Wall clock time and date at job start Sat Apr 11 2020 06:17:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86801 * 120.00106 * 2 1 4 4 H 1.48500 * 109.46801 * 269.99902 * 3 2 1 5 5 H 1.48493 * 109.47124 * 29.99814 * 3 2 1 6 6 H 1.48502 * 109.47220 * 149.99988 * 3 2 1 7 7 C 1.38822 * 119.99768 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99890 * 0.02562 * 7 2 1 9 9 N 1.36933 * 119.99687 * 179.97438 * 7 2 1 10 10 C 1.46501 * 119.99768 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.46905 * 185.01485 * 10 9 7 12 12 H 1.08993 * 110.00092 * 306.47671 * 11 10 9 13 13 C 1.54316 * 109.77384 * 67.63355 * 11 10 9 14 14 C 1.55160 * 102.86468 * 141.88341 * 13 11 10 15 15 C 1.54913 * 101.58028 * 324.30108 * 14 13 11 16 16 N 1.47024 * 109.88200 * 185.37897 * 11 10 9 17 17 C 1.34783 * 125.64764 * 61.67856 * 16 11 10 18 18 O 1.21583 * 119.99871 * 354.96897 * 17 16 11 19 19 C 1.47524 * 119.99992 * 174.96590 * 17 16 11 20 20 C 1.36622 * 126.83301 * 180.32825 * 19 17 16 21 21 C 1.42186 * 103.79920 * 180.10259 * 20 19 17 22 22 C 1.48442 * 126.84524 * 179.85390 * 21 20 19 23 23 C 1.39317 * 120.11766 * 179.71229 * 22 21 20 24 24 C 1.38028 * 119.88023 * 179.74625 * 23 22 21 25 25 C 1.38317 * 120.11703 * 0.28183 * 24 23 22 26 26 C 1.38326 * 120.24082 * 359.97438 * 25 24 23 27 27 C 1.38025 * 120.11743 * 359.97438 * 26 25 24 28 28 N 1.30935 * 106.30763 * 359.59918 * 21 20 19 29 29 O 1.20862 * 111.81368 * 0.25896 * 28 21 20 30 30 H 0.97000 * 120.00112 * 359.97438 * 1 2 3 31 31 H 0.96998 * 120.00304 * 0.02562 * 9 7 2 32 32 H 1.09001 * 109.47076 * 65.01837 * 10 9 7 33 33 H 1.08994 * 109.47404 * 305.01847 * 10 9 7 34 34 H 1.08997 * 110.92756 * 23.46946 * 13 11 10 35 35 H 1.08996 * 110.59051 * 260.13940 * 13 11 10 36 36 H 1.08999 * 111.00247 * 206.23166 * 14 13 11 37 37 H 1.08997 * 111.00557 * 82.37556 * 14 13 11 38 38 H 1.08999 * 110.36915 * 278.17134 * 15 14 13 39 39 H 1.09004 * 110.36487 * 155.84941 * 15 14 13 40 40 H 1.08008 * 128.09974 * 0.02562 * 20 19 17 41 41 H 1.08001 * 120.06468 * 0.03082 * 23 22 21 42 42 H 1.07996 * 119.94145 * 180.25152 * 24 23 22 43 43 H 1.07996 * 119.88273 * 179.97438 * 25 24 23 44 44 H 1.07997 * 119.93688 * 179.97438 * 26 25 24 45 45 H 1.07995 * 120.05508 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0102 -1.2023 0.0005 8 1 1.4702 -2.1375 0.0005 9 7 3.3796 -1.2022 0.0000 10 6 4.1120 -2.4710 0.0000 11 6 5.6115 -2.1941 0.1255 12 1 5.9270 -1.4926 -0.6468 13 6 5.9205 -1.6151 1.5221 14 6 7.2754 -2.2810 1.8802 15 6 7.1082 -3.6855 1.2484 16 7 6.3644 -3.4505 -0.0026 17 6 6.3770 -4.2518 -1.0863 18 8 5.6566 -4.0040 -2.0338 19 6 7.2650 -5.4293 -1.1227 20 6 7.3943 -6.3262 -2.1452 21 6 8.3651 -7.2483 -1.6666 22 6 8.8873 -8.4411 -2.3794 23 6 9.8481 -9.2503 -1.7772 24 6 10.3264 -10.3612 -2.4422 25 6 9.8577 -10.6682 -3.7069 26 6 8.9076 -9.8651 -4.3117 27 6 8.4218 -8.7525 -3.6551 28 7 8.7108 -6.8324 -0.4742 29 8 8.1141 -5.8302 -0.1576 30 1 -0.4850 0.8400 0.0004 31 1 3.8646 -0.3622 -0.0004 32 1 3.9175 -3.0029 -0.9313 33 1 3.7834 -3.0803 0.8418 34 1 5.1503 -1.8978 2.2398 35 1 6.0245 -0.5312 1.4733 36 1 7.4028 -2.3512 2.9604 37 1 8.1072 -1.7441 1.4243 38 1 6.5378 -4.3349 1.9126 39 1 8.0831 -4.1234 1.0336 40 1 6.8787 -6.3338 -3.0942 41 1 10.2147 -9.0116 -0.7897 42 1 11.0682 -10.9915 -1.9746 43 1 10.2348 -11.5381 -4.2240 44 1 8.5454 -10.1092 -5.2994 45 1 7.6797 -8.1264 -4.1281 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482059370.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:58 Heat of formation + Delta-G solvation = 79.582676 kcal Electronic energy + Delta-G solvation = -28455.170002 eV Core-core repulsion = 24441.708622 eV Total energy + Delta-G solvation = -4013.461381 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -45.26719 -40.22262 -39.52513 -37.69389 -34.93131 -34.68769 -32.71045 -31.64102 -31.50005 -31.29471 -30.67295 -29.18576 -25.58064 -24.79426 -24.53026 -23.33491 -22.30629 -21.95584 -21.90400 -20.70557 -19.75467 -18.25693 -18.07512 -17.38175 -16.99077 -16.73167 -16.46676 -15.69352 -15.37447 -14.92709 -14.54300 -14.45502 -14.20138 -14.01008 -13.81822 -13.79543 -13.53803 -13.45272 -13.19581 -12.92638 -12.73281 -12.42916 -12.10265 -11.81262 -11.74188 -11.43326 -11.31243 -11.23277 -11.17184 -10.93393 -10.71476 -10.57515 -10.30313 -10.13924 -10.04731 -9.57242 -9.40950 -8.96807 -8.85815 -8.72061 -7.20487 -5.73597 -3.09375 0.35347 0.67125 0.94685 2.02366 2.29239 2.84600 2.91453 3.37344 3.41580 3.43088 3.46695 3.50448 3.94607 4.40052 4.46438 4.50903 4.57683 4.61230 4.63195 4.72091 4.78397 4.87238 4.92788 5.01478 5.15892 5.21893 5.33353 5.37877 5.48216 5.54269 5.54804 5.57752 5.60952 5.70554 5.79595 5.87581 5.94728 5.98752 6.03966 6.04729 6.19882 6.30838 6.46749 6.65790 6.86107 7.27131 7.65468 7.89799 8.02844 8.44530 9.23136 9.95016 10.14635 11.44838 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.021698 B = 0.002180 C = 0.002031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.114647 B =12839.300603 C =13783.276080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.003 3.997 3 Si 0.885 3.115 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.240 4.240 8 H 0.090 0.910 9 N -0.751 5.751 10 C 0.148 3.852 11 C 0.128 3.872 12 H 0.081 0.919 13 C -0.124 4.124 14 C -0.133 4.133 15 C 0.093 3.907 16 N -0.598 5.598 17 C 0.613 3.387 18 O -0.496 6.496 19 C -0.066 4.066 20 C -0.145 4.145 21 C 0.053 3.947 22 C -0.022 4.022 23 C -0.091 4.091 24 C -0.121 4.121 25 C -0.109 4.109 26 C -0.118 4.118 27 C -0.093 4.093 28 N -0.341 5.341 29 O 0.123 5.877 30 H 0.259 0.741 31 H 0.360 0.640 32 H 0.043 0.957 33 H 0.032 0.968 34 H 0.088 0.912 35 H 0.083 0.917 36 H 0.086 0.914 37 H 0.075 0.925 38 H 0.077 0.923 39 H 0.084 0.916 40 H 0.186 0.814 41 H 0.129 0.871 42 H 0.128 0.872 43 H 0.126 0.874 44 H 0.130 0.870 45 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.044 -18.344 -2.078 31.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.192 4.192 3 Si 0.716 3.284 4 H -0.211 1.211 5 H -0.218 1.218 6 H -0.203 1.203 7 C -0.370 4.370 8 H 0.108 0.892 9 N -0.397 5.397 10 C 0.020 3.980 11 C 0.025 3.975 12 H 0.099 0.901 13 C -0.162 4.162 14 C -0.171 4.171 15 C -0.030 4.030 16 N -0.331 5.331 17 C 0.397 3.603 18 O -0.370 6.370 19 C -0.131 4.131 20 C -0.167 4.167 21 C -0.102 4.102 22 C -0.023 4.023 23 C -0.110 4.110 24 C -0.139 4.139 25 C -0.128 4.128 26 C -0.136 4.136 27 C -0.112 4.112 28 N -0.041 5.041 29 O 0.049 5.951 30 H 0.069 0.931 31 H 0.193 0.807 32 H 0.061 0.939 33 H 0.050 0.950 34 H 0.107 0.893 35 H 0.102 0.898 36 H 0.105 0.895 37 H 0.094 0.906 38 H 0.095 0.905 39 H 0.102 0.898 40 H 0.204 0.796 41 H 0.147 0.853 42 H 0.145 0.855 43 H 0.144 0.856 44 H 0.148 0.852 45 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 25.256 -18.767 -1.725 31.512 hybrid contribution 0.072 1.278 -0.623 1.423 sum 25.327 -17.489 -2.347 30.868 Atomic orbital electron populations 1.69702 1.05076 1.25757 1.57709 1.24668 0.95250 0.97163 1.02159 0.86536 0.79124 0.84987 0.77800 1.21077 1.21757 1.20337 1.19028 0.80380 0.94767 1.42779 0.89244 1.42530 1.04042 1.01762 1.91386 1.20980 0.87209 0.89864 0.99976 1.21976 0.93487 0.83796 0.98215 0.90093 1.22737 0.96950 1.00884 0.95619 1.22800 0.98286 0.94652 1.01328 1.22569 0.96689 0.98489 0.85211 1.48351 1.46885 1.23785 1.14119 1.16120 0.81474 0.79993 0.82696 1.90947 1.39947 1.70637 1.35461 1.24206 0.98226 1.00156 0.90545 1.22872 0.99275 0.93114 1.01428 1.21937 0.98282 0.98121 0.91909 1.17670 0.98177 0.92417 0.94060 1.21233 0.95526 0.94198 1.00079 1.21126 1.00362 0.97131 0.95244 1.21323 0.96732 0.99455 0.95253 1.21121 0.97425 0.94795 1.00303 1.21195 0.99382 0.97358 0.93272 1.73960 1.15739 0.99059 1.15308 1.85028 1.40366 1.31308 1.38432 0.93084 0.80738 0.93874 0.95025 0.89340 0.89806 0.89503 0.90596 0.90452 0.89796 0.79648 0.85313 0.85453 0.85620 0.85235 0.85162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.70 13.97 55.49 0.78 -28.93 16 2 C 0.00 0.09 5.50 -17.43 -0.10 0.00 16 3 Si 0.89 22.13 27.74 -169.99 -4.71 17.41 16 4 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 5 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 6 H -0.28 -6.35 6.52 56.52 0.37 -5.98 16 7 C -0.24 -6.92 10.47 -15.06 -0.16 -7.08 16 8 H 0.09 2.79 8.06 -52.49 -0.42 2.37 16 9 N -0.75 -18.09 5.22 -59.91 -0.31 -18.40 16 10 C 0.15 3.00 5.66 -4.04 -0.02 2.98 16 11 C 0.13 2.00 2.95 -66.96 -0.20 1.80 16 12 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 13 C -0.12 -1.58 6.23 -24.90 -0.16 -1.74 16 14 C -0.13 -1.23 7.08 -24.58 -0.17 -1.40 16 15 C 0.09 0.95 6.36 -2.53 -0.02 0.94 16 16 N -0.60 -8.24 3.07 -164.24 -0.50 -8.75 16 17 C 0.61 9.18 7.67 -12.47 -0.10 9.08 16 18 O -0.50 -9.15 15.70 5.29 0.08 -9.06 16 19 C -0.07 -0.83 7.06 -36.38 -0.26 -1.08 16 20 C -0.14 -1.64 10.30 -38.65 -0.40 -2.04 16 21 C 0.05 0.59 7.05 -82.53 -0.58 0.01 16 22 C -0.02 -0.22 5.88 -104.89 -0.62 -0.83 16 23 C -0.09 -0.80 9.70 -39.26 -0.38 -1.18 16 24 C -0.12 -0.83 10.03 -39.63 -0.40 -1.23 16 25 C -0.11 -0.68 10.04 -39.52 -0.40 -1.08 16 26 C -0.12 -0.79 10.03 -39.63 -0.40 -1.18 16 27 C -0.09 -0.75 9.60 -39.26 -0.38 -1.12 16 28 N -0.34 -4.08 11.78 33.39 0.39 -3.69 16 29 O 0.12 1.44 8.45 15.52 0.13 1.57 16 30 H 0.26 7.82 8.31 -40.82 -0.34 7.48 16 31 H 0.36 8.29 5.48 -40.82 -0.22 8.07 16 32 H 0.04 0.98 6.54 -51.93 -0.34 0.64 16 33 H 0.03 0.65 8.01 -51.93 -0.42 0.24 16 34 H 0.09 1.22 7.77 -51.93 -0.40 0.82 16 35 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 38 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.08 0.76 6.00 -51.93 -0.31 0.45 16 40 H 0.19 1.77 7.57 -52.48 -0.40 1.37 16 41 H 0.13 1.09 7.89 -52.49 -0.41 0.68 16 42 H 0.13 0.59 8.06 -52.49 -0.42 0.17 16 43 H 0.13 0.49 8.06 -52.49 -0.42 0.07 16 44 H 0.13 0.58 8.06 -52.49 -0.42 0.15 16 45 H 0.13 0.87 7.22 -52.49 -0.38 0.49 16 LS Contribution 376.02 15.07 5.67 5.67 Total: -1.00 -34.64 376.02 -9.06 -43.70 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: -5.86 Total: 5.63 kcal Atomic # 6 Polarization: -0.43 SS G_CDS: -4.72 Total: -5.15 kcal Atomic # 7 Polarization: -60.12 SS G_CDS: 0.35 Total: -59.76 kcal Atomic # 8 Polarization: -7.71 SS G_CDS: 0.21 Total: -7.49 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -4.71 Total: 17.41 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -34.64 -9.06 -43.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482059370.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.281 kcal (2) G-P(sol) polarization free energy of solvation -34.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.698 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds