636 0.87628 0.79271 1.90828 1.45680 1.59517 1.44840 1.20129 0.99314 0.93117 0.99200 1.22526 0.99290 0.93060 0.98950 1.20781 0.97538 0.95583 0.98107 1.17859 0.97990 0.86226 0.97941 1.21490 0.95250 0.93498 0.95509 1.23397 1.03083 0.86643 1.02625 1.70368 1.10820 1.27831 1.12436 1.28220 0.98189 0.82174 0.96362 1.84489 1.50805 1.21321 1.51717 1.20979 0.99602 0.92945 0.99008 1.21007 0.95233 0.94962 0.96360 1.22400 1.00118 0.80464 0.97693 0.93368 0.79949 0.95893 0.95650 0.89995 0.89607 0.90322 0.90331 0.81280 0.84681 0.79459 0.73152 0.84770 0.83967 0.89797 0.90771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -29.42 13.70 55.49 0.76 -28.66 16 2 C -0.04 -1.30 5.50 -17.43 -0.10 -1.39 16 3 Si 1.08 26.00 29.92 -169.99 -5.09 20.91 16 4 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 5 H -0.30 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.30 -6.78 7.11 56.52 0.40 -6.38 16 7 C -0.34 -9.45 9.99 -15.06 -0.15 -9.60 16 8 H 0.06 1.78 7.83 -52.49 -0.41 1.37 16 9 N -0.74 -18.47 5.55 -59.91 -0.33 -18.81 16 10 C 0.17 3.23 5.72 -4.04 -0.02 3.21 16 11 C -0.11 -1.57 3.05 -88.47 -0.27 -1.84 16 12 H 0.09 1.32 8.14 -51.93 -0.42 0.89 16 13 C -0.13 -1.27 6.42 -24.90 -0.16 -1.43 16 14 C 0.09 0.80 4.86 -3.07 -0.01 0.79 16 15 N -0.61 -8.14 3.33 -177.14 -0.59 -8.73 16 16 C 0.57 8.34 7.80 -12.44 -0.10 8.25 16 17 O -0.53 -9.95 16.59 5.28 0.09 -9.87 16 18 C -0.11 -1.30 5.88 -104.90 -0.62 -1.91 16 19 C -0.12 -1.00 8.55 -39.59 -0.34 -1.34 16 20 C -0.10 -0.73 9.51 -39.59 -0.38 -1.11 16 21 C 0.00 0.01 5.88 -104.91 -0.62 -0.61 16 22 C 0.00 -0.04 7.06 -36.59 -0.26 -0.30 16 23 C -0.02 -0.14 11.29 -17.42 -0.20 -0.33 16 24 N -0.49 -4.12 11.27 -14.66 -0.17 -4.29 16 25 C 0.18 1.05 13.21 52.17 0.69 1.74 16 26 O -0.20 -1.56 10.57 4.25 0.04 -1.51 16 27 C -0.11 -0.96 9.67 -39.59 -0.38 -1.34 16 28 C -0.06 -0.60 9.53 -39.59 -0.38 -0.98 16 29 C 0.11 1.81 6.35 -2.53 -0.02 1.79 16 30 H 0.26 7.87 6.77 -40.82 -0.28 7.59 16 31 H 0.37 9.41 6.50 -40.82 -0.27 9.15 16 32 H 0.02 0.44 7.96 -51.93 -0.41 0.03 16 33 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.08 0.77 8.04 -51.93 -0.42 0.36 16 35 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.08 0.55 6.73 -51.92 -0.35 0.20 16 37 H 0.08 0.57 6.73 -51.93 -0.35 0.22 16 38 H 0.17 1.09 2.71 -59.49 -0.16 0.93 16 39 H 0.14 0.57 7.02 -52.49 -0.37 0.20 16 40 H 0.19 0.94 7.29 -52.48 -0.38 0.56 16 41 H 0.25 0.23 8.06 -52.48 -0.42 -0.19 16 42 H 0.13 1.01 7.93 -52.49 -0.42 0.59 16 43 H 0.14 1.53 7.65 -52.49 -0.40 1.13 16 44 H 0.08 1.56 7.99 -51.93 -0.41 1.14 16 45 H 0.07 1.22 7.91 -51.93 -0.41 0.81 16 LS Contribution 374.06 15.07 5.64 5.64 Total: -1.00 -37.24 374.06 -8.47 -45.71 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: -5.53 Total: 6.01 kcal Atomic # 6 Polarization: -3.11 SS G_CDS: -3.30 Total: -6.41 kcal Atomic # 7 Polarization: -60.16 SS G_CDS: -0.33 Total: -60.48 kcal Atomic # 8 Polarization: -11.51 SS G_CDS: 0.13 Total: -11.38 kcal Atomic # 14 Polarization: 26.00 SS G_CDS: -5.09 Total: 20.91 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -37.24 -8.47 -45.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480655004.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.526 kcal (2) G-P(sol) polarization free energy of solvation -37.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.710 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds