Wall clock time and date at job start Sat Apr 11 2020 06:17:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86798 * 119.99904 * 2 1 4 4 H 1.48501 * 109.47284 * 0.02562 * 3 2 1 5 5 H 1.48499 * 109.47120 * 119.99795 * 3 2 1 6 6 H 1.48492 * 109.47150 * 239.99825 * 3 2 1 7 7 C 1.38812 * 119.99852 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99671 * 180.02562 * 7 2 1 9 9 N 1.36931 * 120.00182 * 0.02562 * 7 2 1 10 10 C 1.46504 * 120.00195 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.47047 * 179.97438 * 10 9 7 12 12 H 1.08994 * 110.89259 * 308.88289 * 11 10 9 13 13 C 1.55160 * 111.00308 * 184.99994 * 11 10 9 14 14 C 1.54322 * 102.94321 * 206.42733 * 13 11 10 15 15 N 1.47022 * 107.27402 * 22.19454 * 14 13 11 16 16 C 1.34771 * 125.65245 * 181.01297 * 15 14 13 17 17 O 1.21592 * 120.00424 * 174.32336 * 16 15 14 18 18 C 1.47596 * 119.99803 * 354.32877 * 16 15 14 19 19 C 1.39819 * 120.00087 * 7.05356 * 18 16 15 20 20 C 1.36577 * 119.99670 * 179.81190 * 19 18 16 21 21 C 1.39807 * 120.00125 * 0.44951 * 20 19 18 22 22 C 1.47584 * 119.99724 * 179.76714 * 21 20 19 23 23 C 1.35939 * 126.59984 * 0.02562 * 22 21 20 24 24 N 1.34032 * 107.50132 * 180.02562 * 23 22 21 25 25 C 1.30426 * 108.92444 * 0.02562 * 24 23 22 26 26 O 1.33942 * 109.06450 * 359.72926 * 25 24 23 27 27 C 1.39804 * 120.00417 * 359.78301 * 21 20 19 28 28 C 1.36587 * 119.99981 * 0.02562 * 27 21 20 29 29 C 1.47424 * 108.69961 * 1.05838 * 15 14 13 30 30 H 0.96994 * 119.99433 * 179.97438 * 1 2 3 31 31 H 0.96999 * 120.00146 * 0.02562 * 9 7 2 32 32 H 1.08992 * 109.46981 * 300.00246 * 10 9 7 33 33 H 1.09003 * 109.46583 * 60.00228 * 10 9 7 34 34 H 1.09003 * 110.71852 * 324.78811 * 13 11 10 35 35 H 1.09002 * 110.71792 * 87.88510 * 13 11 10 36 36 H 1.09008 * 109.88173 * 141.61372 * 14 13 11 37 37 H 1.08996 * 109.88445 * 262.77127 * 14 13 11 38 38 H 1.08002 * 119.99985 * 0.02852 * 19 18 16 39 39 H 1.08002 * 120.00000 * 180.21010 * 20 19 18 40 40 H 1.08007 * 126.25399 * 359.97438 * 23 22 21 41 41 H 1.08003 * 125.46810 * 180.02562 * 25 24 23 42 42 H 1.07995 * 120.00187 * 179.97438 * 27 21 20 43 43 H 1.07999 * 119.99985 * 179.97438 * 28 27 21 44 44 H 1.09000 * 110.36591 * 217.03609 * 29 15 14 45 45 H 1.09005 * 110.36492 * 94.71211 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2852 2.7465 0.0006 5 1 3.1039 1.6964 1.2125 6 1 3.1040 1.6964 -1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0005 11 6 1.0639 -4.8196 0.0012 12 1 0.3258 -4.6995 0.7941 13 6 1.7993 -6.1801 0.1274 14 6 0.8246 -7.1643 -0.5527 15 7 -0.0335 -6.3782 -1.4512 16 6 -1.0302 -6.8690 -2.2142 17 8 -1.7439 -6.1116 -2.8430 18 6 -1.2554 -8.3259 -2.2864 19 6 -0.5346 -9.1868 -1.4532 20 6 -0.7459 -10.5346 -1.5173 21 6 -1.6759 -11.0541 -2.4227 22 6 -1.9004 -12.5110 -2.4955 23 6 -1.2815 -13.4647 -1.7502 24 7 -1.7720 -14.6532 -2.1287 25 6 -2.6576 -14.4658 -3.0676 26 8 -2.7641 -13.1534 -3.3130 27 6 -2.3931 -10.1937 -3.2592 28 6 -2.1848 -8.8455 -3.1924 29 6 0.3776 -4.9642 -1.3801 30 1 -0.4849 -0.8400 -0.0004 31 1 0.3557 -2.3881 -0.0002 32 1 2.6848 -3.7145 -0.8894 33 1 2.6847 -3.7145 0.8906 34 1 2.7522 -6.1538 -0.4012 35 1 1.9480 -6.4423 1.1750 36 1 1.3841 -7.9030 -1.1268 37 1 0.2145 -7.6622 0.2009 38 1 0.1865 -8.7857 -0.7564 39 1 -0.1916 -11.1994 -0.8713 40 1 -0.5310 -13.2957 -0.9922 41 1 -3.2189 -15.2437 -3.5640 42 1 -3.1112 -10.5951 -3.9589 43 1 -2.7385 -8.1808 -3.8390 44 1 -0.4938 -4.3123 -1.4408 45 1 1.0817 -4.7333 -2.1796 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001480655004.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:54 Heat of formation + Delta-G solvation = 30.414852 kcal Electronic energy + Delta-G solvation = -27947.494443 eV Core-core repulsion = 23931.900986 eV Total energy + Delta-G solvation = -4015.593457 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -44.30736 -41.77999 -39.87105 -38.83666 -36.83277 -35.84403 -34.49437 -33.55232 -32.44790 -31.89334 -30.28185 -29.67194 -27.16587 -25.87059 -24.71889 -24.53221 -23.74306 -22.75221 -22.27338 -21.52008 -21.08207 -19.39909 -19.01302 -18.53442 -17.71108 -17.62564 -17.24458 -16.98670 -16.41573 -16.16067 -15.91251 -15.73358 -15.29306 -15.22275 -15.01315 -14.83756 -14.63007 -14.48067 -14.26046 -14.05164 -13.78614 -13.68184 -13.36491 -12.94468 -12.77560 -12.56997 -12.47463 -12.40344 -11.99507 -11.88453 -11.70086 -11.68924 -11.62441 -11.19720 -11.16672 -11.02223 -10.93065 -10.23431 -9.84376 -9.18721 -9.12384 -8.41042 -5.35093 -0.80021 0.29040 0.62852 1.56785 1.57951 1.66428 1.68570 1.76319 1.84675 1.85638 2.71450 2.73979 3.20800 3.33871 3.39402 3.46245 3.49316 3.61118 3.77939 3.79269 3.84437 3.98737 4.02516 4.16332 4.18949 4.25723 4.32841 4.42545 4.51682 4.58063 4.69122 4.71823 4.74054 4.75828 4.90726 4.92165 4.97937 5.06643 5.14127 5.17745 5.26131 5.28061 5.32324 5.34236 5.57971 5.65923 6.34708 6.46908 6.63823 6.92265 7.07844 7.98131 8.09380 9.10661 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.034792 B = 0.001779 C = 0.001708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.587772 B =15735.885654 C =16393.504278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.977 5.977 2 C -0.108 4.108 3 Si 1.130 2.870 4 H -0.295 1.295 5 H -0.273 1.273 6 H -0.278 1.278 7 C -0.335 4.335 8 H 0.071 0.929 9 N -0.760 5.760 10 C 0.168 3.832 11 C -0.099 4.099 12 H 0.076 0.924 13 C -0.114 4.114 14 C 0.081 3.919 15 N -0.609 5.609 16 C 0.559 3.441 17 O -0.591 6.591 18 C -0.138 4.138 19 C -0.107 4.107 20 C -0.094 4.094 21 C 0.006 3.994 22 C -0.030 4.030 23 C -0.011 4.011 24 N -0.523 5.523 25 C 0.192 3.808 26 O -0.210 6.210 27 C -0.113 4.113 28 C -0.070 4.070 29 C 0.117 3.883 30 H 0.241 0.759 31 H 0.358 0.642 32 H 0.024 0.976 33 H 0.036 0.964 34 H 0.093 0.907 35 H 0.116 0.884 36 H 0.113 0.887 37 H 0.108 0.892 38 H 0.194 0.806 39 H 0.175 0.825 40 H 0.213 0.787 41 H 0.294 0.706 42 H 0.141 0.859 43 H 0.125 0.875 44 H 0.040 0.960 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.460 -34.319 -2.365 34.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.625 5.625 2 C -0.299 4.299 3 Si 0.954 3.046 4 H -0.222 1.222 5 H -0.199 1.199 6 H -0.204 1.204 7 C -0.466 4.466 8 H 0.089 0.911 9 N -0.405 5.405 10 C 0.042 3.958 11 C -0.118 4.118 12 H 0.095 0.905 13 C -0.152 4.152 14 C -0.039 4.039 15 N -0.341 5.341 16 C 0.350 3.650 17 O -0.473 6.473 18 C -0.141 4.141 19 C -0.124 4.124 20 C -0.111 4.111 21 C 0.005 3.995 22 C -0.083 4.083 23 C -0.150 4.150 24 N -0.251 5.251 25 C -0.032 4.032 26 O -0.097 6.097 27 C -0.131 4.131 28 C -0.089 4.089 29 C -0.005 4.005 30 H 0.052 0.948 31 H 0.189 0.811 32 H 0.042 0.958 33 H 0.054 0.946 34 H 0.112 0.888 35 H 0.134 0.866 36 H 0.131 0.869 37 H 0.126 0.874 38 H 0.210 0.790 39 H 0.192 0.808 40 H 0.230 0.770 41 H 0.309 0.691 42 H 0.159 0.841 43 H 0.143 0.857 44 H 0.059 0.941 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.291 -32.915 -2.530 33.014 hybrid contribution -1.046 -0.425 -0.780 1.372 sum -0.755 -33.341 -3.310 33.513 Atomic orbital electron populations 1.71004 1.07343 1.27735 1.56406 1.27294 0.97073 1.04963 1.00587 0.82613 0.73338 0.71373 0.77276 1.22171 1.19918 1.20385 1.20428 0.92546 0.87097 1.46537 0.91074 1.42664 1.04767 1.02313 1.90759 1.20717 0.93293 0.83366 0.98442 1.22433 0.97889 0.96335 0.95163 0.90516 1.22771 0.98218 0.90465 1.03721 1.22990 0.92757 0.95000 0.93169 1.48471 1.33077 1.09443 1.43113 1.18535 0.79018 0.88989 0.78412 1.90784 1.47958 1.61207 1.47392 1.19938 1.01504 0.91130 1.01520 1.22719 0.98600 0.93088 0.97995 1.21176 0.96805 0.95457 0.97669 1.18069 0.97497 0.86488 0.97399 1.21503 0.96563 0.93444 0.96785 1.23849 1.02709 0.86169 1.02290 1.70422 1.12325 1.28379 1.13946 1.29267 0.96833 0.82164 0.94949 1.84499 1.51034 1.22185 1.51992 1.21024 1.00205 0.92207 0.99710 1.20942 0.95652 0.95599 0.96681 1.22136 0.98187 0.81858 0.98364 0.94836 0.81067 0.95821 0.94588 0.88844 0.86563 0.86907 0.87430 0.78971 0.80774 0.77044 0.69080 0.84081 0.85716 0.94116 0.91937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -63.16 13.70 21.65 0.30 -62.86 16 2 C -0.11 -6.43 5.50 84.86 0.47 -5.96 16 3 Si 1.13 52.65 29.92 68.60 2.05 54.70 16 4 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16 5 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 6 H -0.28 -12.02 7.11 99.48 0.71 -11.32 16 7 C -0.33 -19.07 9.99 84.03 0.84 -18.23 16 8 H 0.07 3.88 7.83 -2.91 -0.02 3.86 16 9 N -0.76 -38.75 5.55 -343.46 -1.90 -40.66 16 10 C 0.17 6.32 5.72 86.38 0.49 6.81 16 11 C -0.10 -2.84 3.05 -9.40 -0.03 -2.87 16 12 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 13 C -0.11 -1.85 6.42 31.78 0.20 -1.65 16 14 C 0.08 1.17 4.86 86.73 0.42 1.60 16 15 N -0.61 -16.19 3.33 -832.62 -2.77 -18.96 16 16 C 0.56 17.23 7.80 86.71 0.68 17.90 16 17 O -0.59 -24.35 16.59 -4.01 -0.07 -24.42 16 18 C -0.14 -3.10 5.88 -20.04 -0.12 -3.22 16 19 C -0.11 -1.44 8.55 22.26 0.19 -1.25 16 20 C -0.09 -0.98 9.51 22.26 0.21 -0.76 16 21 C 0.01 0.09 5.88 -20.05 -0.12 -0.02 16 22 C -0.03 -0.43 7.06 24.20 0.17 -0.26 16 23 C -0.01 -0.13 11.29 83.82 0.95 0.81 16 24 N -0.52 -7.39 11.27 -315.02 -3.55 -10.94 16 25 C 0.19 1.77 13.21 130.45 1.72 3.50 16 26 O -0.21 -2.89 10.57 -7.70 -0.08 -2.98 16 27 C -0.11 -1.99 9.67 22.26 0.22 -1.78 16 28 C -0.07 -1.55 9.53 22.26 0.21 -1.33 16 29 C 0.12 3.90 6.35 86.86 0.55 4.45 16 30 H 0.24 15.69 6.77 -92.71 -0.63 15.07 16 31 H 0.36 19.35 6.50 -92.71 -0.60 18.75 16 32 H 0.02 0.90 7.96 -2.39 -0.02 0.88 16 33 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.09 1.37 8.04 -2.39 -0.02 1.35 16 35 H 0.12 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.11 0.98 6.73 -2.38 -0.02 0.96 16 37 H 0.11 1.03 6.73 -2.39 -0.02 1.01 16 38 H 0.19 1.53 2.71 -9.49 -0.03 1.50 16 39 H 0.17 0.45 7.02 -2.91 -0.02 0.43 16 40 H 0.21 1.20 7.29 -2.91 -0.02 1.18 16 41 H 0.29 -0.53 8.06 -2.91 -0.02 -0.55 16 42 H 0.14 2.15 7.93 -2.91 -0.02 2.12 16 43 H 0.12 3.08 7.65 -2.91 -0.02 3.06 16 44 H 0.04 1.67 7.99 -2.39 -0.02 1.66 16 45 H 0.06 2.18 7.91 -2.38 -0.02 2.16 16 Total: -1.00 -87.38 374.06 1.60 -85.77 By element: Atomic # 1 Polarization: 22.03 SS G_CDS: 0.56 Total: 22.59 kcal Atomic # 6 Polarization: -9.32 SS G_CDS: 7.06 Total: -2.26 kcal Atomic # 7 Polarization: -125.49 SS G_CDS: -7.93 Total: -133.41 kcal Atomic # 8 Polarization: -27.25 SS G_CDS: -0.15 Total: -27.40 kcal Atomic # 14 Polarization: 52.65 SS G_CDS: 2.05 Total: 54.70 kcal Total: -87.38 1.60 -85.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480655004.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.189 kcal (2) G-P(sol) polarization free energy of solvation -87.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.774 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds