Wall clock time and date at job start Sat Apr 11 2020 06:18:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86795 * 119.99755 * 2 1 4 4 H 1.48498 * 109.47551 * 0.02562 * 3 2 1 5 5 H 1.48501 * 109.47364 * 120.00304 * 3 2 1 6 6 H 1.48504 * 109.47007 * 239.99982 * 3 2 1 7 7 C 1.38803 * 119.99957 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00503 * 179.97438 * 7 2 1 9 9 N 1.36943 * 120.00106 * 359.97438 * 7 2 1 10 10 C 1.46501 * 119.99782 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.46734 * 174.94448 * 10 9 7 12 12 H 1.09000 * 109.87908 * 54.92045 * 11 10 9 13 13 C 1.54329 * 109.88461 * 293.74334 * 11 10 9 14 14 C 1.55154 * 102.94256 * 218.39064 * 13 11 10 15 15 C 1.54913 * 101.58214 * 35.50415 * 14 13 11 16 16 N 1.47019 * 109.88275 * 175.93627 * 11 10 9 17 17 C 1.34780 * 125.64836 * 298.32498 * 16 11 10 18 18 O 1.21580 * 119.99875 * 4.81929 * 17 16 11 19 19 C 1.47530 * 119.99991 * 184.82686 * 17 16 11 20 20 C 1.36623 * 126.82807 * 179.70946 * 19 17 16 21 21 C 1.42191 * 103.79240 * 179.97438 * 20 19 17 22 22 C 1.48450 * 126.84096 * 180.09367 * 21 20 19 23 23 C 1.39314 * 120.12007 * 359.97438 * 22 21 20 24 24 C 1.38024 * 119.87549 * 179.69791 * 23 22 21 25 25 C 1.38319 * 120.12270 * 0.57200 * 24 23 22 26 26 C 1.38319 * 120.23715 * 359.72116 * 25 24 23 27 27 C 1.38021 * 120.11872 * 359.97438 * 26 25 24 28 28 N 1.30933 * 106.31534 * 0.33834 * 21 20 19 29 29 O 1.20872 * 111.80256 * 359.77726 * 28 21 20 30 30 H 0.97000 * 120.00308 * 180.02562 * 1 2 3 31 31 H 0.97001 * 119.99952 * 0.02562 * 9 7 2 32 32 H 1.08995 * 109.47215 * 294.94115 * 10 9 7 33 33 H 1.09000 * 109.47138 * 54.94621 * 10 9 7 34 34 H 1.09006 * 110.71786 * 336.75313 * 13 11 10 35 35 H 1.08991 * 110.71867 * 100.02463 * 13 11 10 36 36 H 1.08993 * 111.00805 * 277.42868 * 14 13 11 37 37 H 1.09003 * 111.00255 * 153.57535 * 14 13 11 38 38 H 1.08997 * 110.36456 * 204.15374 * 15 14 13 39 39 H 1.08996 * 110.46132 * 81.87592 * 15 14 13 40 40 H 1.07995 * 128.10304 * 0.02562 * 20 19 17 41 41 H 1.07998 * 120.05857 * 359.96986 * 23 22 21 42 42 H 1.08005 * 119.93789 * 180.29172 * 24 23 22 43 43 H 1.07998 * 119.88140 * 179.70292 * 25 24 23 44 44 H 1.08000 * 119.94328 * 180.02562 * 26 25 24 45 45 H 1.08005 * 120.05683 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 1.2852 2.7465 0.0006 5 1 3.1039 1.6965 1.2124 6 1 3.1039 1.6964 -1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0005 10 6 2.0581 -3.6567 -0.0017 11 6 1.0688 -4.8169 0.1257 12 1 0.3174 -4.7513 -0.6612 13 6 0.3883 -4.7769 1.5103 14 6 0.2907 -6.2773 1.8930 15 6 1.6025 -6.8382 1.2895 16 7 1.7845 -6.0974 0.0280 17 6 2.4898 -6.5237 -1.0385 18 8 2.6458 -5.7913 -1.9963 19 6 3.0723 -7.8791 -1.0437 20 6 3.8025 -8.4528 -2.0458 21 6 4.1127 -9.7457 -1.5418 22 6 4.8987 -10.8029 -2.2261 23 6 5.4179 -10.5748 -3.4986 24 6 6.1532 -11.5589 -4.1277 25 6 6.3650 -12.7742 -3.5020 26 6 5.8467 -13.0081 -2.2412 27 6 5.1152 -12.0287 -1.6004 28 7 3.5625 -9.8199 -0.3560 29 8 2.9844 -8.7992 -0.0646 30 1 -0.4850 -0.8400 0.0004 31 1 0.3555 -2.3880 -0.0005 32 1 2.6143 -3.7543 -0.9339 33 1 2.7516 -3.6766 0.8390 34 1 1.0051 -4.2353 2.2276 35 1 -0.6040 -4.3315 1.4395 36 1 -0.5811 -6.7420 1.4326 37 1 0.2731 -6.4040 2.9755 38 1 1.5031 -7.9055 1.0917 39 1 2.4404 -6.6542 1.9619 40 1 4.0798 -8.0244 -2.9976 41 1 5.2490 -9.6280 -3.9901 42 1 6.5602 -11.3814 -5.1123 43 1 6.9369 -13.5432 -3.9998 44 1 6.0153 -13.9586 -1.7568 45 1 4.7105 -12.2125 -0.6160 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001483936946.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:00 Heat of formation + Delta-G solvation = 75.365701 kcal Electronic energy + Delta-G solvation = -28428.544582 eV Core-core repulsion = 24414.900340 eV Total energy + Delta-G solvation = -4013.644242 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -45.26449 -40.19456 -39.52976 -37.66656 -34.95256 -34.75037 -32.73548 -31.62116 -31.41998 -31.28808 -30.65808 -28.58429 -25.42832 -24.53078 -24.49937 -23.34071 -22.45711 -22.29712 -21.88176 -20.71471 -19.68388 -18.12903 -18.04886 -17.24467 -17.00220 -16.64521 -16.42428 -15.76340 -15.47049 -14.97094 -14.52196 -14.38042 -14.22139 -13.87075 -13.80160 -13.70957 -13.63365 -13.45988 -13.27690 -13.14511 -12.73448 -12.27911 -12.10322 -11.81591 -11.71054 -11.42603 -11.24928 -11.18930 -10.83197 -10.66393 -10.60196 -10.57548 -10.22867 -10.04644 -9.95430 -9.41435 -9.20220 -8.97203 -8.83358 -8.67963 -6.96757 -6.07023 -3.06385 0.35167 0.67238 0.94234 2.02171 2.30199 2.85658 2.92963 3.42682 3.50295 3.54748 3.58760 3.75825 3.95083 4.41178 4.49871 4.50464 4.57684 4.62780 4.71659 4.72373 4.81949 4.87787 4.95161 5.01741 5.15621 5.27470 5.36625 5.39540 5.51662 5.54251 5.57375 5.62218 5.71517 5.80137 5.85275 5.93133 5.98174 6.01671 6.03644 6.04386 6.26436 6.36763 6.46302 6.68721 6.88354 7.29944 7.65904 7.84105 7.92496 8.78925 9.25471 10.11635 10.26301 11.41584 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.019129 B = 0.002142 C = 0.001971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.426183 B =13069.195810 C =14203.498911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C -0.046 4.046 3 Si 1.081 2.919 4 H -0.285 1.285 5 H -0.296 1.296 6 H -0.295 1.295 7 C -0.326 4.326 8 H 0.064 0.936 9 N -0.739 5.739 10 C 0.149 3.851 11 C 0.130 3.870 12 H 0.080 0.920 13 C -0.121 4.121 14 C -0.132 4.132 15 C 0.093 3.907 16 N -0.597 5.597 17 C 0.612 3.388 18 O -0.497 6.497 19 C -0.065 4.065 20 C -0.145 4.145 21 C 0.053 3.947 22 C -0.022 4.022 23 C -0.093 4.093 24 C -0.118 4.118 25 C -0.109 4.109 26 C -0.121 4.121 27 C -0.091 4.091 28 N -0.341 5.341 29 O 0.123 5.877 30 H 0.254 0.746 31 H 0.366 0.634 32 H 0.036 0.964 33 H 0.024 0.976 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.076 0.924 37 H 0.086 0.914 38 H 0.084 0.916 39 H 0.076 0.924 40 H 0.186 0.814 41 H 0.130 0.870 42 H 0.130 0.870 43 H 0.126 0.874 44 H 0.128 0.872 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.194 -28.191 -1.753 29.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.243 4.243 3 Si 0.911 3.089 4 H -0.210 1.210 5 H -0.223 1.223 6 H -0.223 1.223 7 C -0.457 4.457 8 H 0.082 0.918 9 N -0.385 5.385 10 C 0.021 3.979 11 C 0.028 3.972 12 H 0.098 0.902 13 C -0.159 4.159 14 C -0.170 4.170 15 C -0.030 4.030 16 N -0.331 5.331 17 C 0.396 3.604 18 O -0.372 6.372 19 C -0.131 4.131 20 C -0.168 4.168 21 C -0.103 4.103 22 C -0.023 4.023 23 C -0.112 4.112 24 C -0.136 4.136 25 C -0.128 4.128 26 C -0.139 4.139 27 C -0.110 4.110 28 N -0.041 5.041 29 O 0.049 5.951 30 H 0.065 0.935 31 H 0.200 0.800 32 H 0.054 0.946 33 H 0.042 0.958 34 H 0.104 0.896 35 H 0.104 0.896 36 H 0.094 0.906 37 H 0.105 0.895 38 H 0.102 0.898 39 H 0.094 0.906 40 H 0.203 0.797 41 H 0.148 0.852 42 H 0.148 0.852 43 H 0.144 0.856 44 H 0.146 0.854 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 8.340 -27.079 -1.390 28.368 hybrid contribution 0.143 -1.339 -0.638 1.491 sum 8.483 -28.419 -2.029 29.727 Atomic orbital electron populations 1.70889 1.05965 1.28279 1.53903 1.25768 0.97085 1.00920 1.00563 0.83231 0.74193 0.75561 0.75865 1.21034 1.22310 1.22275 1.20005 0.92013 0.85622 1.48105 0.91839 1.42191 1.04737 1.00618 1.90967 1.20931 0.93207 0.84512 0.99230 1.21961 0.94439 0.82411 0.98421 0.90163 1.22692 1.01955 0.95651 0.95561 1.22797 0.96586 0.96294 1.01369 1.22564 0.98779 0.96596 0.85025 1.48378 1.50179 1.20136 1.14381 1.16128 0.78796 0.82617 0.82821 1.90940 1.58619 1.53273 1.34342 1.24219 1.04684 0.93723 0.90434 1.22865 0.99484 0.92843 1.01569 1.21942 1.01403 0.94996 0.91916 1.17672 0.98614 0.91795 0.94225 1.21193 0.96719 0.99874 0.93436 1.21118 0.98787 0.93413 1.00327 1.21321 0.99034 0.97243 0.95164 1.21127 0.98071 0.99263 0.95394 1.21234 0.97605 0.92146 1.00046 1.73966 1.09490 1.04741 1.15874 1.85029 1.54710 1.16978 1.38426 0.93508 0.80044 0.94605 0.95827 0.89617 0.89644 0.90558 0.89537 0.89821 0.90575 0.79675 0.85180 0.85238 0.85612 0.85443 0.85306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -29.40 13.70 55.49 0.76 -28.64 16 2 C -0.05 -1.36 5.50 -17.43 -0.10 -1.46 16 3 Si 1.08 26.44 29.92 -169.99 -5.09 21.36 16 4 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 5 H -0.30 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.30 -6.97 7.11 56.52 0.40 -6.57 16 7 C -0.33 -9.48 9.99 -15.06 -0.15 -9.63 16 8 H 0.06 1.84 7.83 -52.48 -0.41 1.43 16 9 N -0.74 -19.04 5.40 -59.91 -0.32 -19.36 16 10 C 0.15 3.23 5.64 -4.04 -0.02 3.20 16 11 C 0.13 2.18 2.96 -66.95 -0.20 1.98 16 12 H 0.08 1.43 8.14 -51.93 -0.42 1.00 16 13 C -0.12 -1.67 6.18 -24.90 -0.15 -1.83 16 14 C -0.13 -1.34 7.08 -24.58 -0.17 -1.51 16 15 C 0.09 1.02 6.36 -2.53 -0.02 1.01 16 16 N -0.60 -8.73 3.06 -164.23 -0.50 -9.23 16 17 C 0.61 9.59 7.67 -12.47 -0.10 9.49 16 18 O -0.50 -9.54 15.72 5.29 0.08 -9.46 16 19 C -0.07 -0.85 7.06 -36.38 -0.26 -1.11 16 20 C -0.15 -1.70 10.30 -38.65 -0.40 -2.09 16 21 C 0.05 0.61 7.05 -82.53 -0.58 0.03 16 22 C -0.02 -0.22 5.88 -104.89 -0.62 -0.84 16 23 C -0.09 -0.76 9.60 -39.26 -0.38 -1.14 16 24 C -0.12 -0.80 10.03 -39.63 -0.40 -1.19 16 25 C -0.11 -0.69 10.04 -39.52 -0.40 -1.09 16 26 C -0.12 -0.84 10.03 -39.63 -0.40 -1.24 16 27 C -0.09 -0.81 9.70 -39.26 -0.38 -1.19 16 28 N -0.34 -4.19 11.78 33.39 0.39 -3.79 16 29 O 0.12 1.49 8.45 15.54 0.13 1.62 16 30 H 0.25 7.73 6.77 -40.82 -0.28 7.45 16 31 H 0.37 9.43 6.41 -40.82 -0.26 9.16 16 32 H 0.04 0.87 6.58 -51.93 -0.34 0.52 16 33 H 0.02 0.52 8.05 -51.93 -0.42 0.10 16 34 H 0.09 1.30 7.78 -51.93 -0.40 0.90 16 35 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 36 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.08 0.81 6.00 -51.93 -0.31 0.50 16 39 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.19 1.82 7.57 -52.49 -0.40 1.43 16 41 H 0.13 0.89 7.22 -52.49 -0.38 0.51 16 42 H 0.13 0.58 8.06 -52.48 -0.42 0.16 16 43 H 0.13 0.50 8.06 -52.49 -0.42 0.07 16 44 H 0.13 0.61 8.06 -52.49 -0.42 0.18 16 45 H 0.13 1.11 7.89 -52.48 -0.41 0.70 16 LS Contribution 377.42 15.07 5.69 5.69 Total: -1.00 -34.92 377.42 -9.36 -44.28 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: -5.79 Total: 6.15 kcal Atomic # 6 Polarization: -3.89 SS G_CDS: -4.71 Total: -8.60 kcal Atomic # 7 Polarization: -61.35 SS G_CDS: 0.33 Total: -61.02 kcal Atomic # 8 Polarization: -8.06 SS G_CDS: 0.21 Total: -7.84 kcal Atomic # 14 Polarization: 26.44 SS G_CDS: -5.09 Total: 21.36 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -34.92 -9.36 -44.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483936946.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.647 kcal (2) G-P(sol) polarization free energy of solvation -34.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.281 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds