Wall clock time and date at job start Sat Apr 11 2020 06:17:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86801 * 120.00106 * 2 1 4 4 H 1.48500 * 109.46801 * 269.99902 * 3 2 1 5 5 H 1.48493 * 109.47124 * 29.99814 * 3 2 1 6 6 H 1.48502 * 109.47220 * 149.99988 * 3 2 1 7 7 C 1.38822 * 119.99768 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99890 * 0.02562 * 7 2 1 9 9 N 1.36933 * 119.99687 * 179.97438 * 7 2 1 10 10 C 1.46501 * 119.99768 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.46905 * 185.01485 * 10 9 7 12 12 H 1.08993 * 110.00092 * 306.47671 * 11 10 9 13 13 C 1.54316 * 109.77384 * 67.63355 * 11 10 9 14 14 C 1.55160 * 102.86468 * 141.88341 * 13 11 10 15 15 C 1.54913 * 101.58028 * 324.30108 * 14 13 11 16 16 N 1.47024 * 109.88200 * 185.37897 * 11 10 9 17 17 C 1.34783 * 125.64764 * 61.67856 * 16 11 10 18 18 O 1.21583 * 119.99871 * 354.96897 * 17 16 11 19 19 C 1.47524 * 119.99992 * 174.96590 * 17 16 11 20 20 C 1.36622 * 126.83301 * 180.32825 * 19 17 16 21 21 C 1.42186 * 103.79920 * 180.10259 * 20 19 17 22 22 C 1.48442 * 126.84524 * 179.85390 * 21 20 19 23 23 C 1.39317 * 120.11766 * 179.71229 * 22 21 20 24 24 C 1.38028 * 119.88023 * 179.74625 * 23 22 21 25 25 C 1.38317 * 120.11703 * 0.28183 * 24 23 22 26 26 C 1.38326 * 120.24082 * 359.97438 * 25 24 23 27 27 C 1.38025 * 120.11743 * 359.97438 * 26 25 24 28 28 N 1.30935 * 106.30763 * 359.59918 * 21 20 19 29 29 O 1.20862 * 111.81368 * 0.25896 * 28 21 20 30 30 H 0.97000 * 120.00112 * 359.97438 * 1 2 3 31 31 H 0.96998 * 120.00304 * 0.02562 * 9 7 2 32 32 H 1.09001 * 109.47076 * 65.01837 * 10 9 7 33 33 H 1.08994 * 109.47404 * 305.01847 * 10 9 7 34 34 H 1.08997 * 110.92756 * 23.46946 * 13 11 10 35 35 H 1.08996 * 110.59051 * 260.13940 * 13 11 10 36 36 H 1.08999 * 111.00247 * 206.23166 * 14 13 11 37 37 H 1.08997 * 111.00557 * 82.37556 * 14 13 11 38 38 H 1.08999 * 110.36915 * 278.17134 * 15 14 13 39 39 H 1.09004 * 110.36487 * 155.84941 * 15 14 13 40 40 H 1.08008 * 128.09974 * 0.02562 * 20 19 17 41 41 H 1.08001 * 120.06468 * 0.03082 * 23 22 21 42 42 H 1.07996 * 119.94145 * 180.25152 * 24 23 22 43 43 H 1.07996 * 119.88273 * 179.97438 * 25 24 23 44 44 H 1.07997 * 119.93688 * 179.97438 * 26 25 24 45 45 H 1.07995 * 120.05508 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0102 -1.2023 0.0005 8 1 1.4702 -2.1375 0.0005 9 7 3.3796 -1.2022 0.0000 10 6 4.1120 -2.4710 0.0000 11 6 5.6115 -2.1941 0.1255 12 1 5.9270 -1.4926 -0.6468 13 6 5.9205 -1.6151 1.5221 14 6 7.2754 -2.2810 1.8802 15 6 7.1082 -3.6855 1.2484 16 7 6.3644 -3.4505 -0.0026 17 6 6.3770 -4.2518 -1.0863 18 8 5.6566 -4.0040 -2.0338 19 6 7.2650 -5.4293 -1.1227 20 6 7.3943 -6.3262 -2.1452 21 6 8.3651 -7.2483 -1.6666 22 6 8.8873 -8.4411 -2.3794 23 6 9.8481 -9.2503 -1.7772 24 6 10.3264 -10.3612 -2.4422 25 6 9.8577 -10.6682 -3.7069 26 6 8.9076 -9.8651 -4.3117 27 6 8.4218 -8.7525 -3.6551 28 7 8.7108 -6.8324 -0.4742 29 8 8.1141 -5.8302 -0.1576 30 1 -0.4850 0.8400 0.0004 31 1 3.8646 -0.3622 -0.0004 32 1 3.9175 -3.0029 -0.9313 33 1 3.7834 -3.0803 0.8418 34 1 5.1503 -1.8978 2.2398 35 1 6.0245 -0.5312 1.4733 36 1 7.4028 -2.3512 2.9604 37 1 8.1072 -1.7441 1.4243 38 1 6.5378 -4.3349 1.9126 39 1 8.0831 -4.1234 1.0336 40 1 6.8787 -6.3338 -3.0942 41 1 10.2147 -9.0116 -0.7897 42 1 11.0682 -10.9915 -1.9746 43 1 10.2348 -11.5381 -4.2240 44 1 8.5454 -10.1092 -5.2994 45 1 7.6797 -8.1264 -4.1281 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482059370.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:57 Heat of formation + Delta-G solvation = 57.892178 kcal Electronic energy + Delta-G solvation = -28456.110573 eV Core-core repulsion = 24441.708622 eV Total energy + Delta-G solvation = -4014.401951 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -46.17514 -41.38562 -40.08856 -38.89387 -36.62364 -35.67088 -33.97799 -33.38582 -32.48754 -31.89831 -31.38484 -30.68781 -26.91896 -26.11054 -25.28721 -24.33407 -23.67573 -22.96880 -22.78966 -21.78217 -20.81803 -19.83921 -19.01266 -18.82123 -17.90271 -17.62179 -17.37249 -16.70339 -16.46552 -16.23462 -15.74542 -15.61076 -15.43234 -15.21400 -14.94472 -14.81752 -14.48882 -14.34458 -14.16507 -14.07072 -14.06536 -13.77776 -13.22463 -13.08007 -12.96777 -12.82347 -12.34115 -12.12459 -12.10727 -11.99268 -11.97920 -11.92762 -11.81745 -11.64784 -11.52111 -11.04114 -10.96700 -9.95613 -9.89398 -9.60907 -9.34149 -8.03769 -5.39414 -0.48824 -0.15066 0.40304 1.23506 1.24840 1.37325 1.43735 1.50502 1.74146 1.88728 2.48530 2.71277 2.85243 3.04502 3.26816 3.48912 3.52900 3.71094 3.77634 3.78785 3.94124 4.00913 4.03060 4.03473 4.22511 4.26532 4.28321 4.45981 4.46997 4.57239 4.65070 4.70750 4.80960 4.84246 4.92281 5.01854 5.06172 5.07702 5.12460 5.28449 5.36271 5.43999 5.46334 5.52475 5.71397 5.95389 6.14887 6.20047 6.61767 6.87567 7.04594 7.76631 8.00350 9.17691 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.021698 B = 0.002180 C = 0.002031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.114647 B =12839.300603 C =13783.276080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.984 5.984 2 C -0.064 4.064 3 Si 0.960 3.040 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.239 1.239 7 C -0.239 4.239 8 H 0.048 0.952 9 N -0.747 5.747 10 C 0.151 3.849 11 C 0.133 3.867 12 H 0.077 0.923 13 C -0.123 4.123 14 C -0.116 4.116 15 C 0.087 3.913 16 N -0.596 5.596 17 C 0.611 3.389 18 O -0.541 6.541 19 C -0.076 4.076 20 C -0.140 4.140 21 C 0.056 3.944 22 C -0.050 4.050 23 C -0.104 4.104 24 C -0.124 4.124 25 C -0.105 4.105 26 C -0.122 4.122 27 C -0.102 4.102 28 N -0.351 5.351 29 O 0.128 5.872 30 H 0.259 0.741 31 H 0.369 0.631 32 H 0.014 0.986 33 H 0.026 0.974 34 H 0.077 0.923 35 H 0.093 0.907 36 H 0.115 0.885 37 H 0.091 0.909 38 H 0.084 0.916 39 H 0.100 0.900 40 H 0.199 0.801 41 H 0.124 0.876 42 H 0.150 0.850 43 H 0.154 0.846 44 H 0.153 0.847 45 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.542 -18.660 -1.749 34.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.634 5.634 2 C -0.256 4.256 3 Si 0.786 3.214 4 H -0.208 1.208 5 H -0.219 1.219 6 H -0.163 1.163 7 C -0.370 4.370 8 H 0.066 0.934 9 N -0.394 5.394 10 C 0.023 3.977 11 C 0.030 3.970 12 H 0.095 0.905 13 C -0.161 4.161 14 C -0.154 4.154 15 C -0.034 4.034 16 N -0.329 5.329 17 C 0.397 3.603 18 O -0.419 6.419 19 C -0.141 4.141 20 C -0.162 4.162 21 C -0.099 4.099 22 C -0.051 4.051 23 C -0.124 4.124 24 C -0.141 4.141 25 C -0.123 4.123 26 C -0.139 4.139 27 C -0.121 4.121 28 N -0.051 5.051 29 O 0.054 5.946 30 H 0.068 0.932 31 H 0.203 0.797 32 H 0.032 0.968 33 H 0.044 0.956 34 H 0.096 0.904 35 H 0.111 0.889 36 H 0.133 0.867 37 H 0.109 0.891 38 H 0.103 0.897 39 H 0.118 0.882 40 H 0.216 0.784 41 H 0.142 0.858 42 H 0.167 0.833 43 H 0.172 0.828 44 H 0.171 0.829 45 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 28.822 -19.113 -1.354 34.610 hybrid contribution -1.038 1.151 -0.789 1.740 sum 27.784 -17.962 -2.143 33.154 Atomic orbital electron populations 1.69902 1.07305 1.26901 1.59264 1.25598 0.96248 1.01610 1.02125 0.85345 0.79122 0.78825 0.78147 1.20760 1.21856 1.16308 1.18940 0.82513 0.93381 1.42127 0.93429 1.42396 1.02419 1.03498 1.91071 1.20978 0.90578 0.88043 0.98083 1.21806 0.90064 0.84780 1.00357 0.90506 1.22720 0.98800 1.01505 0.93034 1.22813 0.96431 0.93017 1.03100 1.22862 0.97069 0.99799 0.83685 1.48449 1.46468 1.22941 1.14995 1.16372 0.81160 0.80384 0.82351 1.90917 1.41894 1.71986 1.37133 1.23795 0.98891 0.99970 0.91461 1.23124 0.98890 0.92586 1.01611 1.22216 0.97727 0.98396 0.91552 1.17834 0.99624 0.92625 0.95034 1.21340 0.95779 0.95008 1.00248 1.21430 1.00518 0.96618 0.95570 1.21724 0.95810 0.99879 0.94914 1.21467 0.97168 0.94089 1.01203 1.21411 0.99671 0.98156 0.92867 1.73928 1.16077 0.99246 1.15848 1.85012 1.40211 1.31350 1.38064 0.93194 0.79679 0.96847 0.95581 0.90424 0.88878 0.86683 0.89074 0.89742 0.88203 0.78427 0.85764 0.83253 0.82815 0.82918 0.84404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -64.43 13.97 21.65 0.30 -64.13 16 2 C -0.06 -3.89 5.50 84.86 0.47 -3.42 16 3 Si 0.96 45.42 27.74 68.60 1.90 47.32 16 4 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 5 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 6 H -0.24 -9.74 6.52 99.48 0.65 -9.09 16 7 C -0.24 -14.25 10.47 84.04 0.88 -13.37 16 8 H 0.05 3.17 8.06 -2.91 -0.02 3.14 16 9 N -0.75 -36.30 5.22 -343.45 -1.79 -38.09 16 10 C 0.15 6.31 5.66 86.38 0.49 6.80 16 11 C 0.13 4.10 2.95 45.34 0.13 4.23 16 12 H 0.08 2.44 8.14 -2.39 -0.02 2.43 16 13 C -0.12 -2.85 6.23 31.78 0.20 -2.65 16 14 C -0.12 -1.74 7.08 31.99 0.23 -1.51 16 15 C 0.09 1.60 6.36 86.86 0.55 2.15 16 16 N -0.60 -16.16 3.07 -791.79 -2.43 -18.59 16 17 C 0.61 18.67 7.67 86.69 0.66 19.33 16 18 O -0.54 -20.90 15.70 -3.98 -0.06 -20.97 16 19 C -0.08 -1.91 7.06 24.34 0.17 -1.73 16 20 C -0.14 -3.18 10.30 22.87 0.24 -2.95 16 21 C 0.06 1.25 7.05 42.98 0.30 1.55 16 22 C -0.05 -0.95 5.88 -20.04 -0.12 -1.07 16 23 C -0.10 -1.74 9.70 22.48 0.22 -1.52 16 24 C -0.12 -1.44 10.03 22.24 0.22 -1.22 16 25 C -0.10 -1.01 10.04 22.31 0.22 -0.79 16 26 C -0.12 -1.34 10.03 22.24 0.22 -1.11 16 27 C -0.10 -1.53 9.60 22.48 0.22 -1.31 16 28 N -0.35 -8.23 11.78 -48.92 -0.58 -8.81 16 29 O 0.13 2.90 8.45 65.71 0.56 3.46 16 30 H 0.26 16.06 8.31 -92.71 -0.77 15.28 16 31 H 0.37 16.49 5.48 -92.71 -0.51 15.98 16 32 H 0.01 0.65 6.54 -2.39 -0.02 0.64 16 33 H 0.03 1.12 8.01 -2.39 -0.02 1.10 16 34 H 0.08 2.00 7.77 -2.39 -0.02 1.98 16 35 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 36 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 39 H 0.10 1.57 6.00 -2.39 -0.01 1.55 16 40 H 0.20 3.81 7.57 -2.91 -0.02 3.79 16 41 H 0.12 2.07 7.89 -2.91 -0.02 2.04 16 42 H 0.15 1.00 8.06 -2.91 -0.02 0.98 16 43 H 0.15 0.60 8.06 -2.91 -0.02 0.58 16 44 H 0.15 0.91 8.06 -2.91 -0.02 0.89 16 45 H 0.14 1.73 7.22 -2.91 -0.02 1.71 16 Total: -1.00 -78.95 376.02 3.67 -75.28 By element: Atomic # 1 Polarization: 22.65 SS G_CDS: 0.46 Total: 23.10 kcal Atomic # 6 Polarization: -3.89 SS G_CDS: 5.31 Total: 1.42 kcal Atomic # 7 Polarization: -125.12 SS G_CDS: -4.49 Total: -129.62 kcal Atomic # 8 Polarization: -18.00 SS G_CDS: 0.49 Total: -17.51 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 1.90 Total: 47.32 kcal Total: -78.95 3.67 -75.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482059370.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.171 kcal (2) G-P(sol) polarization free energy of solvation -78.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.278 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds